Wall clock time and date at job start Wed Apr 1 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.00029 * 2 1 4 4 C 1.54330 * 109.99318 * 238.95948 * 2 1 3 5 5 C 1.55155 * 103.02345 * 218.66373 * 4 2 1 6 6 H 1.09006 * 111.00931 * 277.23640 * 5 4 2 7 7 N 1.46500 * 111.00707 * 153.37845 * 5 4 2 8 8 C 1.36939 * 120.00003 * 161.35170 * 7 5 4 9 9 H 1.08000 * 119.99776 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99801 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00122 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00002 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47013 * 90.00528 * 12 10 8 14 14 H 1.48507 * 109.47029 * 210.00129 * 12 10 8 15 15 H 1.48493 * 109.47244 * 330.00137 * 12 10 8 16 16 C 1.54918 * 101.57822 * 35.30732 * 5 4 2 17 17 N 1.47028 * 109.88197 * 121.09119 * 2 1 3 18 18 C 1.34775 * 125.65122 * 298.39579 * 17 2 1 19 19 O 1.21557 * 119.99748 * 3.41908 * 18 17 2 20 20 C 1.47856 * 120.00332 * 183.41766 * 18 17 2 21 21 C 1.39620 * 120.10559 * 332.80666 * 20 18 17 22 22 C 1.37979 * 120.00238 * 179.74651 * 21 20 18 23 23 C 1.38247 * 120.23189 * 0.25318 * 22 21 20 24 24 C 1.38982 * 120.21618 * 359.97375 * 23 22 21 25 25 N 1.39714 * 120.00477 * 180.02562 * 24 23 22 26 26 C 1.48535 * 110.99933 * 297.25316 * 25 24 23 27 27 C 1.54935 * 103.22729 * 159.72061 * 26 25 24 28 28 C 1.54591 * 102.92011 * 322.58615 * 27 26 25 29 29 C 1.47897 * 110.99901 * 54.64976 * 25 24 23 30 30 C 1.38682 * 119.99393 * 0.02797 * 24 23 22 31 31 H 1.08999 * 109.47444 * 300.35954 * 1 2 3 32 32 H 1.08998 * 109.47020 * 60.35891 * 1 2 3 33 33 H 1.09002 * 109.47327 * 180.35840 * 1 2 3 34 34 H 1.09008 * 110.84886 * 100.19871 * 4 2 1 35 35 H 1.08997 * 110.66745 * 337.04650 * 4 2 1 36 36 H 0.96998 * 119.99956 * 341.36063 * 7 5 4 37 37 H 0.96993 * 120.00229 * 180.02562 * 11 10 8 38 38 H 1.09003 * 110.36369 * 204.15170 * 16 5 4 39 39 H 1.08993 * 110.36236 * 81.83078 * 16 5 4 40 40 H 1.08004 * 119.99948 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.88606 * 180.26986 * 22 21 20 42 42 H 1.08001 * 119.89514 * 180.02562 * 23 22 21 43 43 H 1.09003 * 110.66680 * 278.15874 * 26 25 24 44 44 H 1.09007 * 110.66816 * 41.28343 * 26 25 24 45 45 H 1.09000 * 110.72184 * 204.22761 * 27 26 25 46 46 H 1.08993 * 110.87657 * 81.01523 * 27 26 25 47 47 H 1.09006 * 110.30982 * 263.04009 * 28 27 26 48 48 H 1.09005 * 110.39334 * 140.91555 * 28 27 26 49 49 H 1.09001 * 109.91817 * 333.50690 * 29 25 24 50 50 H 1.08999 * 109.91721 * 94.80630 * 29 25 24 51 51 H 1.08002 * 120.11569 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 6 3.2864 -1.5183 -0.6914 6 1 4.1670 -0.8768 -0.6578 7 7 3.5476 -2.7243 -1.4811 8 6 4.7735 -3.3313 -1.4188 9 1 5.5479 -2.9207 -0.7878 10 6 5.0212 -4.4736 -2.1675 11 7 6.1993 -5.0574 -2.1073 12 14 3.6819 -5.1832 -3.2594 13 1 3.7736 -4.5776 -4.6122 14 1 3.8555 -6.6545 -3.3630 15 1 2.3522 -4.8819 -2.6712 16 6 2.8099 -1.8824 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8074 -0.3619 2.4658 19 8 1.0907 0.5865 2.7198 20 6 2.4348 -1.1293 3.5629 21 6 2.7619 -2.4741 3.3791 22 6 3.3521 -3.1867 4.4026 23 6 3.6169 -2.5754 5.6140 24 6 3.2908 -1.2385 5.8088 25 7 3.5609 -0.6249 7.0346 26 6 2.7929 -1.2671 8.1319 27 6 3.5773 -0.8540 9.4025 28 6 5.0491 -0.9059 8.9322 29 6 4.9864 -0.7740 7.3992 30 6 2.6973 -0.5135 4.7863 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 -0.3634 -1.0276 0.0064 34 1 2.3598 -0.0450 -2.0191 35 1 1.3067 -1.4406 -1.6224 36 1 2.8522 -3.0927 -2.0482 37 1 6.3725 -5.8554 -2.6307 38 1 3.6655 -2.0411 1.3934 39 1 2.1802 -2.7717 0.7116 40 1 2.5572 -2.9554 2.4341 41 1 3.6084 -4.2257 4.2569 42 1 4.0794 -3.1382 6.4113 43 1 1.7742 -0.8805 8.1659 44 1 2.7904 -2.3510 8.0166 45 1 3.4052 -1.5653 10.2103 46 1 3.3075 0.1548 9.7148 47 1 5.5023 -1.8569 9.2120 48 1 5.6140 -0.0778 9.3604 49 1 5.3974 -1.6691 6.9324 50 1 5.5455 0.1052 7.0790 51 1 2.4427 0.5254 4.9357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989605097.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:01 Heat of formation + Delta-G solvation = 30.979062 kcal Electronic energy + Delta-G solvation = -30216.510675 eV Core-core repulsion = 26309.463299 eV Total energy + Delta-G solvation = -3907.047376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.72118 -39.86562 -37.91783 -37.17445 -34.39381 -33.16302 -31.85367 -31.59650 -30.79719 -29.19335 -28.96233 -28.49374 -25.78194 -24.48769 -23.44193 -22.89395 -21.69667 -21.23265 -20.77861 -20.46196 -19.09986 -17.78712 -17.42971 -16.67364 -16.46155 -16.14109 -15.69691 -15.18761 -14.87551 -14.48338 -14.32973 -14.14196 -13.97855 -13.67449 -13.51056 -13.42035 -13.19054 -13.03354 -12.69884 -12.58216 -12.39212 -12.31545 -12.12194 -11.93756 -11.80110 -11.66831 -11.51135 -11.45204 -11.38287 -11.11153 -10.91439 -10.72911 -10.72227 -10.42886 -10.13359 -9.75942 -9.70255 -9.09782 -9.03290 -8.88752 -8.68255 -8.43882 -7.44845 -5.89617 -3.28155 0.83717 1.26352 2.85789 3.05970 3.28358 3.31472 3.37827 3.65867 3.74528 4.31937 4.46611 4.47527 4.48736 4.63110 4.84243 4.84460 4.92353 4.96152 5.02890 5.07775 5.16351 5.21071 5.26485 5.32028 5.42606 5.46037 5.48119 5.48855 5.51238 5.54123 5.63699 5.65859 5.70708 5.71423 5.82365 5.88321 5.90855 5.93028 6.01910 6.18758 6.25259 6.29593 6.31107 6.33635 6.35525 6.46400 6.50068 6.64986 6.68124 7.19806 7.69133 7.84554 8.28346 8.30077 9.05356 9.77375 9.95324 11.27888 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.002865 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.520301 B = 9770.741880 C =11503.120776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.075 0.925 4 C -0.140 4.140 5 C 0.176 3.824 6 H 0.074 0.926 7 N -0.736 5.736 8 C -0.254 4.254 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.066 3.934 17 N -0.604 5.604 18 C 0.574 3.426 19 O -0.545 6.545 20 C -0.120 4.120 21 C -0.095 4.095 22 C -0.114 4.114 23 C -0.129 4.129 24 C 0.066 3.934 25 N -0.482 5.482 26 C 0.038 3.962 27 C -0.123 4.123 28 C -0.132 4.132 29 C 0.035 3.965 30 C -0.039 4.039 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.365 0.635 37 H 0.261 0.739 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.053 0.947 50 H 0.083 0.917 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 7.244 18.066 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.179 4.179 5 C 0.065 3.935 6 H 0.092 0.908 7 N -0.378 5.378 8 C -0.383 4.383 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.059 4.059 17 N -0.337 5.337 18 C 0.363 3.637 19 O -0.424 6.424 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.133 4.133 23 C -0.149 4.149 24 C -0.028 4.028 25 N -0.203 5.203 26 C -0.088 4.088 27 C -0.161 4.161 28 C -0.170 4.170 29 C -0.091 4.091 30 C -0.059 4.059 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.164 0.836 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.072 0.928 50 H 0.101 0.899 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.452 8.242 18.237 21.355 hybrid contribution -0.530 -1.710 -0.769 1.949 sum -7.981 6.532 17.468 20.285 Atomic orbital electron populations 1.22142 0.94964 1.02204 1.02647 1.21515 0.94353 0.96215 0.84273 0.90663 1.23052 0.98857 0.99799 0.96181 1.21295 0.95099 0.88722 0.88410 0.90779 1.42664 1.13905 1.29148 1.52059 1.19058 0.89156 1.06647 1.23475 0.88966 1.24680 0.96409 0.97826 0.99689 1.69694 1.21173 1.22120 1.44485 0.86585 0.81992 0.78737 0.81375 1.20922 1.21649 1.20238 1.23754 0.94971 0.87407 0.99767 1.48477 1.51953 1.28770 1.04451 1.17913 0.80796 0.83586 0.81409 1.90734 1.38625 1.29591 1.83440 1.19807 1.03261 0.94725 0.94607 1.22069 0.95688 0.93446 1.00106 1.21037 0.99144 1.00436 0.92688 1.21765 1.00036 0.95042 0.98060 1.18798 1.00778 0.91306 0.91922 1.62381 1.05716 1.52173 1.00039 1.23357 0.98469 0.97329 0.89655 1.22487 0.94525 1.02339 0.96795 1.22418 0.97290 1.02352 0.94912 1.23030 0.88791 1.01874 0.95433 1.20969 0.94762 1.00307 0.89825 0.91254 0.91865 0.92626 0.89912 0.90550 0.80192 0.92866 0.89927 0.91021 0.83588 0.85158 0.86076 0.89676 0.93131 0.90879 0.90526 0.91357 0.90760 0.92839 0.89906 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.11 37.16 0.34 -1.77 16 2 C 0.14 1.97 3.48 -66.95 -0.23 1.74 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -1.99 6.11 -24.89 -0.15 -2.14 16 5 C 0.18 3.07 3.69 -65.78 -0.24 2.83 16 6 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 7 N -0.74 -15.75 5.08 -51.34 -0.26 -16.01 16 8 C -0.25 -6.61 10.47 -15.06 -0.16 -6.77 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -27.74 13.97 55.49 0.78 -26.96 16 12 Si 0.88 20.79 27.73 -169.99 -4.71 16.08 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 16 C 0.07 1.06 4.71 -2.53 -0.01 1.05 16 17 N -0.60 -9.32 3.06 -164.11 -0.50 -9.82 16 18 C 0.57 9.43 7.46 -12.33 -0.09 9.34 16 19 O -0.54 -10.14 15.57 5.32 0.08 -10.05 16 20 C -0.12 -1.79 5.70 -104.99 -0.60 -2.39 16 21 C -0.09 -1.30 7.93 -39.16 -0.31 -1.61 16 22 C -0.11 -1.39 10.02 -39.67 -0.40 -1.79 16 23 C -0.13 -1.47 7.89 -39.30 -0.31 -1.78 16 24 C 0.07 0.81 4.86 -83.83 -0.41 0.41 16 25 N -0.48 -5.23 5.27 -167.20 -0.88 -6.12 16 26 C 0.04 0.34 6.43 -1.90 -0.01 0.32 16 27 C -0.12 -0.85 7.06 -24.87 -0.18 -1.03 16 28 C -0.13 -0.92 6.93 -25.38 -0.18 -1.10 16 29 C 0.04 0.32 6.48 -2.76 -0.02 0.31 16 30 C -0.04 -0.55 9.51 -38.97 -0.37 -0.92 16 31 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.08 1.06 7.70 -51.93 -0.40 0.66 16 36 H 0.36 7.67 5.57 -40.82 -0.23 7.44 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.08 1.36 6.16 -51.93 -0.32 1.04 16 39 H 0.07 1.16 7.29 -51.93 -0.38 0.78 16 40 H 0.15 2.02 4.55 -52.48 -0.24 1.78 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.12 1.16 7.02 -52.49 -0.37 0.79 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.44 6.99 -51.93 -0.36 0.07 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.05 0.50 6.32 -51.93 -0.33 0.17 16 50 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.14 1.99 7.88 -52.49 -0.41 1.57 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -30.75 394.99 -11.03 -41.78 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -8.05 Total: 10.24 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -3.42 Total: -5.09 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.87 Total: -58.91 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.71 Total: 16.08 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.75 -11.03 -41.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989605097.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.756 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds