Wall clock time and date at job start Wed Apr 1 2020 03:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.41178 * 2 1 4 4 C 1.55124 * 110.34044 * 122.44776 * 2 1 3 5 5 C 1.55158 * 101.48462 * 156.06243 * 4 2 1 6 6 H 1.08998 * 110.72343 * 82.68987 * 5 4 2 7 7 N 1.46496 * 110.72086 * 205.97102 * 5 4 2 8 8 C 1.36936 * 120.00109 * 199.97324 * 7 5 4 9 9 H 1.07991 * 120.00091 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00139 * 179.97438 * 8 7 5 11 11 N 1.31624 * 120.00091 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00142 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46927 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47067 * 120.00074 * 12 10 8 15 15 H 1.48497 * 109.46983 * 239.99708 * 12 10 8 16 16 C 1.54325 * 102.93907 * 324.32914 * 5 4 2 17 17 N 1.47018 * 107.27332 * 22.19390 * 16 5 4 18 18 C 1.34774 * 125.65214 * 181.01943 * 17 16 5 19 19 O 1.21628 * 120.00486 * 180.02562 * 18 17 16 20 20 C 1.47266 * 119.99735 * 0.02788 * 18 17 16 21 21 C 1.46680 * 126.94278 * 0.02562 * 20 18 17 22 22 C 1.34485 * 106.33156 * 179.73769 * 21 20 18 23 23 C 1.50700 * 125.57281 * 180.24286 * 22 21 20 24 24 C 1.52997 * 117.50154 * 33.64357 * 23 22 21 25 25 C 1.52995 * 60.00392 * 252.51253 * 24 23 22 26 26 N 1.36446 * 108.85999 * 0.24050 * 22 21 20 27 27 H 0.96998 * 124.85436 * 179.97438 * 26 22 21 28 28 C 1.34665 * 110.29435 * 359.97438 * 26 22 21 29 29 C 1.50696 * 125.79840 * 179.97438 * 28 26 22 30 30 C 1.52997 * 117.50185 * 8.65406 * 29 28 26 31 31 C 1.52998 * 117.50440 * 300.02785 * 29 28 26 32 32 H 1.09002 * 109.47202 * 180.83785 * 1 2 3 33 33 H 1.09005 * 109.47239 * 300.83935 * 1 2 3 34 34 H 1.08998 * 109.47014 * 60.83780 * 1 2 3 35 35 H 1.08995 * 111.19707 * 37.95246 * 4 2 1 36 36 H 1.09010 * 110.93899 * 274.04730 * 4 2 1 37 37 H 0.97005 * 120.00173 * 19.97133 * 7 5 4 38 38 H 0.96997 * 120.00007 * 180.02562 * 11 10 8 39 39 H 1.09009 * 109.88433 * 262.77641 * 16 5 4 40 40 H 1.08996 * 109.88351 * 141.61323 * 16 5 4 41 41 H 1.08002 * 126.83670 * 0.02562 * 21 20 18 42 42 H 1.08997 * 115.55424 * 179.35817 * 23 22 21 43 43 H 1.08999 * 117.49626 * 0.02562 * 24 23 22 44 44 H 1.08996 * 117.50046 * 145.01917 * 24 23 22 45 45 H 1.08998 * 117.49951 * 252.51083 * 25 24 23 46 46 H 1.08999 * 117.51777 * 107.47637 * 25 24 23 47 47 H 1.09002 * 115.54996 * 154.35456 * 29 28 26 48 48 H 1.08998 * 117.50013 * 359.97438 * 30 29 28 49 49 H 1.09001 * 117.50501 * 145.01813 * 30 29 28 50 50 H 1.09000 * 117.49954 * 214.98136 * 31 29 28 51 51 H 1.08998 * 117.49872 * 0.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7804 1.2274 5 6 3.4797 -1.1972 0.7332 6 1 4.1930 -0.3849 0.8728 7 7 3.9320 -2.4098 1.4196 8 6 5.2652 -2.7207 1.4533 9 1 5.9832 -2.0722 0.9735 10 6 5.6939 -3.8694 2.1041 11 7 4.8189 -4.6596 2.6894 12 14 7.5125 -4.2938 2.1494 13 1 8.2820 -3.2524 1.4225 14 1 7.9716 -4.3548 3.5604 15 1 7.7294 -5.6120 1.5010 16 6 3.2524 -1.4724 -0.7682 17 7 2.0431 -0.7384 -1.1683 18 6 1.4972 -0.7361 -2.4006 19 8 0.4908 -0.0888 -2.6188 20 6 2.1192 -1.5174 -3.4829 21 6 3.3254 -2.3469 -3.3903 22 6 3.5170 -2.8734 -4.6129 23 6 4.6382 -3.8024 -5.0015 24 6 5.1423 -4.7835 -3.9413 25 6 6.0002 -3.5812 -4.3404 26 7 2.5304 -2.4290 -5.4441 27 1 2.4463 -2.6659 -6.3809 28 6 1.6902 -1.6143 -4.7779 29 6 0.4803 -0.9296 -5.3594 30 6 0.0528 -1.3303 -6.7728 31 6 0.7059 0.0316 -6.5282 32 1 -0.3634 -1.0276 0.0150 33 1 -0.3634 0.5268 0.8824 34 1 -0.3633 0.5008 -0.8974 35 1 1.4549 -1.6555 1.4390 36 1 2.1373 -0.1328 2.1017 37 1 3.2871 -2.9926 1.8503 38 1 5.1185 -5.4621 3.1445 39 1 3.1089 -2.5405 -0.9318 40 1 4.1080 -1.1188 -1.3435 41 1 3.9354 -2.5072 -2.5136 42 1 4.6308 -4.1406 -6.0377 43 1 4.6627 -4.7574 -2.9629 44 1 5.4664 -5.7676 -4.2798 45 1 6.8887 -3.7742 -4.9415 46 1 6.0853 -2.7635 -3.6247 47 1 -0.3063 -0.6800 -4.6473 48 1 0.6471 -2.0888 -7.2822 49 1 -1.0151 -1.3445 -6.9907 50 1 0.0676 0.9133 -6.5852 51 1 1.7295 0.1684 -6.8769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989040195.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:17 Heat of formation + Delta-G solvation = 80.693960 kcal Electronic energy + Delta-G solvation = -30923.967003 eV Core-core repulsion = 27019.075428 eV Total energy + Delta-G solvation = -3904.891576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.50563 -39.46405 -37.62831 -36.93065 -36.38376 -34.08323 -32.16977 -31.33705 -30.16917 -28.98514 -28.32273 -25.40484 -24.18025 -23.82086 -23.20239 -22.64264 -22.33406 -21.38553 -20.52258 -20.10753 -19.66305 -18.03745 -17.44245 -17.10938 -16.14309 -15.85708 -15.58404 -15.12033 -14.81867 -14.62601 -14.37129 -14.10472 -13.71666 -13.63010 -13.51273 -13.27417 -12.96986 -12.68685 -12.58252 -11.98386 -11.92817 -11.83582 -11.79570 -11.65362 -11.51844 -11.47884 -11.16656 -11.13691 -10.94699 -10.62435 -10.61464 -10.55055 -10.51369 -10.46033 -10.24922 -9.96844 -9.72335 -9.22592 -8.93607 -8.69951 -8.16816 -7.74642 -7.05439 -5.82647 -3.13033 1.80363 2.39440 2.99622 3.39720 3.45675 3.48051 3.51619 3.62999 3.92463 4.02957 4.36833 4.53575 4.57959 4.64657 4.80926 4.84908 4.92817 5.00883 5.01532 5.11318 5.22490 5.34026 5.35096 5.47964 5.57032 5.60925 5.62699 5.65926 5.66485 5.68874 5.79270 5.81013 5.92213 5.94014 5.98209 6.01949 6.09385 6.19261 6.21630 6.22972 6.30892 6.36916 6.53827 6.60579 6.61705 6.82758 6.90669 6.98237 7.09295 7.44108 7.66049 8.07430 8.34845 8.71543 9.46913 10.01907 10.37020 11.39440 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009717 B = 0.004000 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.713524 B = 6997.911125 C = 9483.779585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.070 0.930 4 C -0.136 4.136 5 C 0.169 3.831 6 H 0.064 0.936 7 N -0.713 5.713 8 C -0.245 4.245 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.905 3.095 13 H -0.279 1.279 14 H -0.292 1.292 15 H -0.291 1.291 16 C 0.076 3.924 17 N -0.603 5.603 18 C 0.605 3.395 19 O -0.561 6.561 20 C -0.213 4.213 21 C -0.162 4.162 22 C 0.044 3.956 23 C -0.099 4.099 24 C -0.162 4.162 25 C -0.164 4.164 26 N -0.548 5.548 27 H 0.409 0.591 28 C 0.129 3.871 29 C -0.082 4.082 30 C -0.186 4.186 31 C -0.166 4.166 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.387 0.613 38 H 0.255 0.745 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.161 0.839 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.144 0.856 48 H 0.086 0.914 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 5.592 -17.878 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.175 4.175 5 C 0.057 3.943 6 H 0.082 0.918 7 N -0.354 5.354 8 C -0.376 4.376 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.577 5.577 12 Si 0.736 3.264 13 H -0.204 1.204 14 H -0.219 1.219 15 H -0.218 1.218 16 C -0.050 4.050 17 N -0.336 5.336 18 C 0.397 3.603 19 O -0.443 6.443 20 C -0.223 4.223 21 C -0.186 4.186 22 C -0.064 4.064 23 C -0.118 4.118 24 C -0.200 4.200 25 C -0.201 4.201 26 N -0.143 5.143 27 H 0.245 0.755 28 C 0.011 3.989 29 C -0.100 4.100 30 C -0.223 4.223 31 C -0.204 4.204 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.221 0.779 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.178 0.822 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.162 0.838 48 H 0.105 0.895 49 H 0.121 0.879 50 H 0.121 0.879 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.924 5.848 -18.142 19.961 hybrid contribution 0.965 -0.831 -0.307 1.310 sum -4.959 5.017 -18.449 19.752 Atomic orbital electron populations 1.22156 0.94423 1.02418 1.02936 1.21857 0.94723 0.95152 0.84743 0.91184 1.23174 0.97758 1.00271 0.96307 1.21230 0.93120 0.90979 0.88987 0.91839 1.42381 1.05939 1.23809 1.63236 1.19283 0.83910 1.05195 1.29193 0.90947 1.24745 0.97560 0.97632 1.00547 1.69672 1.32426 1.15249 1.40313 0.86160 0.85005 0.77982 0.77292 1.20441 1.21877 1.21808 1.23487 0.85384 0.96746 0.99377 1.48315 1.28442 1.48283 1.08548 1.16946 0.82689 0.80086 0.80573 1.90610 1.25836 1.45512 1.82322 1.20011 1.00828 1.08383 0.93046 1.22478 0.98426 1.00518 0.97134 1.19297 0.93203 1.03215 0.90701 1.20258 0.92744 1.00718 0.98069 1.23121 1.02878 0.94322 0.99635 1.23079 0.92681 1.01185 1.03194 1.41288 1.22366 1.38724 1.11921 0.75486 1.19139 0.92899 0.95630 0.91185 1.20812 0.96388 1.01603 0.91229 1.23010 1.01787 0.98558 0.98930 1.23003 1.01991 0.93866 1.01526 0.92889 0.92639 0.89716 0.90543 0.90358 0.77877 0.93461 0.90563 0.92287 0.82165 0.87633 0.87457 0.88413 0.88497 0.87866 0.83814 0.89539 0.87899 0.87927 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 8.71 37.16 0.32 -2.09 16 2 C 0.14 2.18 3.78 -66.30 -0.25 1.93 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -2.23 6.12 -24.47 -0.15 -2.38 16 5 C 0.17 3.20 3.59 -66.10 -0.24 2.97 16 6 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 7 N -0.71 -16.82 5.18 -51.66 -0.27 -17.09 16 8 C -0.24 -6.38 9.98 -15.06 -0.15 -6.53 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 11 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 12 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 C 0.08 1.36 4.74 -3.07 -0.01 1.34 16 17 N -0.60 -10.36 3.24 -164.23 -0.53 -10.89 16 18 C 0.61 10.78 7.62 -12.59 -0.10 10.68 16 19 O -0.56 -10.48 12.53 5.25 0.07 -10.41 16 20 C -0.21 -3.47 6.23 -103.35 -0.64 -4.11 16 21 C -0.16 -2.50 8.29 -37.50 -0.31 -2.81 16 22 C 0.04 0.58 6.83 -81.87 -0.56 0.02 16 23 C -0.10 -1.08 6.33 -91.77 -0.58 -1.66 16 24 C -0.16 -1.90 10.03 -26.74 -0.27 -2.16 16 25 C -0.16 -1.81 10.04 -26.73 -0.27 -2.08 16 26 N -0.55 -6.30 5.80 -5.42 -0.03 -6.33 16 27 H 0.41 3.42 7.84 -40.82 -0.32 3.10 16 28 C 0.13 1.77 6.69 -81.88 -0.55 1.22 16 29 C -0.08 -0.97 5.62 -91.78 -0.52 -1.49 16 30 C -0.19 -1.59 10.13 -26.73 -0.27 -1.86 16 31 C -0.17 -1.57 10.23 -26.73 -0.27 -1.85 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.38 5.88 -51.93 -0.31 1.07 16 35 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 36 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.39 9.83 7.71 -40.82 -0.31 9.51 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.08 1.50 6.73 -51.92 -0.35 1.15 16 40 H 0.06 1.03 7.01 -51.93 -0.36 0.67 16 41 H 0.16 2.61 4.80 -52.49 -0.25 2.36 16 42 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.11 1.48 7.90 -51.93 -0.41 1.07 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 1.27 7.93 -51.93 -0.41 0.85 16 47 H 0.14 1.98 6.63 -51.93 -0.34 1.64 16 48 H 0.09 0.62 7.08 -51.93 -0.37 0.25 16 49 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -30.38 404.25 -11.93 -42.31 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -8.05 Total: 17.31 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -4.91 Total: -11.18 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.11 Total: -60.54 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.38 -11.93 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989040195.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.001 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds