Wall clock time and date at job start Wed Apr 1 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99847 * 2 1 4 4 N 1.46497 * 109.47078 * 125.27986 * 3 2 1 5 5 C 1.35534 * 125.67906 * 260.79432 * 4 3 2 6 6 C 1.35451 * 108.87489 * 179.97438 * 5 4 3 7 7 C 1.39836 * 107.86218 * 359.97438 * 6 5 4 8 8 C 1.37655 * 125.68078 * 80.47649 * 4 3 2 9 9 C 1.46676 * 126.22961 * 0.02562 * 8 4 3 10 10 O 1.21695 * 120.00518 * 5.20782 * 9 8 4 11 11 N 1.34781 * 120.00140 * 185.20065 * 9 8 4 12 12 C 1.46490 * 120.00431 * 185.11746 * 11 9 8 13 13 H 1.08997 * 109.02122 * 34.99617 * 12 11 9 14 14 C 1.52533 * 109.02906 * 276.06543 * 12 11 9 15 15 C 1.52817 * 111.81331 * 293.35076 * 14 12 11 16 16 C 1.51432 * 107.45100 * 303.04525 * 15 14 12 17 17 H 1.08997 * 109.87374 * 305.48903 * 16 15 14 18 18 C 1.52324 * 117.81370 * 178.65936 * 16 15 14 19 19 N 1.48244 * 105.86491 * 214.48467 * 18 16 15 20 20 C 1.36937 * 125.77960 * 183.18722 * 19 18 16 21 21 H 1.08002 * 119.99702 * 179.97438 * 20 19 18 22 22 C 1.38812 * 120.00311 * 359.97438 * 20 19 18 23 23 N 1.31614 * 119.99892 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99951 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47186 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46946 * 120.00036 * 24 22 20 27 27 H 1.48496 * 109.47013 * 240.00062 * 24 22 20 28 28 C 1.48657 * 108.43439 * 3.19140 * 19 18 16 29 29 C 1.53063 * 103.44382 * 24.37314 * 28 19 18 30 30 H 1.08992 * 111.37021 * 75.99874 * 29 28 19 31 31 C 1.51628 * 116.66753 * 204.13651 * 29 28 19 32 32 H 1.07997 * 120.00058 * 179.71960 * 1 2 3 33 33 H 1.07998 * 119.99828 * 359.72194 * 1 2 3 34 34 H 1.07998 * 119.99828 * 180.27806 * 2 1 3 35 35 H 1.09000 * 109.47010 * 245.27651 * 3 2 1 36 36 H 1.09001 * 109.47667 * 5.27520 * 3 2 1 37 37 H 1.08004 * 125.56353 * 359.96797 * 5 4 3 38 38 H 1.07997 * 126.06700 * 179.97438 * 6 5 4 39 39 H 1.08006 * 126.45206 * 179.97438 * 7 6 5 40 40 H 0.97002 * 119.99272 * 5.11214 * 11 9 8 41 41 H 1.09000 * 109.04471 * 54.03296 * 14 12 11 42 42 H 1.09004 * 109.04311 * 172.91577 * 14 12 11 43 43 H 1.09003 * 110.01814 * 183.37932 * 15 14 12 44 44 H 1.08996 * 109.46080 * 62.40684 * 15 14 12 45 45 H 1.08996 * 110.17055 * 333.58410 * 18 16 15 46 46 H 1.09004 * 110.17232 * 95.31499 * 18 16 15 47 47 H 0.97005 * 119.99708 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.62216 * 265.88597 * 28 19 18 49 49 H 1.08997 * 110.62861 * 142.86732 * 28 19 18 50 50 H 1.08996 * 109.94116 * 56.84471 * 31 29 28 51 51 H 1.09000 * 110.00881 * 295.64838 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9985 1.3291 1.1275 5 6 2.7884 1.9465 2.3157 6 6 3.8700 1.7523 3.1077 7 6 4.7936 0.9845 2.3916 8 6 4.2342 0.7234 1.1589 9 6 4.8456 -0.0554 0.0768 10 8 4.2918 -0.1347 -1.0040 11 7 6.0210 -0.6833 0.2792 12 6 6.6871 -1.3672 -0.8319 13 1 6.5092 -0.8085 -1.7507 14 6 6.0986 -2.7667 -0.9789 15 6 6.4311 -3.6516 0.2218 16 6 7.9391 -3.6866 0.3564 17 1 8.3877 -4.0058 -0.5842 18 6 8.5313 -4.4855 1.5102 19 7 9.7445 -3.7466 1.9342 20 6 10.6240 -4.1421 2.9064 21 1 11.4816 -3.5289 3.1407 22 6 10.4132 -5.3312 3.5910 23 7 9.3678 -6.0782 3.3059 24 14 11.6133 -5.8710 4.9168 25 1 12.6958 -4.8625 5.0450 26 1 10.8973 -5.9952 6.2118 27 1 12.2006 -7.1840 4.5479 28 6 9.8445 -2.5035 1.1251 29 6 8.3985 -2.2395 0.6981 30 1 7.8097 -1.8324 1.5200 31 6 8.1998 -1.4136 -0.5579 32 1 -0.5400 -0.9353 -0.0046 33 1 -0.5400 0.9353 0.0045 34 1 1.8500 -0.9353 -0.0045 35 1 2.6174 1.4048 -0.9335 36 1 1.3590 2.1315 0.0945 37 1 1.9031 2.5025 2.5867 38 1 3.9965 2.1245 4.1136 39 1 5.7615 0.6553 2.7399 40 1 6.4257 -0.6822 1.1608 41 1 5.0156 -2.6890 -1.0747 42 1 6.5018 -3.2292 -1.8799 43 1 6.0490 -4.6595 0.0598 44 1 5.9874 -3.2249 1.1213 45 1 7.8188 -4.5418 2.3331 46 1 8.7983 -5.4879 1.1754 47 1 9.2207 -6.9093 3.7840 48 1 10.4793 -2.6627 0.2534 49 1 10.2223 -1.6801 1.7312 50 1 8.7154 -1.8820 -1.3962 51 1 8.5810 -0.4040 -0.4045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979789464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:53 Heat of formation + Delta-G solvation = 58.337277 kcal Electronic energy + Delta-G solvation = -30703.859968 eV Core-core repulsion = 26797.998934 eV Total energy + Delta-G solvation = -3905.861034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.56190 -40.07828 -38.37379 -35.73937 -35.36567 -33.27814 -31.90510 -31.52135 -30.81740 -29.47331 -28.48635 -26.28267 -26.25800 -25.04295 -23.06130 -21.95982 -21.03257 -20.60321 -20.42195 -19.82571 -19.58663 -18.83402 -18.09229 -16.70552 -16.13011 -15.80150 -15.70671 -15.17478 -14.90401 -14.62079 -14.32799 -14.06936 -14.05263 -13.73292 -13.54447 -13.26970 -13.15040 -12.82963 -12.76160 -12.46693 -12.21173 -12.16652 -12.08716 -11.93095 -11.55053 -11.41659 -11.16697 -11.00870 -10.80040 -10.77152 -10.61820 -10.05572 -9.98433 -9.87212 -9.82494 -9.79339 -9.47493 -9.35492 -8.94464 -8.89543 -8.57986 -8.31833 -6.79405 -5.66982 -2.99866 1.38202 1.74009 2.63288 2.65844 3.37679 3.39238 3.41845 3.47279 3.49747 4.38842 4.51614 4.54586 4.68608 4.82770 4.87665 4.94274 4.96556 5.06918 5.21367 5.26355 5.33286 5.35180 5.38327 5.54668 5.55669 5.66276 5.70039 5.77225 5.86116 5.94671 6.00307 6.04187 6.16988 6.18229 6.21388 6.27313 6.28529 6.30193 6.39704 6.51018 6.60217 6.63540 6.66890 6.69612 6.85482 6.86888 7.02500 7.06506 7.55187 7.59497 7.68738 7.87097 8.21282 8.26574 9.24137 9.84899 10.52835 11.44902 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.002639 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.758347 B =10609.477424 C =11170.764015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.130 3.870 4 N -0.407 5.407 5 C 0.013 3.987 6 C -0.206 4.206 7 C -0.139 4.139 8 C -0.050 4.050 9 C 0.588 3.412 10 O -0.554 6.554 11 N -0.708 5.708 12 C 0.155 3.845 13 H 0.082 0.918 14 C -0.125 4.125 15 C -0.098 4.098 16 C -0.115 4.115 17 H 0.063 0.937 18 C 0.189 3.811 19 N -0.609 5.609 20 C -0.224 4.224 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.143 3.857 29 C -0.108 4.108 30 H 0.070 0.930 31 C -0.112 4.112 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.166 0.834 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.404 0.596 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.037 0.963 46 H 0.049 0.951 47 H 0.250 0.750 48 H 0.021 0.979 49 H 0.038 0.962 50 H 0.080 0.920 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.288 15.954 -7.241 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.179 4.179 3 C 0.010 3.990 4 N -0.080 5.080 5 C -0.122 4.122 6 C -0.230 4.230 7 C -0.165 4.165 8 C -0.163 4.163 9 C 0.376 3.624 10 O -0.434 6.434 11 N -0.360 5.360 12 C 0.051 3.949 13 H 0.100 0.900 14 C -0.164 4.164 15 C -0.136 4.136 16 C -0.135 4.135 17 H 0.081 0.919 18 C 0.065 3.935 19 N -0.336 5.336 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.740 3.260 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.017 3.983 29 C -0.128 4.128 30 H 0.089 0.911 31 C -0.150 4.150 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.183 0.817 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.241 0.759 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.039 0.961 49 H 0.057 0.943 50 H 0.098 0.902 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.836 15.710 -8.203 23.767 hybrid contribution 0.722 -0.436 1.270 1.524 sum -15.115 15.274 -6.933 22.579 Atomic orbital electron populations 1.23882 0.95485 1.02263 0.99891 1.23101 0.95964 0.98548 1.00252 1.21105 0.91638 0.96652 0.89645 1.43945 1.13054 1.38465 1.12487 1.21986 1.01432 1.03113 0.85637 1.20829 0.94938 1.06471 1.00788 1.21428 1.00476 1.02021 0.92577 1.20120 0.89425 1.08787 0.97969 1.16985 0.80965 0.78384 0.86078 1.90768 1.62517 1.63765 1.26399 1.45918 1.21977 1.53895 1.14187 1.21053 0.91788 0.92785 0.89250 0.89995 1.21743 1.00817 0.94642 0.99197 1.21027 0.96045 0.99003 0.97557 1.22149 0.94535 0.96144 1.00635 0.91903 1.20788 0.87544 0.93439 0.91778 1.45102 1.26980 1.20119 1.41414 1.19107 1.02815 1.03444 1.09897 0.90500 1.24783 0.98244 0.97508 1.00112 1.69976 1.28549 1.14570 1.43847 0.86073 0.80127 0.78262 0.81489 1.20575 1.21842 1.21855 1.21284 0.92839 0.90049 0.94129 1.22059 0.98791 0.95936 0.95966 0.91135 1.21662 0.93537 1.00671 0.99163 0.87808 0.88407 0.86580 0.87011 0.89053 0.81692 0.84012 0.83777 0.75924 0.91861 0.91454 0.92009 0.92227 0.94444 0.93283 0.93925 0.96148 0.94336 0.90159 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 14.32 29.01 0.42 -0.93 16 2 C -0.16 -1.56 9.64 -36.03 -0.35 -1.91 16 3 C 0.13 1.22 5.83 -5.20 -0.03 1.19 16 4 N -0.41 -4.46 2.75 -114.16 -0.31 -4.77 16 5 C 0.01 0.12 11.36 -16.91 -0.19 -0.07 16 6 C -0.21 -2.11 10.81 -39.98 -0.43 -2.54 16 7 C -0.14 -1.60 10.35 -39.12 -0.40 -2.01 16 8 C -0.05 -0.63 6.87 -81.98 -0.56 -1.19 16 9 C 0.59 8.03 7.67 -12.85 -0.10 7.93 16 10 O -0.55 -8.59 14.14 5.19 0.07 -8.51 16 11 N -0.71 -8.90 4.62 -54.94 -0.25 -9.16 16 12 C 0.16 1.96 2.66 -67.76 -0.18 1.78 16 13 H 0.08 1.05 7.63 -51.93 -0.40 0.66 16 14 C -0.13 -1.68 5.37 -27.06 -0.15 -1.83 16 15 C -0.10 -1.52 5.54 -27.62 -0.15 -1.68 16 16 C -0.12 -2.06 2.30 -90.36 -0.21 -2.27 16 17 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 18 C 0.19 4.50 5.08 -3.43 -0.02 4.49 16 19 N -0.61 -15.36 3.45 -170.42 -0.59 -15.94 16 20 C -0.22 -6.23 10.30 -15.06 -0.16 -6.39 16 21 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -27.14 10.36 55.49 0.58 -26.56 16 24 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 C 0.14 2.83 6.90 -2.82 -0.02 2.81 16 29 C -0.11 -1.74 2.42 -89.89 -0.22 -1.96 16 30 H 0.07 1.15 6.23 -51.93 -0.32 0.83 16 31 C -0.11 -1.42 5.37 -27.01 -0.15 -1.56 16 32 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.10 0.56 7.84 -52.49 -0.41 0.15 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.20 6.77 -51.93 -0.35 0.85 16 36 H 0.09 0.59 7.76 -51.93 -0.40 0.19 16 37 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.14 1.49 7.49 -52.48 -0.39 1.10 16 40 H 0.40 4.86 5.76 -40.82 -0.24 4.63 16 41 H 0.06 0.90 7.83 -51.93 -0.41 0.49 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 45 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 46 H 0.05 1.32 7.30 -51.93 -0.38 0.94 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 0.99 7.98 -51.93 -0.41 0.57 16 51 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -32.26 399.56 -10.78 -43.04 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.28 Total: 5.25 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.99 Total: -6.52 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.58 Total: -56.44 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.26 -10.78 -43.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979789464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.375 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds