Wall clock time and date at job start Wed Apr 1 2020 03:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09002 * 109.46392 * 2 1 4 4 C 1.53042 * 109.46266 * 119.97835 * 2 1 3 5 5 C 1.53186 * 109.31404 * 181.37143 * 4 2 1 6 6 N 1.46924 * 108.77902 * 305.36250 * 5 4 2 7 7 C 1.36937 * 120.63714 * 233.63300 * 6 5 4 8 8 H 1.07994 * 120.00336 * 150.00918 * 7 6 5 9 9 C 1.38810 * 119.99372 * 330.01668 * 7 6 5 10 10 N 1.31614 * 120.00459 * 346.93532 * 9 7 6 11 11 Si 1.86810 * 119.99726 * 166.93713 * 9 7 6 12 12 H 1.48496 * 109.47199 * 89.99339 * 11 9 7 13 13 H 1.48503 * 109.46975 * 209.99763 * 11 9 7 14 14 H 1.48499 * 109.47039 * 329.99673 * 11 9 7 15 15 C 1.46933 * 118.73443 * 53.60892 * 6 5 4 16 16 C 1.53191 * 108.89417 * 306.32272 * 15 6 5 17 17 H 1.08999 * 109.50063 * 174.66170 * 16 15 6 18 18 N 1.46504 * 109.49592 * 294.75679 * 16 15 6 19 19 C 1.34782 * 119.99677 * 274.99863 * 18 16 15 20 20 O 1.21271 * 120.00122 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99427 * 180.02562 * 19 18 16 22 22 N 1.46903 * 109.46629 * 185.31184 * 21 19 18 23 23 C 1.47899 * 110.99902 * 75.30320 * 22 21 19 24 24 C 1.54598 * 102.63440 * 94.67795 * 23 22 21 25 25 C 1.51575 * 102.81626 * 25.59774 * 24 23 22 26 26 C 1.37915 * 131.56169 * 163.78498 * 25 24 23 27 27 C 1.38303 * 120.07935 * 180.28163 * 26 25 24 28 28 C 1.38313 * 119.87983 * 0.02562 * 27 26 25 29 29 C 1.37908 * 120.26401 * 359.85477 * 28 27 26 30 30 C 1.38958 * 107.94700 * 343.80900 * 25 24 23 31 31 H 1.08999 * 109.47432 * 300.02455 * 1 2 3 32 32 H 1.09007 * 109.47304 * 60.02150 * 1 2 3 33 33 H 1.08995 * 109.47613 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.49508 * 61.41553 * 4 2 1 35 35 H 1.09000 * 109.52019 * 301.34128 * 4 2 1 36 36 H 1.09001 * 109.58829 * 185.57596 * 5 4 2 37 37 H 1.08999 * 109.70979 * 65.22120 * 5 4 2 38 38 H 0.97006 * 120.00034 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.58501 * 66.18542 * 15 6 5 40 40 H 1.09009 * 109.58269 * 186.46366 * 15 6 5 41 41 H 0.96998 * 120.00078 * 95.00469 * 18 16 15 42 42 H 1.08993 * 109.47365 * 305.30955 * 21 19 18 43 43 H 1.09001 * 109.46909 * 65.31665 * 21 19 18 44 44 H 1.09007 * 110.77483 * 212.96641 * 23 22 21 45 45 H 1.09004 * 110.77756 * 336.19659 * 23 22 21 46 46 H 1.09002 * 110.74417 * 143.92818 * 24 23 22 47 47 H 1.08995 * 110.74323 * 267.26358 * 24 23 22 48 48 H 1.07996 * 119.96198 * 0.29963 * 26 25 24 49 49 H 1.07999 * 120.05825 * 179.97438 * 27 26 25 50 50 H 1.07998 * 119.86234 * 179.87360 * 28 27 26 51 51 H 1.08001 * 119.89451 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 1.2499 5 6 3.5713 -0.6891 1.2639 6 7 4.0676 -1.2493 -0.0004 7 6 4.9752 -2.2747 -0.0008 8 1 4.9832 -2.9886 -0.8110 9 6 5.8850 -2.3964 1.0405 10 7 6.0538 -1.4024 1.8866 11 14 6.8700 -3.9710 1.2410 12 1 8.1379 -3.8627 0.4756 13 1 7.1761 -4.1838 2.6785 14 1 6.0788 -5.1184 0.7283 15 6 3.5710 -0.6888 -1.2646 16 6 2.0395 -0.7210 -1.2539 17 1 1.6588 -0.2216 -2.1448 18 7 1.5798 -2.1119 -1.2381 19 6 1.4570 -2.7942 -2.3940 20 8 1.7274 -2.2568 -3.4470 21 6 0.9835 -4.2248 -2.3778 22 7 1.0560 -4.7799 -3.7360 23 6 2.4541 -5.0849 -4.1099 24 6 2.5824 -6.5821 -3.7465 25 6 1.1519 -7.0745 -3.8397 26 6 0.6256 -8.3467 -3.9212 27 6 -0.7432 -8.5266 -4.0037 28 6 -1.5837 -7.4282 -4.0048 29 6 -1.0626 -6.1541 -3.9209 30 6 0.3158 -5.9646 -3.8341 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5135 -0.8902 33 1 -0.3634 -1.0276 0.0005 34 1 1.6975 -1.7558 1.2381 35 1 1.6573 -0.2215 2.1400 36 1 3.9416 -1.2852 2.0979 37 1 3.9166 0.3394 1.3683 38 1 6.6899 -1.4874 2.6140 39 1 3.9142 0.3406 -1.3676 40 1 3.9432 -1.2833 -2.0991 41 1 1.3637 -2.5418 -0.3959 42 1 1.6177 -4.8099 -1.7119 43 1 -0.0469 -4.2625 -2.0244 44 1 2.6111 -4.9313 -5.1776 45 1 3.1506 -4.4815 -3.5276 46 1 3.2168 -7.1009 -4.4651 47 1 2.9667 -6.7019 -2.7336 48 1 1.2831 -9.2034 -3.9204 49 1 -1.1549 -9.5230 -4.0680 50 1 -2.6524 -7.5689 -4.0713 51 1 -1.7245 -5.3007 -3.9218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968665798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:26 Heat of formation + Delta-G solvation = 11.637140 kcal Electronic energy + Delta-G solvation = -31151.376433 eV Core-core repulsion = 27243.490329 eV Total energy + Delta-G solvation = -3907.886104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96524 -40.85649 -39.08038 -37.50854 -35.95238 -34.12982 -33.40600 -32.97284 -31.42268 -30.56438 -29.85335 -28.95400 -27.55573 -25.76651 -24.07825 -23.81190 -22.78061 -22.41998 -22.13943 -21.30614 -20.25247 -18.67924 -18.12623 -17.84708 -17.19204 -16.91617 -16.53392 -16.23071 -16.17239 -15.95044 -15.63711 -15.23037 -15.05458 -14.81037 -14.66766 -14.53239 -14.38641 -14.09051 -13.85335 -13.60240 -13.47852 -13.28972 -13.23877 -12.99796 -12.96242 -12.74679 -12.63439 -12.45214 -12.37854 -12.21062 -12.19973 -11.91029 -11.79453 -11.62971 -11.28243 -11.07706 -10.98620 -10.55813 -10.31752 -9.93370 -9.73198 -8.88613 -8.59347 -7.86479 -5.34574 0.34794 0.45881 1.43280 1.44918 1.53180 1.73159 2.14502 2.48800 2.74728 2.82929 3.28461 3.58973 3.68375 3.73194 3.78362 3.90292 3.97357 4.03294 4.10314 4.12823 4.17408 4.24993 4.29177 4.49210 4.51952 4.53307 4.64414 4.67770 4.72099 4.77670 4.80012 4.83030 4.89194 4.94151 5.01749 5.03690 5.09102 5.14472 5.24019 5.28285 5.39151 5.47472 5.50231 5.53391 5.60844 5.64500 5.69179 5.78455 5.81105 5.86152 6.29147 6.40230 6.71174 7.16718 7.39073 7.85977 8.38528 9.18354 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.003634 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.887154 B = 7703.651822 C = 9469.787559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.075 0.925 4 C -0.122 4.122 5 C 0.174 3.826 6 N -0.597 5.597 7 C -0.251 4.251 8 H 0.052 0.948 9 C -0.044 4.044 10 N -0.933 5.933 11 Si 0.960 3.040 12 H -0.290 1.290 13 H -0.290 1.290 14 H -0.270 1.270 15 C 0.136 3.864 16 C 0.149 3.851 17 H 0.077 0.923 18 N -0.695 5.695 19 C 0.512 3.488 20 O -0.568 6.568 21 C 0.048 3.952 22 N -0.487 5.487 23 C 0.058 3.942 24 C -0.107 4.107 25 C -0.150 4.150 26 C -0.097 4.097 27 C -0.130 4.130 28 C -0.104 4.104 29 C -0.121 4.121 30 C 0.067 3.933 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.057 0.943 37 H -0.006 1.006 38 H 0.250 0.750 39 H 0.016 0.984 40 H 0.032 0.968 41 H 0.405 0.595 42 H 0.074 0.926 43 H 0.123 0.877 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.137 0.863 49 H 0.152 0.848 50 H 0.154 0.846 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.444 -10.935 -6.702 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 H 0.093 0.907 4 C -0.161 4.161 5 C 0.049 3.951 6 N -0.321 5.321 7 C -0.382 4.382 8 H 0.070 0.930 9 C -0.239 4.239 10 N -0.579 5.579 11 Si 0.789 3.211 12 H -0.217 1.217 13 H -0.216 1.216 14 H -0.195 1.195 15 C 0.009 3.991 16 C 0.043 3.957 17 H 0.095 0.905 18 N -0.347 5.347 19 C 0.298 3.702 20 O -0.447 6.447 21 C -0.081 4.081 22 N -0.204 5.204 23 C -0.069 4.069 24 C -0.146 4.146 25 C -0.153 4.153 26 C -0.116 4.116 27 C -0.149 4.149 28 C -0.122 4.122 29 C -0.141 4.141 30 C -0.029 4.029 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.012 0.988 38 H 0.059 0.941 39 H 0.034 0.966 40 H 0.051 0.949 41 H 0.241 0.759 42 H 0.092 0.908 43 H 0.141 0.859 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.119 0.881 47 H 0.098 0.902 48 H 0.155 0.845 49 H 0.170 0.830 50 H 0.171 0.829 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.320 -10.079 -7.632 21.444 hybrid contribution 1.708 -0.900 1.009 2.179 sum -15.612 -10.979 -6.623 20.202 Atomic orbital electron populations 1.21745 0.92983 1.02209 1.02183 1.21298 0.96889 0.99023 0.93267 0.90692 1.22062 0.96561 1.00045 0.97422 1.20666 0.90706 0.95013 0.88726 1.44120 1.48355 1.39237 1.00383 1.19265 1.08880 1.02655 1.07363 0.92982 1.25733 0.98299 1.00005 0.99905 1.70138 1.37806 1.31366 1.18563 0.85391 0.78739 0.80403 0.76598 1.21735 1.21633 1.19524 1.21315 0.93447 0.95602 0.88687 1.21317 0.93863 0.81946 0.98612 0.90502 1.45793 1.66573 1.13539 1.08749 1.20717 0.77257 0.88612 0.83597 1.90653 1.51362 1.70657 1.32057 1.22022 1.04297 0.92007 0.89743 1.59682 1.10832 1.26210 1.23633 1.23033 0.87302 0.94473 1.02123 1.21690 0.94115 0.95619 1.03129 1.21184 0.95723 0.94569 1.03824 1.20709 0.96195 0.95293 0.99364 1.21440 0.92584 1.00224 1.00624 1.21276 1.01307 0.91098 0.98522 1.20745 0.91892 0.98767 1.02696 1.19777 0.94233 0.88183 1.00659 0.91235 0.92616 0.92362 0.92269 0.90643 0.92497 0.98839 0.94122 0.96603 0.94895 0.75861 0.90813 0.85864 0.89615 0.91560 0.88089 0.90184 0.84528 0.82983 0.82864 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.05 71.98 0.65 -2.30 16 2 C -0.09 -2.49 2.48 -10.67 -0.03 -2.52 16 3 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.12 -3.98 5.20 30.67 0.16 -3.82 16 5 C 0.17 7.92 5.27 86.36 0.46 8.38 16 6 N -0.60 -29.10 2.91 -699.09 -2.03 -31.14 16 7 C -0.25 -13.62 9.59 84.03 0.81 -12.81 16 8 H 0.05 2.86 7.86 -2.91 -0.02 2.84 16 9 C -0.04 -2.41 5.00 84.86 0.42 -1.98 16 10 N -0.93 -54.07 11.09 21.65 0.24 -53.83 16 11 Si 0.96 44.36 29.57 68.60 2.03 46.38 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 C 0.14 5.94 6.10 86.36 0.53 6.46 16 16 C 0.15 5.08 2.26 45.17 0.10 5.18 16 17 H 0.08 2.68 7.58 -2.39 -0.02 2.66 16 18 N -0.69 -21.78 4.26 -441.66 -1.88 -23.66 16 19 C 0.51 16.96 7.25 87.66 0.64 17.60 16 20 O -0.57 -23.14 15.58 -3.00 -0.05 -23.18 16 21 C 0.05 1.30 5.23 85.56 0.45 1.75 16 22 N -0.49 -13.94 4.60 -692.97 -3.19 -17.13 16 23 C 0.06 1.64 6.34 86.65 0.55 2.19 16 24 C -0.11 -2.51 6.93 30.67 0.21 -2.29 16 25 C -0.15 -3.46 6.23 -19.49 -0.12 -3.58 16 26 C -0.10 -1.78 10.03 22.21 0.22 -1.55 16 27 C -0.13 -1.96 10.06 22.30 0.22 -1.73 16 28 C -0.10 -1.62 10.02 22.21 0.22 -1.39 16 29 C -0.12 -2.48 10.05 22.47 0.23 -2.26 16 30 C 0.07 1.67 5.50 38.28 0.21 1.88 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 1.21 7.54 -2.39 -0.02 1.19 16 34 H 0.06 1.85 6.41 -2.39 -0.02 1.83 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.06 2.95 6.07 -2.39 -0.01 2.94 16 37 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.03 1.56 7.93 -2.38 -0.02 1.55 16 41 H 0.40 11.50 6.64 -92.71 -0.62 10.89 16 42 H 0.07 1.96 7.96 -2.39 -0.02 1.94 16 43 H 0.12 2.70 7.97 -2.39 -0.02 2.68 16 44 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.07 2.16 7.26 -2.38 -0.02 2.15 16 46 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 49 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 50 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 51 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -68.77 398.96 1.35 -67.43 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.30 Total: 27.93 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 5.93 Total: 7.20 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -6.87 Total: -125.76 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.77 1.35 -67.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968665798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.063 kcal (2) G-P(sol) polarization free energy of solvation -68.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds