Wall clock time and date at job start Wed Apr 1 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.45197 * 2 1 4 4 C 1.53043 * 109.45940 * 119.96196 * 2 1 3 5 5 C 1.53202 * 109.31166 * 181.38577 * 4 2 1 6 6 N 1.46927 * 108.77199 * 305.36748 * 5 4 2 7 7 C 1.36942 * 120.62399 * 233.62694 * 6 5 4 8 8 H 1.07997 * 120.00497 * 27.67491 * 7 6 5 9 9 C 1.38811 * 119.99393 * 207.66623 * 7 6 5 10 10 N 1.31614 * 120.00440 * 17.36940 * 9 7 6 11 11 Si 1.86803 * 119.99622 * 197.36458 * 9 7 6 12 12 H 1.48493 * 109.47373 * 60.00309 * 11 9 7 13 13 H 1.48500 * 109.47051 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47207 * 300.00169 * 11 9 7 15 15 C 1.46918 * 118.74189 * 53.61222 * 6 5 4 16 16 C 1.53034 * 109.46332 * 240.03011 * 2 1 3 17 17 H 1.09009 * 109.52157 * 58.64461 * 16 2 1 18 18 N 1.46498 * 109.49653 * 298.57032 * 16 2 1 19 19 C 1.34788 * 119.99794 * 155.16139 * 18 16 2 20 20 O 1.21542 * 120.00189 * 359.97438 * 19 18 16 21 21 C 1.47862 * 119.99546 * 179.97438 * 19 18 16 22 22 C 1.39616 * 120.03115 * 0.24883 * 21 19 18 23 23 C 1.37997 * 119.74392 * 180.36601 * 22 21 19 24 24 C 1.38093 * 120.27646 * 359.78629 * 23 22 21 25 25 C 1.39080 * 120.71891 * 359.76958 * 24 23 22 26 26 C 1.39171 * 119.23494 * 0.26943 * 25 24 23 27 27 N 1.40098 * 110.94506 * 180.51973 * 25 24 23 28 28 C 1.46895 * 111.00583 * 103.48599 * 27 25 24 29 29 C 1.47900 * 107.88307 * 341.66639 * 27 25 24 30 30 C 1.51627 * 131.37137 * 179.59416 * 24 23 22 31 31 H 1.09004 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47017 * 299.96365 * 1 2 3 33 33 H 1.08998 * 109.47267 * 59.96712 * 1 2 3 34 34 H 1.08998 * 109.49754 * 61.43628 * 4 2 1 35 35 H 1.08995 * 109.52884 * 301.35400 * 4 2 1 36 36 H 1.09004 * 109.58335 * 185.58122 * 5 4 2 37 37 H 1.08996 * 109.58188 * 65.15223 * 5 4 2 38 38 H 0.96998 * 120.00419 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.58683 * 186.59862 * 15 6 5 40 40 H 1.08993 * 109.59005 * 66.17550 * 15 6 5 41 41 H 0.96999 * 120.00315 * 335.15045 * 18 16 2 42 42 H 1.08001 * 120.12574 * 0.11599 * 22 21 19 43 43 H 1.07999 * 119.85825 * 179.80002 * 23 22 21 44 44 H 1.07995 * 119.96064 * 179.86051 * 26 25 24 45 45 H 1.09006 * 109.46922 * 59.99818 * 28 27 25 46 46 H 1.08992 * 109.47782 * 179.97438 * 28 27 25 47 47 H 1.08998 * 109.47447 * 300.00370 * 28 27 25 48 48 H 1.09001 * 110.77437 * 145.59242 * 29 27 25 49 49 H 1.08999 * 110.77575 * 269.01594 * 29 27 25 50 50 H 1.08999 * 110.73892 * 77.89524 * 30 24 23 51 51 H 1.09004 * 110.89652 * 314.64135 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2643 6 7 4.0678 -1.2488 0.0000 7 6 4.9758 -2.2739 0.0002 8 1 5.0085 -2.9662 0.8284 9 6 5.8539 -2.4233 -1.0645 10 7 6.0602 -1.4217 -1.8929 11 14 6.7428 -4.0461 -1.3212 12 1 5.7473 -5.1294 -1.5226 13 1 7.6169 -3.9478 -2.5177 14 1 7.5714 -4.3510 -0.1272 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2500 17 1 1.6572 -0.2213 -2.1401 18 7 1.5801 -2.1117 -1.2341 19 6 1.4547 -2.7932 -2.3902 20 8 1.7226 -2.2537 -3.4458 21 6 0.9912 -4.1972 -2.3741 22 6 0.6783 -4.8159 -1.1622 23 6 0.2534 -6.1288 -1.1534 24 6 0.1330 -6.8295 -2.3372 25 6 0.4317 -6.2256 -3.5539 26 6 0.8614 -4.9019 -3.5683 27 7 0.2283 -7.1144 -4.6175 28 6 -1.0201 -6.8078 -5.3285 29 6 0.2001 -8.4858 -4.0644 30 6 -0.2944 -8.2570 -2.6177 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8904 33 1 -0.3634 0.5143 -0.8897 34 1 1.6978 -1.7555 1.2384 35 1 1.6572 -0.2212 2.1402 36 1 3.9417 -1.2844 2.0985 37 1 3.9142 0.3410 1.3673 38 1 6.6741 -1.5259 -2.6366 39 1 3.9417 -1.2845 -2.0983 40 1 3.9143 0.3409 -1.3673 41 1 1.3660 -2.5422 -0.3916 42 1 0.7722 -4.2702 -0.2349 43 1 0.0140 -6.6101 -0.2167 44 1 1.0987 -4.4221 -4.5062 45 1 -0.9728 -5.7935 -5.7248 46 1 -1.1532 -7.5124 -6.1493 47 1 -1.8604 -6.8896 -4.6391 48 1 -0.4999 -9.1116 -4.6178 49 1 1.1980 -8.9243 -4.0671 50 1 -1.3787 -8.3536 -2.5607 51 1 0.1901 -8.9502 -1.9300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968601813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:18 Heat of formation + Delta-G solvation = 7.735740 kcal Electronic energy + Delta-G solvation = -31394.814702 eV Core-core repulsion = 27486.759421 eV Total energy + Delta-G solvation = -3908.055282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94478 -41.02123 -39.21166 -37.49226 -35.94862 -34.38624 -33.40649 -32.84068 -31.37468 -30.79275 -29.84762 -28.86680 -26.86766 -25.93724 -24.91309 -23.61274 -23.30699 -22.71392 -22.01180 -21.31092 -20.30174 -18.83482 -18.63990 -17.26729 -16.98649 -16.84344 -16.77233 -16.40114 -15.95555 -15.76165 -15.63094 -15.14187 -15.02982 -14.82140 -14.69498 -14.60877 -14.56660 -14.11329 -14.01154 -13.60847 -13.46713 -13.30778 -13.10999 -13.03652 -12.96270 -12.75408 -12.64814 -12.61481 -12.48363 -12.27924 -12.12520 -12.01345 -11.94532 -11.56227 -11.32111 -11.06980 -10.96052 -10.53527 -10.51383 -10.06352 -9.80691 -8.97488 -8.64817 -7.86909 -5.30848 -0.21042 0.27485 1.37265 1.43201 1.46608 1.82695 2.21452 2.47510 2.67846 2.81760 3.29476 3.50156 3.68392 3.72853 3.81102 3.90724 3.96195 4.00014 4.07797 4.13370 4.18063 4.24268 4.42649 4.47677 4.52108 4.57170 4.67563 4.71153 4.72223 4.78040 4.81464 4.88130 4.90241 4.93859 4.96599 5.06017 5.09703 5.17595 5.22469 5.24664 5.27152 5.29435 5.34094 5.47126 5.51939 5.57846 5.60153 5.71353 5.72857 5.91530 6.14171 6.38594 6.64864 7.14085 7.31229 7.88080 8.38401 9.17957 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.004070 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.741207 B = 6878.112075 C = 8269.867037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.077 0.923 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.248 4.248 8 H 0.072 0.928 9 C -0.049 4.049 10 N -0.934 5.934 11 Si 0.950 3.050 12 H -0.286 1.286 13 H -0.302 1.302 14 H -0.266 1.266 15 C 0.171 3.829 16 C 0.136 3.864 17 H 0.062 0.938 18 N -0.678 5.678 19 C 0.549 3.451 20 O -0.592 6.592 21 C -0.129 4.129 22 C -0.093 4.093 23 C -0.090 4.090 24 C -0.121 4.121 25 C 0.068 3.932 26 C -0.080 4.080 27 N -0.519 5.519 28 C 0.028 3.972 29 C 0.046 3.954 30 C -0.103 4.103 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.014 0.986 38 H 0.244 0.756 39 H 0.046 0.954 40 H -0.002 1.002 41 H 0.406 0.594 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.107 0.893 45 H 0.056 0.944 46 H 0.097 0.903 47 H 0.043 0.957 48 H 0.115 0.885 49 H 0.085 0.915 50 H 0.104 0.896 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.487 -12.066 4.258 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.096 0.904 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.379 4.379 8 H 0.090 0.910 9 C -0.245 4.245 10 N -0.580 5.580 11 Si 0.779 3.221 12 H -0.212 1.212 13 H -0.229 1.229 14 H -0.191 1.191 15 C 0.043 3.957 16 C 0.029 3.971 17 H 0.080 0.920 18 N -0.329 5.329 19 C 0.337 3.663 20 O -0.474 6.474 21 C -0.133 4.133 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.028 4.028 26 C -0.101 4.101 27 N -0.237 5.237 28 C -0.117 4.117 29 C -0.080 4.080 30 C -0.140 4.140 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.016 0.984 41 H 0.245 0.755 42 H 0.165 0.835 43 H 0.182 0.818 44 H 0.126 0.874 45 H 0.075 0.925 46 H 0.116 0.884 47 H 0.062 0.938 48 H 0.133 0.867 49 H 0.104 0.896 50 H 0.122 0.878 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.795 -11.635 3.004 23.157 hybrid contribution 0.887 -0.295 -0.175 0.952 sum -18.907 -11.930 2.829 22.535 Atomic orbital electron populations 1.21768 0.92993 1.02183 1.02316 1.21278 0.96922 0.99172 0.93236 0.90419 1.21973 0.95572 1.00470 0.97465 1.21171 0.93752 0.95967 0.88087 1.44164 1.48078 1.39422 1.00629 1.19402 1.09239 1.03566 1.05668 0.91021 1.25667 0.98852 0.99597 1.00359 1.70156 1.38682 1.30839 1.18353 0.85595 0.78294 0.81070 0.77170 1.21215 1.22907 1.19076 1.20864 0.90052 0.94999 0.89736 1.21525 0.95277 0.81451 0.98816 0.92014 1.45580 1.65569 1.13523 1.08216 1.18624 0.77131 0.86577 0.83952 1.90704 1.53088 1.71039 1.32594 1.19679 1.04996 0.93470 0.95157 1.21433 0.97632 0.95747 0.96382 1.20687 0.98807 0.92932 0.98395 1.21670 0.98902 0.98289 0.93495 1.19508 0.99384 0.92205 0.91658 1.20435 0.98862 0.93177 0.97593 1.60129 1.36054 1.02971 1.24522 1.22523 0.87972 1.02698 0.98543 1.23353 1.03358 0.87941 0.93363 1.21795 1.02970 0.91054 0.98204 0.92498 0.90263 0.93323 0.91903 0.88761 0.92230 0.96846 0.94715 0.93578 0.98445 0.75532 0.83491 0.81810 0.87442 0.92503 0.88397 0.93822 0.86653 0.89645 0.87758 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.05 71.98 0.65 -2.37 16 2 C -0.09 -2.56 2.48 -10.77 -0.03 -2.59 16 3 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 4 C -0.12 -3.23 5.20 30.68 0.16 -3.07 16 5 C 0.14 5.16 6.52 86.37 0.56 5.72 16 6 N -0.60 -29.54 2.91 -699.10 -2.04 -31.57 16 7 C -0.25 -13.68 9.59 84.03 0.81 -12.87 16 8 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 9 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 10 N -0.93 -59.21 11.19 21.65 0.24 -58.97 16 11 Si 0.95 47.86 29.59 68.60 2.03 49.89 16 12 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 13 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 15 C 0.17 8.71 4.91 86.36 0.42 9.14 16 16 C 0.14 5.35 2.24 45.07 0.10 5.46 16 17 H 0.06 2.62 7.58 -2.38 -0.02 2.60 16 18 N -0.68 -25.06 4.20 -445.01 -1.87 -26.93 16 19 C 0.55 23.09 7.74 86.79 0.67 23.77 16 20 O -0.59 -30.21 15.99 -3.85 -0.06 -30.28 16 21 C -0.13 -4.57 5.86 -20.15 -0.12 -4.69 16 22 C -0.09 -2.48 9.55 22.55 0.22 -2.27 16 23 C -0.09 -1.94 10.01 22.18 0.22 -1.71 16 24 C -0.12 -2.71 6.23 -19.40 -0.12 -2.83 16 25 C 0.07 1.94 5.58 38.25 0.21 2.15 16 26 C -0.08 -2.82 9.62 22.74 0.22 -2.60 16 27 N -0.52 -12.17 5.33 -713.53 -3.80 -15.97 16 28 C 0.03 0.51 9.29 127.69 1.19 1.69 16 29 C 0.05 0.71 7.00 86.65 0.61 1.32 16 30 C -0.10 -1.43 6.97 30.68 0.21 -1.22 16 31 H 0.06 1.22 7.54 -2.38 -0.02 1.20 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.66 6.40 -2.39 -0.02 1.65 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 2.19 7.93 -2.38 -0.02 2.17 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.05 2.84 6.03 -2.39 -0.01 2.83 16 40 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.41 12.62 4.66 -92.71 -0.43 12.19 16 42 H 0.15 3.26 6.40 -2.91 -0.02 3.24 16 43 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 44 H 0.11 4.27 7.63 -2.91 -0.02 4.25 16 45 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.10 1.28 8.11 -2.39 -0.02 1.26 16 47 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.12 1.08 7.76 -2.39 -0.02 1.06 16 49 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -79.52 397.12 1.40 -78.13 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.49 Total: 25.16 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.40 Total: 10.54 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -7.47 Total: -133.45 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.06 Total: -30.28 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -79.52 1.40 -78.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968601813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.862 kcal (2) G-P(sol) polarization free energy of solvation -79.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds