Wall clock time and date at job start Wed Apr 1 2020 03:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09002 * 109.46392 * 2 1 4 4 C 1.53042 * 109.46266 * 119.97835 * 2 1 3 5 5 C 1.53186 * 109.31404 * 181.37143 * 4 2 1 6 6 N 1.46924 * 108.77902 * 305.36250 * 5 4 2 7 7 C 1.36937 * 120.63714 * 233.63300 * 6 5 4 8 8 H 1.07994 * 120.00336 * 150.00918 * 7 6 5 9 9 C 1.38810 * 119.99372 * 330.01668 * 7 6 5 10 10 N 1.31614 * 120.00459 * 346.93532 * 9 7 6 11 11 Si 1.86810 * 119.99726 * 166.93713 * 9 7 6 12 12 H 1.48496 * 109.47199 * 89.99339 * 11 9 7 13 13 H 1.48503 * 109.46975 * 209.99763 * 11 9 7 14 14 H 1.48499 * 109.47039 * 329.99673 * 11 9 7 15 15 C 1.46933 * 118.73443 * 53.60892 * 6 5 4 16 16 C 1.53191 * 108.89417 * 306.32272 * 15 6 5 17 17 H 1.08999 * 109.50063 * 174.66170 * 16 15 6 18 18 N 1.46504 * 109.49592 * 294.75679 * 16 15 6 19 19 C 1.34782 * 119.99677 * 274.99863 * 18 16 15 20 20 O 1.21271 * 120.00122 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99427 * 180.02562 * 19 18 16 22 22 N 1.46903 * 109.46629 * 185.31184 * 21 19 18 23 23 C 1.47899 * 110.99902 * 75.30320 * 22 21 19 24 24 C 1.54598 * 102.63440 * 94.67795 * 23 22 21 25 25 C 1.51575 * 102.81626 * 25.59774 * 24 23 22 26 26 C 1.37915 * 131.56169 * 163.78498 * 25 24 23 27 27 C 1.38303 * 120.07935 * 180.28163 * 26 25 24 28 28 C 1.38313 * 119.87983 * 0.02562 * 27 26 25 29 29 C 1.37908 * 120.26401 * 359.85477 * 28 27 26 30 30 C 1.38958 * 107.94700 * 343.80900 * 25 24 23 31 31 H 1.08999 * 109.47432 * 300.02455 * 1 2 3 32 32 H 1.09007 * 109.47304 * 60.02150 * 1 2 3 33 33 H 1.08995 * 109.47613 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.49508 * 61.41553 * 4 2 1 35 35 H 1.09000 * 109.52019 * 301.34128 * 4 2 1 36 36 H 1.09001 * 109.58829 * 185.57596 * 5 4 2 37 37 H 1.08999 * 109.70979 * 65.22120 * 5 4 2 38 38 H 0.97006 * 120.00034 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.58501 * 66.18542 * 15 6 5 40 40 H 1.09009 * 109.58269 * 186.46366 * 15 6 5 41 41 H 0.96998 * 120.00078 * 95.00469 * 18 16 15 42 42 H 1.08993 * 109.47365 * 305.30955 * 21 19 18 43 43 H 1.09001 * 109.46909 * 65.31665 * 21 19 18 44 44 H 1.09007 * 110.77483 * 212.96641 * 23 22 21 45 45 H 1.09004 * 110.77756 * 336.19659 * 23 22 21 46 46 H 1.09002 * 110.74417 * 143.92818 * 24 23 22 47 47 H 1.08995 * 110.74323 * 267.26358 * 24 23 22 48 48 H 1.07996 * 119.96198 * 0.29963 * 26 25 24 49 49 H 1.07999 * 120.05825 * 179.97438 * 27 26 25 50 50 H 1.07998 * 119.86234 * 179.87360 * 28 27 26 51 51 H 1.08001 * 119.89451 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 1.2499 5 6 3.5713 -0.6891 1.2639 6 7 4.0676 -1.2493 -0.0004 7 6 4.9752 -2.2747 -0.0008 8 1 4.9832 -2.9886 -0.8110 9 6 5.8850 -2.3964 1.0405 10 7 6.0538 -1.4024 1.8866 11 14 6.8700 -3.9710 1.2410 12 1 8.1379 -3.8627 0.4756 13 1 7.1761 -4.1838 2.6785 14 1 6.0788 -5.1184 0.7283 15 6 3.5710 -0.6888 -1.2646 16 6 2.0395 -0.7210 -1.2539 17 1 1.6588 -0.2216 -2.1448 18 7 1.5798 -2.1119 -1.2381 19 6 1.4570 -2.7942 -2.3940 20 8 1.7274 -2.2568 -3.4470 21 6 0.9835 -4.2248 -2.3778 22 7 1.0560 -4.7799 -3.7360 23 6 2.4541 -5.0849 -4.1099 24 6 2.5824 -6.5821 -3.7465 25 6 1.1519 -7.0745 -3.8397 26 6 0.6256 -8.3467 -3.9212 27 6 -0.7432 -8.5266 -4.0037 28 6 -1.5837 -7.4282 -4.0048 29 6 -1.0626 -6.1541 -3.9209 30 6 0.3158 -5.9646 -3.8341 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5135 -0.8902 33 1 -0.3634 -1.0276 0.0005 34 1 1.6975 -1.7558 1.2381 35 1 1.6573 -0.2215 2.1400 36 1 3.9416 -1.2852 2.0979 37 1 3.9166 0.3394 1.3683 38 1 6.6899 -1.4874 2.6140 39 1 3.9142 0.3406 -1.3676 40 1 3.9432 -1.2833 -2.0991 41 1 1.3637 -2.5418 -0.3959 42 1 1.6177 -4.8099 -1.7119 43 1 -0.0469 -4.2625 -2.0244 44 1 2.6111 -4.9313 -5.1776 45 1 3.1506 -4.4815 -3.5276 46 1 3.2168 -7.1009 -4.4651 47 1 2.9667 -6.7019 -2.7336 48 1 1.2831 -9.2034 -3.9204 49 1 -1.1549 -9.5230 -4.0680 50 1 -2.6524 -7.5689 -4.0713 51 1 -1.7245 -5.3007 -3.9218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968665798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:27 Heat of formation + Delta-G solvation = 28.877562 kcal Electronic energy + Delta-G solvation = -31150.628832 eV Core-core repulsion = 27243.490329 eV Total energy + Delta-G solvation = -3907.138503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.98595 -39.51343 -37.68407 -36.52975 -34.20111 -32.74187 -32.44323 -31.10741 -30.30515 -29.26320 -28.93908 -27.45886 -26.33891 -24.05025 -23.13803 -22.31066 -21.39481 -21.30628 -21.09814 -20.12338 -18.68519 -17.13836 -16.84841 -16.54272 -16.24931 -15.56540 -15.27042 -15.03541 -14.83680 -14.66657 -14.03479 -13.85689 -13.78551 -13.63832 -13.41041 -13.30864 -13.06015 -12.87943 -12.64043 -12.52509 -12.36880 -12.00906 -11.90524 -11.66976 -11.59595 -11.38681 -11.23655 -11.13531 -10.97250 -10.84921 -10.77563 -10.39553 -10.25391 -9.99224 -9.84927 -9.65146 -9.47544 -9.16120 -8.94247 -8.62166 -8.37833 -7.95682 -6.62826 -5.81083 -3.26244 1.16110 1.24573 3.05339 3.27807 3.33018 3.40208 3.40574 3.61358 3.87635 4.45460 4.49605 4.67286 4.86316 4.88927 4.99290 5.06162 5.13569 5.23119 5.29683 5.30364 5.33480 5.34844 5.39199 5.42621 5.47847 5.55206 5.69755 5.79967 5.83301 5.90248 5.95401 6.03568 6.04373 6.20370 6.22585 6.23673 6.31245 6.36294 6.42066 6.43672 6.58238 6.60984 6.65344 6.78370 6.80882 6.84884 7.11623 7.18734 7.32312 7.64437 7.76006 8.01603 8.44179 8.70786 9.19974 9.82044 10.39909 11.26848 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.003634 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.887154 B = 7703.651822 C = 9469.787559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.169 3.831 6 N -0.587 5.587 7 C -0.245 4.245 8 H 0.060 0.940 9 C 0.004 3.996 10 N -0.904 5.904 11 Si 0.900 3.100 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.135 3.865 16 C 0.138 3.862 17 H 0.077 0.923 18 N -0.701 5.701 19 C 0.513 3.487 20 O -0.531 6.531 21 C 0.039 3.961 22 N -0.472 5.472 23 C 0.059 3.941 24 C -0.115 4.115 25 C -0.136 4.136 26 C -0.090 4.090 27 C -0.135 4.135 28 C -0.106 4.106 29 C -0.112 4.112 30 C 0.094 3.906 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.018 0.982 38 H 0.253 0.747 39 H 0.025 0.975 40 H 0.058 0.942 41 H 0.397 0.603 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.119 0.881 49 H 0.123 0.877 50 H 0.125 0.875 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.654 -8.883 -6.803 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.043 3.957 6 N -0.309 5.309 7 C -0.375 4.375 8 H 0.078 0.922 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.730 3.270 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.207 1.207 15 C 0.008 3.992 16 C 0.032 3.968 17 H 0.095 0.905 18 N -0.353 5.353 19 C 0.297 3.703 20 O -0.408 6.408 21 C -0.090 4.090 22 N -0.188 5.188 23 C -0.068 4.068 24 C -0.153 4.153 25 C -0.138 4.138 26 C -0.109 4.109 27 C -0.154 4.154 28 C -0.125 4.125 29 C -0.132 4.132 30 C -0.002 4.002 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.232 0.768 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.137 0.863 49 H 0.141 0.859 50 H 0.143 0.857 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.495 -8.013 -7.735 18.280 hybrid contribution 0.830 -1.541 1.116 2.076 sum -13.665 -9.554 -6.619 17.940 Atomic orbital electron populations 1.21840 0.96054 1.01280 1.00910 1.21366 0.94527 0.99842 0.95527 0.90523 1.22257 1.00987 0.98840 0.95478 1.20812 0.87062 0.97397 0.90453 1.43958 1.48342 1.39479 0.99147 1.19085 1.08493 1.02226 1.07734 0.92188 1.25081 0.97140 0.97334 0.99914 1.69984 1.37066 1.29708 1.18091 0.86341 0.80314 0.83337 0.77005 1.21393 1.21609 1.20667 1.21290 0.90477 0.96907 0.90567 1.21577 0.97076 0.80812 0.97380 0.90499 1.45863 1.67094 1.13984 1.08388 1.20189 0.78239 0.87639 0.84226 1.90673 1.49761 1.69618 1.30727 1.22086 1.03188 0.94308 0.89404 1.59679 1.10721 1.24923 1.23495 1.23140 0.87489 0.93262 1.02897 1.21782 0.93399 0.97097 1.03056 1.21084 0.96092 0.93864 1.02794 1.20405 0.95131 0.95517 0.99845 1.21033 0.93108 0.98801 1.02450 1.20907 0.99716 0.91914 0.99964 1.20518 0.92540 0.97546 1.02629 1.19616 0.93374 0.88626 0.98627 0.93069 0.93273 0.93118 0.93108 0.92969 0.89360 0.96384 0.93666 0.95767 0.92385 0.76752 0.90932 0.88181 0.89107 0.89130 0.89471 0.89784 0.86263 0.85917 0.85714 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.05 37.15 0.34 -1.48 16 2 C -0.09 -1.44 2.48 -90.42 -0.22 -1.66 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.14 -2.32 5.20 -26.61 -0.14 -2.46 16 5 C 0.17 3.76 5.27 -3.71 -0.02 3.74 16 6 N -0.59 -13.88 2.91 -172.32 -0.50 -14.38 16 7 C -0.25 -6.47 9.59 -15.06 -0.14 -6.62 16 8 H 0.06 1.59 7.86 -52.49 -0.41 1.18 16 9 C 0.00 0.10 5.00 -17.43 -0.09 0.01 16 10 N -0.90 -25.47 11.09 55.49 0.62 -24.86 16 11 Si 0.90 21.21 29.57 -169.99 -5.03 16.19 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.14 2.84 6.10 -3.71 -0.02 2.82 16 16 C 0.14 2.36 2.26 -67.65 -0.15 2.20 16 17 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 18 N -0.70 -11.17 4.26 -53.53 -0.23 -11.40 16 19 C 0.51 8.45 7.25 -10.98 -0.08 8.37 16 20 O -0.53 -10.54 15.58 5.57 0.09 -10.46 16 21 C 0.04 0.54 5.23 -4.97 -0.03 0.51 16 22 N -0.47 -6.74 4.60 -170.38 -0.78 -7.52 16 23 C 0.06 0.81 6.34 -2.43 -0.02 0.79 16 24 C -0.12 -1.35 6.93 -26.61 -0.18 -1.54 16 25 C -0.14 -1.64 6.23 -104.04 -0.65 -2.29 16 26 C -0.09 -0.94 10.03 -39.68 -0.40 -1.34 16 27 C -0.14 -1.26 10.06 -39.53 -0.40 -1.65 16 28 C -0.11 -1.00 10.02 -39.67 -0.40 -1.40 16 29 C -0.11 -1.26 10.05 -39.27 -0.39 -1.66 16 30 C 0.09 1.22 5.50 -83.41 -0.46 0.76 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.62 7.54 -51.93 -0.39 0.23 16 34 H 0.05 0.84 6.41 -51.93 -0.33 0.51 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 1.31 7.93 -51.92 -0.41 0.90 16 41 H 0.40 5.91 6.64 -40.82 -0.27 5.64 16 42 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 43 H 0.10 1.17 7.97 -51.93 -0.41 0.76 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.38 7.26 -51.93 -0.38 1.00 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 50 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 51 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -30.64 398.96 -11.64 -42.28 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -8.36 Total: 7.02 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.45 Total: -2.88 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.90 Total: -58.16 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.64 -11.64 -42.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968665798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.158 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds