Wall clock time and date at job start Wed Apr 1 2020 03:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.99626 * 2 1 4 4 C 1.54325 * 109.87809 * 238.90541 * 2 1 3 5 5 H 1.09000 * 110.71845 * 336.92942 * 4 2 1 6 6 N 1.46499 * 110.72025 * 100.02739 * 4 2 1 7 7 C 1.36934 * 119.99863 * 202.55461 * 6 4 2 8 8 H 1.07995 * 120.00545 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99910 * 179.97438 * 7 6 4 10 10 N 1.31614 * 120.00213 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99898 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46829 * 269.99483 * 11 9 7 13 13 H 1.48500 * 109.46930 * 29.99387 * 11 9 7 14 14 H 1.48501 * 109.47257 * 149.99563 * 11 9 7 15 15 C 1.55154 * 103.10068 * 218.48175 * 4 2 1 16 16 C 1.54905 * 101.58406 * 35.41168 * 15 4 2 17 17 N 1.47320 * 110.06106 * 121.17647 * 2 1 3 18 18 C 1.34777 * 125.61366 * 298.31169 * 17 2 1 19 19 O 1.21550 * 120.00163 * 353.78973 * 18 17 2 20 20 C 1.47859 * 119.99679 * 173.78916 * 18 17 2 21 21 C 1.39615 * 120.11101 * 335.35138 * 20 18 17 22 22 C 1.37984 * 120.00258 * 179.76188 * 21 20 18 23 23 C 1.38255 * 120.22987 * 0.51761 * 22 21 20 24 24 C 1.38976 * 120.21517 * 359.73626 * 23 22 21 25 25 N 1.39716 * 120.00236 * 180.02562 * 24 23 22 26 26 C 1.48540 * 110.99478 * 306.87033 * 25 24 23 27 27 C 1.54940 * 103.22333 * 159.72228 * 26 25 24 28 28 C 1.54601 * 102.92152 * 322.58388 * 27 26 25 29 29 C 1.47899 * 110.99902 * 64.26474 * 25 24 23 30 30 C 1.38683 * 119.99696 * 0.02562 * 24 23 22 31 31 H 1.08999 * 109.47293 * 181.09625 * 1 2 3 32 32 H 1.09004 * 109.46574 * 301.09396 * 1 2 3 33 33 H 1.09003 * 109.47286 * 61.09019 * 1 2 3 34 34 H 0.97006 * 119.99891 * 22.55508 * 6 4 2 35 35 H 0.97006 * 120.00262 * 180.02562 * 10 9 7 36 36 H 1.08998 * 111.00664 * 153.49086 * 15 4 2 37 37 H 1.09005 * 111.00151 * 277.30077 * 15 4 2 38 38 H 1.09003 * 110.36605 * 81.83362 * 16 15 4 39 39 H 1.08999 * 110.36919 * 204.15325 * 16 15 4 40 40 H 1.07993 * 119.99964 * 0.02658 * 21 20 18 41 41 H 1.08000 * 119.88246 * 180.25247 * 22 21 20 42 42 H 1.07990 * 119.89123 * 179.75991 * 23 22 21 43 43 H 1.09002 * 110.67028 * 278.15344 * 26 25 24 44 44 H 1.08999 * 110.66735 * 41.29071 * 26 25 24 45 45 H 1.09004 * 110.72438 * 204.23034 * 27 26 25 46 46 H 1.09000 * 110.87800 * 81.01678 * 27 26 25 47 47 H 1.08995 * 110.31015 * 263.04698 * 28 27 26 48 48 H 1.08999 * 110.30359 * 140.87341 * 28 27 26 49 49 H 1.08993 * 109.91964 * 333.51055 * 29 25 24 50 50 H 1.09002 * 109.91216 * 94.80665 * 29 25 24 51 51 H 1.07991 * 120.11240 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3038 -1.4436 -1.6201 6 7 2.4554 0.1961 -2.2876 7 6 2.5062 -0.2090 -3.5946 8 1 2.2506 -1.2253 -3.8554 9 6 2.8853 0.6872 -4.5847 10 7 2.9337 0.2981 -5.8411 11 14 3.3268 2.4454 -4.1338 12 1 2.1065 3.2903 -4.1833 13 1 3.8953 2.4768 -2.7623 14 1 4.3293 2.9667 -5.0973 15 6 3.2868 -1.5178 -0.6959 16 6 2.8161 -1.8832 0.7339 17 7 2.0354 -0.7164 1.1840 18 6 1.8165 -0.3650 2.4666 19 8 1.2486 0.6789 2.7223 20 6 2.2671 -1.2493 3.5625 21 6 2.4361 -2.6164 3.3349 22 6 2.8614 -3.4388 4.3580 23 6 3.1114 -2.9159 5.6132 24 6 2.9411 -1.5574 5.8515 25 7 3.1955 -1.0336 7.1216 26 6 2.4415 -1.7759 8.1642 27 6 3.2148 -1.4435 9.4650 28 6 4.6880 -1.4248 8.9963 29 6 4.6238 -1.1771 7.4777 30 6 2.5187 -0.7216 4.8286 31 1 -0.3634 -1.0275 0.0197 32 1 -0.3632 0.5308 0.8801 33 1 -0.3634 0.4968 -0.8996 34 1 2.6846 1.1091 -2.0534 35 1 3.1990 0.9242 -6.5329 36 1 3.4809 -2.4145 -1.2844 37 1 4.1665 -0.8748 -0.6659 38 1 2.1879 -2.7737 0.7106 39 1 3.6742 -2.0403 1.3874 40 1 2.2381 -3.0295 2.3570 41 1 2.9955 -4.4953 4.1787 42 1 3.4403 -3.5652 6.4109 43 1 1.4141 -1.4169 8.2250 44 1 2.4647 -2.8475 7.9660 45 1 3.0586 -2.2185 10.2154 46 1 2.9211 -0.4682 9.8530 47 1 5.1630 -2.3837 9.2034 48 1 5.2313 -0.6183 9.4886 49 1 5.0561 -2.0239 6.9448 50 1 5.1624 -0.2632 7.2275 51 1 2.3854 0.3343 5.0119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987257681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:54 Heat of formation + Delta-G solvation = 31.373026 kcal Electronic energy + Delta-G solvation = -29933.130181 eV Core-core repulsion = 26026.099889 eV Total energy + Delta-G solvation = -3907.030292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.85444 -39.94845 -38.04479 -37.24577 -34.37859 -33.11835 -31.88710 -31.29709 -30.94522 -29.64456 -29.32744 -28.59414 -25.49431 -24.57841 -23.23561 -22.66920 -22.24213 -21.35614 -21.13126 -20.29090 -19.24035 -17.65641 -17.58988 -16.72397 -16.54173 -16.31667 -15.83360 -15.33876 -14.86699 -14.67575 -14.42736 -14.13983 -14.04998 -13.86005 -13.49230 -13.46121 -13.25004 -12.92589 -12.78512 -12.64554 -12.41573 -12.26714 -12.11673 -11.99986 -11.86556 -11.79404 -11.61567 -11.49137 -11.30641 -11.21555 -11.03010 -10.86597 -10.63768 -10.38652 -10.08647 -9.80415 -9.64426 -9.22675 -9.05641 -8.98714 -8.88816 -8.51577 -7.36283 -5.83726 -3.21044 0.63681 1.05158 2.73873 2.95539 3.35564 3.39284 3.43735 3.50710 3.58244 4.18382 4.34468 4.37542 4.49806 4.54056 4.59032 4.71532 4.78401 4.84447 4.95986 5.02928 5.04596 5.11211 5.16491 5.25107 5.31645 5.33770 5.37311 5.38013 5.46269 5.52550 5.55223 5.57741 5.63950 5.68704 5.72354 5.78008 5.84676 5.96531 6.01873 6.09964 6.12711 6.17066 6.30852 6.32650 6.36523 6.47922 6.49910 6.60605 6.77537 7.02809 7.61867 7.90026 8.21887 8.34619 9.11306 9.84039 10.02292 11.33852 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.002174 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.598839 B =12878.450459 C =13034.877900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.124 3.876 3 H 0.076 0.924 4 C 0.181 3.819 5 H 0.076 0.924 6 N -0.739 5.739 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.277 1.277 14 H -0.290 1.290 15 C -0.156 4.156 16 C 0.094 3.906 17 N -0.604 5.604 18 C 0.571 3.429 19 O -0.536 6.536 20 C -0.117 4.117 21 C -0.098 4.098 22 C -0.118 4.118 23 C -0.131 4.131 24 C 0.070 3.930 25 N -0.482 5.482 26 C 0.036 3.964 27 C -0.124 4.124 28 C -0.132 4.132 29 C 0.038 3.962 30 C -0.038 4.038 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.142 0.858 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.051 0.949 50 H 0.083 0.917 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -9.584 29.595 31.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 H 0.094 0.906 4 C 0.070 3.930 5 H 0.094 0.906 6 N -0.380 5.380 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.203 1.203 14 H -0.217 1.217 15 C -0.197 4.197 16 C -0.029 4.029 17 N -0.337 5.337 18 C 0.360 3.640 19 O -0.414 6.414 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.136 4.136 23 C -0.151 4.151 24 C -0.024 4.024 25 N -0.204 5.204 26 C -0.090 4.090 27 C -0.162 4.162 28 C -0.170 4.170 29 C -0.088 4.088 30 C -0.058 4.058 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.197 0.803 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.160 0.840 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.069 0.931 50 H 0.101 0.899 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.180 -8.548 29.530 30.765 hybrid contribution 0.719 0.303 0.159 0.796 sum 1.899 -8.245 29.689 30.871 Atomic orbital electron populations 1.22050 0.94497 1.01976 1.02795 1.22011 0.94638 0.96854 0.84404 0.90584 1.21223 0.93924 0.91326 0.86525 0.90628 1.42705 1.81765 1.09707 1.03860 1.19013 1.39446 0.98173 0.81114 0.88983 1.24662 1.01256 0.97723 0.95113 1.69692 1.53828 1.34941 0.99215 0.86594 0.78332 0.86367 0.77499 1.20901 1.20266 1.21653 1.23574 1.01073 1.02080 0.92998 1.22679 0.94739 0.88241 0.97210 1.48503 1.51899 1.28609 1.04735 1.17893 0.79519 0.85306 0.81299 1.90771 1.43171 1.24291 1.83212 1.19884 1.03868 0.94040 0.94241 1.21912 0.96760 0.92633 1.00348 1.20981 1.00103 1.00004 0.92533 1.21765 1.00084 0.95550 0.97675 1.18832 1.01119 0.91296 0.91185 1.62387 1.06301 1.52109 0.99591 1.23385 0.98749 0.96527 0.90347 1.22495 0.94504 1.02547 0.96649 1.22423 0.97341 1.02218 0.94998 1.22997 0.88496 1.01759 0.95562 1.21062 0.94220 1.00712 0.89780 0.92705 0.92083 0.90869 0.80340 0.92937 0.89942 0.90641 0.91212 0.90690 0.84039 0.85355 0.86031 0.89584 0.93026 0.90811 0.90441 0.91340 0.90680 0.93108 0.89875 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.11 37.16 0.34 -2.11 16 2 C 0.12 2.09 3.19 -66.79 -0.21 1.88 16 3 H 0.08 1.42 7.70 -51.93 -0.40 1.02 16 4 C 0.18 3.26 3.12 -66.10 -0.21 3.06 16 5 H 0.08 1.37 7.81 -51.93 -0.41 0.96 16 6 N -0.74 -16.67 5.04 -51.65 -0.26 -16.93 16 7 C -0.25 -6.66 10.45 -15.06 -0.16 -6.82 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 10 N -0.93 -28.44 13.97 55.49 0.78 -27.67 16 11 Si 0.88 21.80 27.74 -169.99 -4.71 17.09 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 C -0.16 -2.39 6.77 -24.59 -0.17 -2.56 16 16 C 0.09 1.16 4.99 -2.53 -0.01 1.15 16 17 N -0.60 -9.03 3.08 -163.89 -0.50 -9.54 16 18 C 0.57 9.00 7.40 -12.32 -0.09 8.91 16 19 O -0.54 -10.19 15.91 5.32 0.08 -10.11 16 20 C -0.12 -1.50 5.66 -104.99 -0.59 -2.09 16 21 C -0.10 -1.00 8.08 -39.16 -0.32 -1.32 16 22 C -0.12 -1.00 10.02 -39.67 -0.40 -1.40 16 23 C -0.13 -1.14 7.97 -39.30 -0.31 -1.45 16 24 C 0.07 0.73 4.82 -83.83 -0.40 0.32 16 25 N -0.48 -4.52 5.27 -167.20 -0.88 -5.40 16 26 C 0.04 0.27 6.39 -1.89 -0.01 0.25 16 27 C -0.12 -0.70 7.06 -24.87 -0.18 -0.87 16 28 C -0.13 -0.74 6.93 -25.37 -0.18 -0.92 16 29 C 0.04 0.29 6.54 -2.75 -0.02 0.27 16 30 C -0.04 -0.48 9.51 -38.96 -0.37 -0.85 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.00 7.14 -51.93 -0.37 0.63 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.36 8.28 5.40 -40.82 -0.22 8.06 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 0.71 6.81 -51.93 -0.35 0.36 16 39 H 0.07 0.82 6.86 -51.93 -0.36 0.46 16 40 H 0.14 1.28 4.61 -52.49 -0.24 1.04 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.84 6.99 -52.49 -0.37 0.47 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.35 6.37 -51.93 -0.33 0.02 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.05 0.38 6.98 -51.93 -0.36 0.02 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.14 1.89 7.84 -52.49 -0.41 1.48 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -32.26 395.61 -10.98 -43.24 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.06 Total: 7.74 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -3.38 Total: -4.39 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.87 Total: -59.53 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.26 -10.98 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987257681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.612 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds