Wall clock time and date at job start Wed Apr 1 2020 03:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.45197 * 2 1 4 4 C 1.53043 * 109.45940 * 119.96196 * 2 1 3 5 5 C 1.53202 * 109.31166 * 181.38577 * 4 2 1 6 6 N 1.46927 * 108.77199 * 305.36748 * 5 4 2 7 7 C 1.36942 * 120.62399 * 233.62694 * 6 5 4 8 8 H 1.07997 * 120.00497 * 27.67491 * 7 6 5 9 9 C 1.38811 * 119.99393 * 207.66623 * 7 6 5 10 10 N 1.31614 * 120.00440 * 17.36940 * 9 7 6 11 11 Si 1.86803 * 119.99622 * 197.36458 * 9 7 6 12 12 H 1.48493 * 109.47373 * 60.00309 * 11 9 7 13 13 H 1.48500 * 109.47051 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47207 * 300.00169 * 11 9 7 15 15 C 1.46918 * 118.74189 * 53.61222 * 6 5 4 16 16 C 1.53034 * 109.46332 * 240.03011 * 2 1 3 17 17 H 1.09009 * 109.52157 * 58.64461 * 16 2 1 18 18 N 1.46498 * 109.49653 * 298.57032 * 16 2 1 19 19 C 1.34788 * 119.99794 * 155.16139 * 18 16 2 20 20 O 1.21542 * 120.00189 * 359.97438 * 19 18 16 21 21 C 1.47862 * 119.99546 * 179.97438 * 19 18 16 22 22 C 1.39616 * 120.03115 * 0.24883 * 21 19 18 23 23 C 1.37997 * 119.74392 * 180.36601 * 22 21 19 24 24 C 1.38093 * 120.27646 * 359.78629 * 23 22 21 25 25 C 1.39080 * 120.71891 * 359.76958 * 24 23 22 26 26 C 1.39171 * 119.23494 * 0.26943 * 25 24 23 27 27 N 1.40098 * 110.94506 * 180.51973 * 25 24 23 28 28 C 1.46895 * 111.00583 * 103.48599 * 27 25 24 29 29 C 1.47900 * 107.88307 * 341.66639 * 27 25 24 30 30 C 1.51627 * 131.37137 * 179.59416 * 24 23 22 31 31 H 1.09004 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47017 * 299.96365 * 1 2 3 33 33 H 1.08998 * 109.47267 * 59.96712 * 1 2 3 34 34 H 1.08998 * 109.49754 * 61.43628 * 4 2 1 35 35 H 1.08995 * 109.52884 * 301.35400 * 4 2 1 36 36 H 1.09004 * 109.58335 * 185.58122 * 5 4 2 37 37 H 1.08996 * 109.58188 * 65.15223 * 5 4 2 38 38 H 0.96998 * 120.00419 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.58683 * 186.59862 * 15 6 5 40 40 H 1.08993 * 109.59005 * 66.17550 * 15 6 5 41 41 H 0.96999 * 120.00315 * 335.15045 * 18 16 2 42 42 H 1.08001 * 120.12574 * 0.11599 * 22 21 19 43 43 H 1.07999 * 119.85825 * 179.80002 * 23 22 21 44 44 H 1.07995 * 119.96064 * 179.86051 * 26 25 24 45 45 H 1.09006 * 109.46922 * 59.99818 * 28 27 25 46 46 H 1.08992 * 109.47782 * 179.97438 * 28 27 25 47 47 H 1.08998 * 109.47447 * 300.00370 * 28 27 25 48 48 H 1.09001 * 110.77437 * 145.59242 * 29 27 25 49 49 H 1.08999 * 110.77575 * 269.01594 * 29 27 25 50 50 H 1.08999 * 110.73892 * 77.89524 * 30 24 23 51 51 H 1.09004 * 110.89652 * 314.64135 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2643 6 7 4.0678 -1.2488 0.0000 7 6 4.9758 -2.2739 0.0002 8 1 5.0085 -2.9662 0.8284 9 6 5.8539 -2.4233 -1.0645 10 7 6.0602 -1.4217 -1.8929 11 14 6.7428 -4.0461 -1.3212 12 1 5.7473 -5.1294 -1.5226 13 1 7.6169 -3.9478 -2.5177 14 1 7.5714 -4.3510 -0.1272 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2500 17 1 1.6572 -0.2213 -2.1401 18 7 1.5801 -2.1117 -1.2341 19 6 1.4547 -2.7932 -2.3902 20 8 1.7226 -2.2537 -3.4458 21 6 0.9912 -4.1972 -2.3741 22 6 0.6783 -4.8159 -1.1622 23 6 0.2534 -6.1288 -1.1534 24 6 0.1330 -6.8295 -2.3372 25 6 0.4317 -6.2256 -3.5539 26 6 0.8614 -4.9019 -3.5683 27 7 0.2283 -7.1144 -4.6175 28 6 -1.0201 -6.8078 -5.3285 29 6 0.2001 -8.4858 -4.0644 30 6 -0.2944 -8.2570 -2.6177 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8904 33 1 -0.3634 0.5143 -0.8897 34 1 1.6978 -1.7555 1.2384 35 1 1.6572 -0.2212 2.1402 36 1 3.9417 -1.2844 2.0985 37 1 3.9142 0.3410 1.3673 38 1 6.6741 -1.5259 -2.6366 39 1 3.9417 -1.2845 -2.0983 40 1 3.9143 0.3409 -1.3673 41 1 1.3660 -2.5422 -0.3916 42 1 0.7722 -4.2702 -0.2349 43 1 0.0140 -6.6101 -0.2167 44 1 1.0987 -4.4221 -4.5062 45 1 -0.9728 -5.7935 -5.7248 46 1 -1.1532 -7.5124 -6.1493 47 1 -1.8604 -6.8896 -4.6391 48 1 -0.4999 -9.1116 -4.6178 49 1 1.1980 -8.9243 -4.0671 50 1 -1.3787 -8.3536 -2.5607 51 1 0.1901 -8.9502 -1.9300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968601813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:20 Heat of formation + Delta-G solvation = 28.599327 kcal Electronic energy + Delta-G solvation = -31393.909989 eV Core-core repulsion = 27486.759421 eV Total energy + Delta-G solvation = -3907.150569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.90876 -39.56906 -37.71080 -36.33053 -34.11751 -32.82396 -32.45317 -31.00842 -30.08535 -29.67553 -28.58874 -27.24399 -26.03971 -24.20684 -23.60435 -22.36908 -21.96738 -21.09993 -21.05862 -20.01823 -18.64941 -17.59498 -16.69803 -16.21972 -15.96370 -15.66363 -15.12977 -14.91541 -14.56014 -14.29218 -13.99052 -13.89457 -13.72722 -13.64883 -13.41404 -13.26718 -13.22892 -12.95226 -12.64457 -12.57391 -12.33869 -12.10887 -11.91061 -11.77281 -11.56465 -11.40209 -11.28861 -11.07840 -11.00225 -10.87270 -10.66711 -10.49084 -10.20867 -9.89176 -9.68188 -9.56225 -9.48360 -9.33568 -8.80010 -8.40856 -8.31211 -8.01241 -6.61078 -5.72319 -3.15046 0.95140 1.36394 3.13893 3.42027 3.43198 3.50056 3.51057 3.79719 4.09720 4.35781 4.55095 4.57755 4.74796 4.88561 5.00670 5.14503 5.18769 5.19752 5.24566 5.27353 5.32820 5.36260 5.39392 5.46552 5.51630 5.58838 5.60709 5.68634 5.74567 5.89016 5.93705 5.94636 6.01841 6.15833 6.24916 6.31240 6.34472 6.38073 6.41022 6.45160 6.52969 6.61040 6.68121 6.75737 6.76920 6.90573 7.02631 7.14200 7.41448 7.71791 7.85040 8.13810 8.51141 8.81952 9.26066 9.90436 10.45660 11.35576 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.004070 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.741207 B = 6878.112075 C = 8269.867037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.255 4.255 8 H 0.063 0.937 9 C 0.009 3.991 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.284 1.284 15 C 0.160 3.840 16 C 0.126 3.874 17 H 0.077 0.923 18 N -0.691 5.691 19 C 0.557 3.443 20 O -0.542 6.542 21 C -0.103 4.103 22 C -0.093 4.093 23 C -0.096 4.096 24 C -0.125 4.125 25 C 0.076 3.924 26 C -0.053 4.053 27 N -0.495 5.495 28 C 0.027 3.973 29 C 0.049 3.951 30 C -0.110 4.110 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.018 0.982 38 H 0.255 0.745 39 H 0.098 0.902 40 H 0.025 0.975 41 H 0.394 0.606 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.032 0.968 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.502 -9.218 1.082 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.096 0.904 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.385 4.385 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.541 5.541 11 Si 0.725 3.275 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.210 1.210 15 C 0.033 3.967 16 C 0.020 3.980 17 H 0.095 0.905 18 N -0.341 5.341 19 C 0.343 3.657 20 O -0.420 6.420 21 C -0.106 4.106 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.019 4.019 26 C -0.073 4.073 27 N -0.212 5.212 28 C -0.119 4.119 29 C -0.078 4.078 30 C -0.149 4.149 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.043 0.957 41 H 0.230 0.770 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.155 0.845 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.051 0.949 48 H 0.103 0.897 49 H 0.109 0.891 50 H 0.099 0.901 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.776 -8.768 -0.241 18.930 hybrid contribution -0.033 -1.156 0.830 1.423 sum -16.809 -9.923 0.588 19.528 Atomic orbital electron populations 1.21852 0.96014 1.01337 1.00969 1.21316 0.94575 0.99929 0.95493 0.90370 1.22086 0.99321 0.99309 0.96114 1.20931 0.90649 0.96539 0.90309 1.43967 1.48292 1.39557 0.99120 1.19018 1.10128 1.03138 1.06209 0.91957 1.24972 0.97146 0.97093 0.99786 1.69980 1.37388 1.28994 1.17707 0.86484 0.79369 0.84347 0.77288 1.20993 1.21600 1.20991 1.21209 0.86642 0.97784 0.91041 1.21819 0.98989 0.80278 0.96919 0.90537 1.45726 1.66378 1.14007 1.08009 1.18010 0.78018 0.85318 0.84369 1.90744 1.50807 1.69657 1.30811 1.19843 1.02362 0.94919 0.93524 1.21222 0.98108 0.94702 0.97206 1.20275 1.00506 0.93874 0.96841 1.21120 1.00783 0.96518 0.94319 1.19373 0.99868 0.92975 0.89729 1.20525 0.96662 0.91482 0.98646 1.60162 1.34650 1.01881 1.24556 1.22492 0.88661 1.02934 0.97859 1.23186 1.02575 0.89350 0.92664 1.21699 1.01430 0.93427 0.98298 0.93093 0.93152 0.93069 0.92873 0.92762 0.92840 0.96433 0.93539 0.88416 0.95682 0.77008 0.85266 0.85678 0.84502 0.90743 0.90749 0.94942 0.89694 0.89137 0.90116 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.05 37.15 0.34 -1.51 16 2 C -0.09 -1.46 2.48 -90.58 -0.22 -1.69 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 4 C -0.13 -2.01 5.20 -26.60 -0.14 -2.15 16 5 C 0.14 2.82 6.52 -3.71 -0.02 2.79 16 6 N -0.59 -14.23 2.91 -172.32 -0.50 -14.73 16 7 C -0.26 -6.95 9.59 -15.06 -0.14 -7.10 16 8 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 9 C 0.01 0.27 4.91 -17.43 -0.09 0.18 16 10 N -0.90 -26.85 11.19 55.49 0.62 -26.23 16 11 Si 0.90 22.62 29.59 -169.99 -5.03 17.59 16 12 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.16 3.86 4.91 -3.71 -0.02 3.84 16 16 C 0.13 2.41 2.24 -67.81 -0.15 2.26 16 17 H 0.08 1.52 7.58 -51.92 -0.39 1.13 16 18 N -0.69 -12.56 4.20 -54.63 -0.23 -12.79 16 19 C 0.56 11.06 7.74 -12.32 -0.10 10.96 16 20 O -0.54 -12.62 15.99 5.33 0.09 -12.54 16 21 C -0.10 -1.76 5.86 -105.06 -0.62 -2.37 16 22 C -0.09 -1.32 9.55 -39.16 -0.37 -1.70 16 23 C -0.10 -1.20 10.01 -39.72 -0.40 -1.60 16 24 C -0.12 -1.57 6.23 -103.91 -0.65 -2.22 16 25 C 0.08 1.09 5.58 -83.42 -0.47 0.63 16 26 C -0.05 -0.87 9.62 -38.85 -0.37 -1.25 16 27 N -0.50 -6.07 5.33 -176.88 -0.94 -7.02 16 28 C 0.03 0.26 9.29 60.06 0.56 0.81 16 29 C 0.05 0.46 7.00 -2.44 -0.02 0.44 16 30 C -0.11 -1.01 6.97 -26.59 -0.19 -1.20 16 31 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 32 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.10 2.80 6.03 -51.93 -0.31 2.49 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.39 6.38 4.66 -40.82 -0.19 6.19 16 42 H 0.13 1.61 6.40 -52.49 -0.34 1.28 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.14 2.39 7.63 -52.49 -0.40 1.99 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 47 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.58 7.76 -51.93 -0.40 0.18 16 49 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 397.12 15.07 5.98 5.98 Total: -1.00 -33.03 397.12 -11.29 -44.33 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.22 Total: 6.26 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -3.06 Total: -0.86 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -1.05 Total: -60.76 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.03 -11.29 -44.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968601813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.927 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds