Wall clock time and date at job start Wed Apr 1 2020 03:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.00029 * 2 1 4 4 C 1.54330 * 109.99318 * 238.95948 * 2 1 3 5 5 C 1.55155 * 103.02345 * 218.66373 * 4 2 1 6 6 H 1.09006 * 111.00931 * 277.23640 * 5 4 2 7 7 N 1.46500 * 111.00707 * 153.37845 * 5 4 2 8 8 C 1.36939 * 120.00003 * 161.35170 * 7 5 4 9 9 H 1.08000 * 119.99776 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99801 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00122 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00002 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47013 * 90.00528 * 12 10 8 14 14 H 1.48507 * 109.47029 * 210.00129 * 12 10 8 15 15 H 1.48493 * 109.47244 * 330.00137 * 12 10 8 16 16 C 1.54918 * 101.57822 * 35.30732 * 5 4 2 17 17 N 1.47028 * 109.88197 * 121.09119 * 2 1 3 18 18 C 1.34775 * 125.65122 * 298.39579 * 17 2 1 19 19 O 1.21557 * 119.99748 * 3.41908 * 18 17 2 20 20 C 1.47856 * 120.00332 * 183.41766 * 18 17 2 21 21 C 1.39620 * 120.10559 * 332.80666 * 20 18 17 22 22 C 1.37979 * 120.00238 * 179.74651 * 21 20 18 23 23 C 1.38247 * 120.23189 * 0.25318 * 22 21 20 24 24 C 1.38982 * 120.21618 * 359.97375 * 23 22 21 25 25 N 1.39714 * 120.00477 * 180.02562 * 24 23 22 26 26 C 1.48535 * 110.99933 * 297.25316 * 25 24 23 27 27 C 1.54935 * 103.22729 * 159.72061 * 26 25 24 28 28 C 1.54591 * 102.92011 * 322.58615 * 27 26 25 29 29 C 1.47897 * 110.99901 * 54.64976 * 25 24 23 30 30 C 1.38682 * 119.99393 * 0.02797 * 24 23 22 31 31 H 1.08999 * 109.47444 * 300.35954 * 1 2 3 32 32 H 1.08998 * 109.47020 * 60.35891 * 1 2 3 33 33 H 1.09002 * 109.47327 * 180.35840 * 1 2 3 34 34 H 1.09008 * 110.84886 * 100.19871 * 4 2 1 35 35 H 1.08997 * 110.66745 * 337.04650 * 4 2 1 36 36 H 0.96998 * 119.99956 * 341.36063 * 7 5 4 37 37 H 0.96993 * 120.00229 * 180.02562 * 11 10 8 38 38 H 1.09003 * 110.36369 * 204.15170 * 16 5 4 39 39 H 1.08993 * 110.36236 * 81.83078 * 16 5 4 40 40 H 1.08004 * 119.99948 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.88606 * 180.26986 * 22 21 20 42 42 H 1.08001 * 119.89514 * 180.02562 * 23 22 21 43 43 H 1.09003 * 110.66680 * 278.15874 * 26 25 24 44 44 H 1.09007 * 110.66816 * 41.28343 * 26 25 24 45 45 H 1.09000 * 110.72184 * 204.22761 * 27 26 25 46 46 H 1.08993 * 110.87657 * 81.01523 * 27 26 25 47 47 H 1.09006 * 110.30982 * 263.04009 * 28 27 26 48 48 H 1.09005 * 110.39334 * 140.91555 * 28 27 26 49 49 H 1.09001 * 109.91817 * 333.50690 * 29 25 24 50 50 H 1.08999 * 109.91721 * 94.80630 * 29 25 24 51 51 H 1.08002 * 120.11569 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 6 3.2864 -1.5183 -0.6914 6 1 4.1670 -0.8768 -0.6578 7 7 3.5476 -2.7243 -1.4811 8 6 4.7735 -3.3313 -1.4188 9 1 5.5479 -2.9207 -0.7878 10 6 5.0212 -4.4736 -2.1675 11 7 6.1993 -5.0574 -2.1073 12 14 3.6819 -5.1832 -3.2594 13 1 3.7736 -4.5776 -4.6122 14 1 3.8555 -6.6545 -3.3630 15 1 2.3522 -4.8819 -2.6712 16 6 2.8099 -1.8824 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8074 -0.3619 2.4658 19 8 1.0907 0.5865 2.7198 20 6 2.4348 -1.1293 3.5629 21 6 2.7619 -2.4741 3.3791 22 6 3.3521 -3.1867 4.4026 23 6 3.6169 -2.5754 5.6140 24 6 3.2908 -1.2385 5.8088 25 7 3.5609 -0.6249 7.0346 26 6 2.7929 -1.2671 8.1319 27 6 3.5773 -0.8540 9.4025 28 6 5.0491 -0.9059 8.9322 29 6 4.9864 -0.7740 7.3992 30 6 2.6973 -0.5135 4.7863 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 -0.3634 -1.0276 0.0064 34 1 2.3598 -0.0450 -2.0191 35 1 1.3067 -1.4406 -1.6224 36 1 2.8522 -3.0927 -2.0482 37 1 6.3725 -5.8554 -2.6307 38 1 3.6655 -2.0411 1.3934 39 1 2.1802 -2.7717 0.7116 40 1 2.5572 -2.9554 2.4341 41 1 3.6084 -4.2257 4.2569 42 1 4.0794 -3.1382 6.4113 43 1 1.7742 -0.8805 8.1659 44 1 2.7904 -2.3510 8.0166 45 1 3.4052 -1.5653 10.2103 46 1 3.3075 0.1548 9.7148 47 1 5.5023 -1.8569 9.2120 48 1 5.6140 -0.0778 9.3604 49 1 5.3974 -1.6691 6.9324 50 1 5.5455 0.1052 7.0790 51 1 2.4427 0.5254 4.9357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989605097.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:00 Heat of formation + Delta-G solvation = 12.810371 kcal Electronic energy + Delta-G solvation = -30217.298528 eV Core-core repulsion = 26309.463299 eV Total energy + Delta-G solvation = -3907.835229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.82791 -40.88703 -39.04816 -38.32900 -36.11816 -34.10337 -33.49801 -32.86232 -31.86374 -30.53325 -29.85598 -29.41059 -26.98763 -25.87800 -24.97933 -23.80888 -22.84323 -21.93341 -21.89962 -21.69343 -20.29942 -19.62842 -18.48026 -17.89959 -17.49863 -17.16879 -16.71141 -16.45799 -16.23534 -15.87288 -15.46360 -15.24396 -15.07114 -14.92650 -14.84305 -14.50836 -14.39480 -14.19732 -13.93470 -13.75324 -13.65405 -13.22981 -13.16882 -13.03068 -12.95099 -12.87766 -12.80079 -12.49390 -12.26396 -12.20741 -12.10830 -12.04220 -11.87398 -11.79956 -11.55632 -11.46419 -11.10540 -10.90919 -10.10974 -9.80861 -9.73542 -9.58123 -9.32919 -7.99991 -5.36086 -0.22854 0.23549 1.42619 1.45450 1.52340 1.65350 1.84891 2.51038 2.66383 2.82564 3.23940 3.29243 3.61111 3.66716 3.74387 3.82030 3.85873 3.87849 3.99251 4.03546 4.06975 4.14114 4.26853 4.30092 4.35167 4.41272 4.43443 4.46429 4.56452 4.68863 4.69111 4.74096 4.80727 4.85520 4.89075 4.94244 5.02625 5.02893 5.06335 5.11667 5.16452 5.24328 5.25681 5.29870 5.33172 5.35095 5.39730 5.62513 5.76427 5.79233 6.22786 6.29622 6.40659 7.01101 7.08621 7.81116 8.01356 9.20759 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.002865 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.520301 B = 9770.741880 C =11503.120776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.077 0.923 4 C -0.125 4.125 5 C 0.167 3.833 6 H 0.062 0.938 7 N -0.736 5.736 8 C -0.232 4.232 9 H 0.060 0.940 10 C -0.058 4.058 11 N -0.981 5.981 12 Si 0.951 3.049 13 H -0.280 1.280 14 H -0.301 1.301 15 H -0.246 1.246 16 C 0.080 3.920 17 N -0.602 5.602 18 C 0.571 3.429 19 O -0.572 6.572 20 C -0.136 4.136 21 C -0.103 4.103 22 C -0.114 4.114 23 C -0.121 4.121 24 C 0.071 3.929 25 N -0.498 5.498 26 C 0.034 3.966 27 C -0.117 4.117 28 C -0.126 4.126 29 C 0.031 3.969 30 C -0.053 4.053 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.371 0.629 37 H 0.258 0.742 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.052 0.948 50 H 0.075 0.925 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 6.902 18.766 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 H 0.095 0.905 4 C -0.163 4.163 5 C 0.057 3.943 6 H 0.080 0.920 7 N -0.378 5.378 8 C -0.363 4.363 9 H 0.078 0.922 10 C -0.249 4.249 11 N -0.631 5.631 12 Si 0.778 3.222 13 H -0.206 1.206 14 H -0.228 1.228 15 H -0.170 1.170 16 C -0.046 4.046 17 N -0.334 5.334 18 C 0.361 3.639 19 O -0.453 6.453 20 C -0.140 4.140 21 C -0.121 4.121 22 C -0.133 4.133 23 C -0.141 4.141 24 C -0.023 4.023 25 N -0.220 5.220 26 C -0.091 4.091 27 C -0.155 4.155 28 C -0.164 4.164 29 C -0.095 4.095 30 C -0.073 4.073 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.205 0.795 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.919 7.950 18.956 22.407 hybrid contribution -0.026 -1.495 -0.867 1.728 sum -8.945 6.454 18.089 21.187 Atomic orbital electron populations 1.22068 0.93760 1.02294 1.02990 1.21675 0.95302 0.96176 0.83606 0.90495 1.22985 0.97151 0.99793 0.96415 1.21419 0.96350 0.87515 0.88988 0.91987 1.42554 1.12379 1.30056 1.52831 1.18977 0.89999 1.05951 1.21362 0.92221 1.25457 0.98757 0.98744 1.01986 1.69876 1.23819 1.22984 1.46400 0.85481 0.80375 0.76972 0.79348 1.20642 1.22782 1.17031 1.23473 0.94850 0.87707 0.98531 1.48489 1.51610 1.28566 1.04725 1.18190 0.80438 0.83331 0.81921 1.90710 1.39923 1.30858 1.83834 1.19765 1.04429 0.95250 0.94507 1.22056 0.96420 0.93067 1.00587 1.21294 0.98282 1.01263 0.92431 1.22002 0.99032 0.94665 0.98367 1.18898 0.99701 0.91592 0.92143 1.62379 1.06951 1.52700 0.99985 1.23439 0.98328 0.97489 0.89875 1.22485 0.93949 1.02824 0.96267 1.22416 0.97561 1.03468 0.92973 1.23096 0.87658 1.01500 0.97261 1.20963 0.95943 1.00029 0.90391 0.93131 0.89307 0.92578 0.88081 0.89371 0.79504 0.93359 0.90744 0.90642 0.83979 0.83245 0.83642 0.90197 0.92596 0.88937 0.90634 0.90010 0.89937 0.92916 0.90651 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.11 71.98 0.66 -3.05 16 2 C 0.14 3.61 3.48 45.34 0.16 3.76 16 3 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.13 -3.23 6.11 31.78 0.19 -3.03 16 5 C 0.17 5.65 3.69 46.39 0.17 5.82 16 6 H 0.06 2.26 8.13 -2.38 -0.02 2.24 16 7 N -0.74 -30.47 5.08 -316.36 -1.61 -32.07 16 8 C -0.23 -12.14 10.47 84.03 0.88 -11.26 16 9 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 10 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 11 N -0.98 -60.00 13.97 21.65 0.30 -59.70 16 12 Si 0.95 42.36 27.73 68.60 1.90 44.27 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 14 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 15 H -0.25 -9.61 6.52 99.48 0.65 -8.96 16 16 C 0.08 2.51 4.71 86.86 0.41 2.92 16 17 N -0.60 -18.35 3.06 -791.39 -2.43 -20.78 16 18 C 0.57 19.05 7.46 86.79 0.65 19.70 16 19 O -0.57 -21.76 15.57 -3.90 -0.06 -21.82 16 20 C -0.14 -4.11 5.70 -20.11 -0.11 -4.23 16 21 C -0.10 -2.81 7.93 22.54 0.18 -2.63 16 22 C -0.11 -2.64 10.02 22.21 0.22 -2.41 16 23 C -0.12 -2.57 7.89 22.45 0.18 -2.40 16 24 C 0.07 1.72 4.86 38.17 0.19 1.90 16 25 N -0.50 -10.45 5.27 -682.88 -3.60 -14.06 16 26 C 0.03 0.56 6.43 86.65 0.56 1.11 16 27 C -0.12 -1.36 7.06 31.80 0.22 -1.13 16 28 C -0.13 -1.48 6.93 31.47 0.22 -1.26 16 29 C 0.03 0.53 6.48 86.45 0.56 1.10 16 30 C -0.05 -1.54 9.51 22.67 0.22 -1.32 16 31 H 0.05 1.43 6.77 -2.39 -0.02 1.42 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.09 2.13 7.70 -2.39 -0.02 2.11 16 36 H 0.37 14.56 5.57 -92.71 -0.52 14.04 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.07 2.48 6.16 -2.39 -0.01 2.46 16 39 H 0.08 2.35 7.29 -2.39 -0.02 2.33 16 40 H 0.14 3.91 4.55 -2.91 -0.01 3.89 16 41 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 42 H 0.15 2.38 7.02 -2.91 -0.02 2.36 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 0.84 6.99 -2.38 -0.02 0.83 16 45 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.05 0.90 6.32 -2.39 -0.02 0.89 16 50 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.12 3.82 7.88 -2.91 -0.02 3.80 16 Total: -1.00 -67.76 394.99 0.88 -66.89 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.36 Total: 36.39 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 6.01 Total: 0.88 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -7.33 Total: -126.61 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.06 Total: -21.82 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.90 Total: 44.27 kcal Total: -67.76 0.88 -66.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989605097.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.698 kcal (2) G-P(sol) polarization free energy of solvation -67.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds