Wall clock time and date at job start Wed Apr 1 2020 03:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.41178 * 2 1 4 4 C 1.55124 * 110.34044 * 122.44776 * 2 1 3 5 5 C 1.55158 * 101.48462 * 156.06243 * 4 2 1 6 6 H 1.08998 * 110.72343 * 82.68987 * 5 4 2 7 7 N 1.46496 * 110.72086 * 205.97102 * 5 4 2 8 8 C 1.36936 * 120.00109 * 199.97324 * 7 5 4 9 9 H 1.07991 * 120.00091 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00139 * 179.97438 * 8 7 5 11 11 N 1.31624 * 120.00091 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00142 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46927 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47067 * 120.00074 * 12 10 8 15 15 H 1.48497 * 109.46983 * 239.99708 * 12 10 8 16 16 C 1.54325 * 102.93907 * 324.32914 * 5 4 2 17 17 N 1.47018 * 107.27332 * 22.19390 * 16 5 4 18 18 C 1.34774 * 125.65214 * 181.01943 * 17 16 5 19 19 O 1.21628 * 120.00486 * 180.02562 * 18 17 16 20 20 C 1.47266 * 119.99735 * 0.02788 * 18 17 16 21 21 C 1.46680 * 126.94278 * 0.02562 * 20 18 17 22 22 C 1.34485 * 106.33156 * 179.73769 * 21 20 18 23 23 C 1.50700 * 125.57281 * 180.24286 * 22 21 20 24 24 C 1.52997 * 117.50154 * 33.64357 * 23 22 21 25 25 C 1.52995 * 60.00392 * 252.51253 * 24 23 22 26 26 N 1.36446 * 108.85999 * 0.24050 * 22 21 20 27 27 H 0.96998 * 124.85436 * 179.97438 * 26 22 21 28 28 C 1.34665 * 110.29435 * 359.97438 * 26 22 21 29 29 C 1.50696 * 125.79840 * 179.97438 * 28 26 22 30 30 C 1.52997 * 117.50185 * 8.65406 * 29 28 26 31 31 C 1.52998 * 117.50440 * 300.02785 * 29 28 26 32 32 H 1.09002 * 109.47202 * 180.83785 * 1 2 3 33 33 H 1.09005 * 109.47239 * 300.83935 * 1 2 3 34 34 H 1.08998 * 109.47014 * 60.83780 * 1 2 3 35 35 H 1.08995 * 111.19707 * 37.95246 * 4 2 1 36 36 H 1.09010 * 110.93899 * 274.04730 * 4 2 1 37 37 H 0.97005 * 120.00173 * 19.97133 * 7 5 4 38 38 H 0.96997 * 120.00007 * 180.02562 * 11 10 8 39 39 H 1.09009 * 109.88433 * 262.77641 * 16 5 4 40 40 H 1.08996 * 109.88351 * 141.61323 * 16 5 4 41 41 H 1.08002 * 126.83670 * 0.02562 * 21 20 18 42 42 H 1.08997 * 115.55424 * 179.35817 * 23 22 21 43 43 H 1.08999 * 117.49626 * 0.02562 * 24 23 22 44 44 H 1.08996 * 117.50046 * 145.01917 * 24 23 22 45 45 H 1.08998 * 117.49951 * 252.51083 * 25 24 23 46 46 H 1.08999 * 117.51777 * 107.47637 * 25 24 23 47 47 H 1.09002 * 115.54996 * 154.35456 * 29 28 26 48 48 H 1.08998 * 117.50013 * 359.97438 * 30 29 28 49 49 H 1.09001 * 117.50501 * 145.01813 * 30 29 28 50 50 H 1.09000 * 117.49954 * 214.98136 * 31 29 28 51 51 H 1.08998 * 117.49872 * 0.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7804 1.2274 5 6 3.4797 -1.1972 0.7332 6 1 4.1930 -0.3849 0.8728 7 7 3.9320 -2.4098 1.4196 8 6 5.2652 -2.7207 1.4533 9 1 5.9832 -2.0722 0.9735 10 6 5.6939 -3.8694 2.1041 11 7 4.8189 -4.6596 2.6894 12 14 7.5125 -4.2938 2.1494 13 1 8.2820 -3.2524 1.4225 14 1 7.9716 -4.3548 3.5604 15 1 7.7294 -5.6120 1.5010 16 6 3.2524 -1.4724 -0.7682 17 7 2.0431 -0.7384 -1.1683 18 6 1.4972 -0.7361 -2.4006 19 8 0.4908 -0.0888 -2.6188 20 6 2.1192 -1.5174 -3.4829 21 6 3.3254 -2.3469 -3.3903 22 6 3.5170 -2.8734 -4.6129 23 6 4.6382 -3.8024 -5.0015 24 6 5.1423 -4.7835 -3.9413 25 6 6.0002 -3.5812 -4.3404 26 7 2.5304 -2.4290 -5.4441 27 1 2.4463 -2.6659 -6.3809 28 6 1.6902 -1.6143 -4.7779 29 6 0.4803 -0.9296 -5.3594 30 6 0.0528 -1.3303 -6.7728 31 6 0.7059 0.0316 -6.5282 32 1 -0.3634 -1.0276 0.0150 33 1 -0.3634 0.5268 0.8824 34 1 -0.3633 0.5008 -0.8974 35 1 1.4549 -1.6555 1.4390 36 1 2.1373 -0.1328 2.1017 37 1 3.2871 -2.9926 1.8503 38 1 5.1185 -5.4621 3.1445 39 1 3.1089 -2.5405 -0.9318 40 1 4.1080 -1.1188 -1.3435 41 1 3.9354 -2.5072 -2.5136 42 1 4.6308 -4.1406 -6.0377 43 1 4.6627 -4.7574 -2.9629 44 1 5.4664 -5.7676 -4.2798 45 1 6.8887 -3.7742 -4.9415 46 1 6.0853 -2.7635 -3.6247 47 1 -0.3063 -0.6800 -4.6473 48 1 0.6471 -2.0888 -7.2822 49 1 -1.0151 -1.3445 -6.9907 50 1 0.0676 0.9133 -6.5852 51 1 1.7295 0.1684 -6.8769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989040195.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:16 Heat of formation + Delta-G solvation = 64.541887 kcal Electronic energy + Delta-G solvation = -30924.667410 eV Core-core repulsion = 27019.075428 eV Total energy + Delta-G solvation = -3905.591982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.58212 -40.83509 -38.68283 -38.20683 -37.25103 -35.89711 -33.46154 -33.16674 -31.36483 -30.07716 -29.98160 -26.78681 -25.92272 -24.85296 -24.58005 -23.34987 -23.23657 -22.48706 -22.02040 -21.30108 -20.78441 -19.35337 -19.11261 -18.39250 -17.52676 -16.98542 -16.68322 -16.46326 -16.11928 -15.91029 -15.43141 -15.39108 -15.28806 -14.97355 -14.78926 -14.71705 -14.28824 -14.15166 -13.79307 -13.30160 -13.26910 -13.11595 -12.88984 -12.83863 -12.71559 -12.64165 -12.49887 -12.41920 -12.21349 -12.08449 -12.03751 -11.99345 -11.70223 -11.52111 -11.39761 -11.37973 -11.31721 -10.97867 -10.48774 -9.85566 -9.54213 -9.03737 -8.82965 -7.91547 -5.21567 0.66998 1.26487 1.50975 1.51702 1.61305 1.95071 2.23917 2.48011 2.59609 2.98091 3.09387 3.40089 3.48634 3.52401 3.70492 3.84220 3.86604 3.92761 3.96430 4.04645 4.06005 4.10128 4.19603 4.23505 4.28167 4.34954 4.47547 4.53911 4.59259 4.66520 4.68593 4.77074 4.81362 4.82389 4.88854 4.90636 5.00942 5.01866 5.11005 5.13706 5.14806 5.18154 5.26639 5.30320 5.34823 5.35680 5.57109 5.61577 5.75281 5.96835 6.28830 6.53755 6.67817 7.34604 7.36747 8.07337 8.32532 9.31684 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009717 B = 0.004000 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.713524 B = 6997.911125 C = 9483.779585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 H 0.085 0.915 4 C -0.124 4.124 5 C 0.163 3.837 6 H 0.069 0.931 7 N -0.723 5.723 8 C -0.238 4.238 9 H 0.079 0.921 10 C -0.069 4.069 11 N -0.967 5.967 12 Si 0.967 3.033 13 H -0.264 1.264 14 H -0.297 1.297 15 H -0.295 1.295 16 C 0.098 3.902 17 N -0.607 5.607 18 C 0.598 3.402 19 O -0.576 6.576 20 C -0.256 4.256 21 C -0.187 4.187 22 C 0.052 3.948 23 C -0.090 4.090 24 C -0.174 4.174 25 C -0.162 4.162 26 N -0.529 5.529 27 H 0.428 0.572 28 C 0.144 3.856 29 C -0.115 4.115 30 C -0.159 4.159 31 C -0.157 4.157 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.083 0.917 47 H 0.119 0.881 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.110 0.890 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 6.218 -20.707 22.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.034 3.966 3 H 0.102 0.898 4 C -0.163 4.163 5 C 0.053 3.947 6 H 0.087 0.913 7 N -0.362 5.362 8 C -0.370 4.370 9 H 0.097 0.903 10 C -0.261 4.261 11 N -0.618 5.618 12 Si 0.796 3.204 13 H -0.188 1.188 14 H -0.224 1.224 15 H -0.222 1.222 16 C -0.029 4.029 17 N -0.340 5.340 18 C 0.391 3.609 19 O -0.459 6.459 20 C -0.266 4.266 21 C -0.211 4.211 22 C -0.057 4.057 23 C -0.109 4.109 24 C -0.211 4.211 25 C -0.200 4.200 26 N -0.126 5.126 27 H 0.268 0.732 28 C 0.025 3.975 29 C -0.134 4.134 30 C -0.196 4.196 31 C -0.195 4.195 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.208 0.792 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.093 0.907 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.101 0.899 47 H 0.137 0.863 48 H 0.125 0.875 49 H 0.135 0.865 50 H 0.128 0.872 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.447 6.517 -21.019 22.670 hybrid contribution 0.733 -0.955 0.509 1.307 sum -4.713 5.562 -20.509 21.767 Atomic orbital electron populations 1.22050 0.93603 1.01690 1.03554 1.21995 0.95370 0.95476 0.83749 0.89757 1.23084 0.95585 1.00245 0.97351 1.21404 0.94734 0.89373 0.89213 0.91293 1.42497 1.05048 1.24996 1.63681 1.19636 0.85071 1.04734 1.27528 0.90271 1.25487 1.01356 0.98025 1.01244 1.69824 1.34173 1.15775 1.42004 0.85172 0.80681 0.77705 0.76825 1.18790 1.22407 1.22184 1.23054 0.85917 0.95464 0.98418 1.48360 1.28198 1.48382 1.09050 1.17275 0.82601 0.80090 0.80957 1.90591 1.26377 1.46278 1.82613 1.20115 1.02174 1.10226 0.94097 1.22335 0.98779 1.02089 0.97881 1.19525 0.93625 1.02503 0.90069 1.20417 0.91586 0.99491 0.99374 1.23094 1.03616 0.95762 0.98637 1.23126 0.93763 1.00019 1.03067 1.41191 1.21235 1.37531 1.12626 0.73194 1.19345 0.92977 0.94660 0.90514 1.20700 0.95603 1.04571 0.92497 1.23162 1.03003 0.98199 0.95203 1.23087 1.02691 0.94613 0.99086 0.94293 0.89975 0.90980 0.91665 0.88335 0.79246 0.94104 0.92929 0.92221 0.84089 0.84183 0.90701 0.86342 0.85885 0.89855 0.86267 0.87540 0.86477 0.87162 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 8.71 71.98 0.63 -3.85 16 2 C 0.14 4.28 3.78 45.54 0.17 4.45 16 3 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 4 C -0.12 -4.06 6.12 32.06 0.20 -3.86 16 5 C 0.16 6.30 3.59 46.18 0.17 6.46 16 6 H 0.07 2.61 8.12 -2.39 -0.02 2.59 16 7 N -0.72 -35.06 5.18 -317.34 -1.64 -36.70 16 8 C -0.24 -12.59 9.98 84.03 0.84 -11.75 16 9 H 0.08 4.01 7.83 -2.92 -0.02 3.98 16 10 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 11 N -0.97 -57.76 13.06 21.65 0.28 -57.48 16 12 Si 0.97 44.69 29.55 68.60 2.03 46.72 16 13 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 14 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 16 C 0.10 3.64 4.74 86.73 0.41 4.05 16 17 N -0.61 -21.53 3.24 -791.75 -2.57 -24.10 16 18 C 0.60 22.06 7.62 86.62 0.66 22.72 16 19 O -0.58 -22.14 12.53 -4.12 -0.05 -22.19 16 20 C -0.26 -8.61 6.23 -19.04 -0.12 -8.73 16 21 C -0.19 -6.00 8.29 23.62 0.20 -5.81 16 22 C 0.05 1.32 6.83 40.98 0.28 1.60 16 23 C -0.09 -1.78 6.33 -11.54 -0.07 -1.86 16 24 C -0.17 -3.97 10.03 30.59 0.31 -3.66 16 25 C -0.16 -3.39 10.04 30.59 0.31 -3.08 16 26 N -0.53 -11.18 5.80 -171.07 -0.99 -12.17 16 27 H 0.43 5.68 7.84 -92.71 -0.73 4.95 16 28 C 0.14 3.87 6.69 41.78 0.28 4.15 16 29 C -0.11 -2.62 5.62 -11.54 -0.06 -2.68 16 30 C -0.16 -2.22 10.13 30.59 0.31 -1.91 16 31 C -0.16 -2.61 10.23 30.59 0.31 -2.30 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.07 2.35 5.88 -2.39 -0.01 2.34 16 35 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 36 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 37 H 0.38 19.80 7.71 -92.70 -0.72 19.09 16 38 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 39 H 0.05 2.22 6.73 -2.38 -0.02 2.20 16 40 H 0.06 2.19 7.01 -2.39 -0.02 2.18 16 41 H 0.14 4.98 4.80 -2.91 -0.01 4.97 16 42 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.07 2.20 7.90 -2.39 -0.02 2.19 16 44 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.08 2.08 7.93 -2.39 -0.02 2.06 16 47 H 0.12 3.36 6.63 -2.39 -0.02 3.34 16 48 H 0.11 1.07 7.08 -2.39 -0.02 1.06 16 49 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -68.20 404.25 1.85 -66.34 By element: Atomic # 1 Polarization: 49.44 SS G_CDS: -0.48 Total: 48.96 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.27 Total: -9.39 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -4.92 Total: -130.44 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.20 1.85 -66.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989040195.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.886 kcal (2) G-P(sol) polarization free energy of solvation -68.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds