Wall clock time and date at job start Wed Apr 1 2020 02:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00416 * 2 1 4 4 N 1.46499 * 109.47430 * 120.93706 * 3 2 1 5 5 C 1.35530 * 125.67941 * 265.02488 * 4 3 2 6 6 C 1.35456 * 108.87288 * 180.02562 * 5 4 3 7 7 C 1.39838 * 107.86399 * 359.74448 * 6 5 4 8 8 C 1.37652 * 125.67468 * 85.04805 * 4 3 2 9 9 C 1.46675 * 126.23864 * 359.97438 * 8 4 3 10 10 O 1.21703 * 119.99365 * 5.89829 * 9 8 4 11 11 N 1.34776 * 120.00427 * 185.89877 * 9 8 4 12 12 C 1.47376 * 125.74582 * 354.99283 * 11 9 8 13 13 C 1.55439 * 106.74043 * 181.02304 * 12 11 9 14 14 H 1.08999 * 112.49716 * 213.26640 * 13 12 11 15 15 C 1.52988 * 106.45115 * 89.99112 * 13 12 11 16 16 C 1.52594 * 111.01842 * 197.04040 * 15 13 12 17 17 C 1.53311 * 108.45444 * 62.28970 * 16 15 13 18 18 C 1.52817 * 108.15548 * 296.15019 * 17 16 15 19 19 H 1.08990 * 109.04559 * 179.63602 * 18 17 16 20 20 N 1.46508 * 109.04282 * 298.58520 * 18 17 16 21 21 C 1.36930 * 119.99568 * 276.04232 * 20 18 17 22 22 H 1.07996 * 120.00292 * 359.72041 * 21 20 18 23 23 C 1.38818 * 119.99465 * 179.97438 * 21 20 18 24 24 N 1.31615 * 119.99930 * 359.72610 * 23 21 20 25 25 Si 1.86803 * 119.99543 * 179.72354 * 23 21 20 26 26 H 1.48496 * 109.47086 * 90.00541 * 25 23 21 27 27 H 1.48504 * 109.46909 * 210.00012 * 25 23 21 28 28 H 1.48503 * 109.47409 * 330.00113 * 25 23 21 29 29 C 1.50859 * 111.60340 * 59.10684 * 18 17 16 30 30 H 1.09005 * 109.65615 * 184.93549 * 29 18 17 31 31 C 1.47937 * 125.74341 * 174.94782 * 11 9 8 32 32 H 1.07997 * 120.00184 * 179.97438 * 1 2 3 33 33 H 1.07995 * 119.99629 * 0.02562 * 1 2 3 34 34 H 1.08007 * 120.00290 * 179.97438 * 2 1 3 35 35 H 1.08999 * 109.47183 * 0.93822 * 3 2 1 36 36 H 1.09001 * 109.47393 * 240.93865 * 3 2 1 37 37 H 1.07997 * 125.56496 * 0.05403 * 5 4 3 38 38 H 1.07998 * 126.06837 * 180.02562 * 6 5 4 39 39 H 1.08000 * 126.46311 * 180.30570 * 7 6 5 40 40 H 1.09002 * 110.00492 * 61.70272 * 12 11 9 41 41 H 1.08999 * 110.00381 * 300.34725 * 12 11 9 42 42 H 1.09003 * 109.17124 * 76.63764 * 15 13 12 43 43 H 1.09004 * 109.16819 * 317.43841 * 15 13 12 44 44 H 1.09003 * 109.63856 * 302.59824 * 16 15 13 45 45 H 1.09001 * 109.80875 * 182.08062 * 16 15 13 46 46 H 1.09000 * 109.72383 * 176.48644 * 17 16 15 47 47 H 1.08994 * 109.76528 * 55.83765 * 17 16 15 48 48 H 0.97001 * 120.00053 * 96.03740 * 20 18 17 49 49 H 0.97008 * 119.99380 * 179.97438 * 24 23 21 50 50 H 1.09000 * 110.57220 * 323.09744 * 31 11 9 51 51 H 1.09000 * 110.56593 * 85.96563 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9227 1.3729 1.1847 5 6 2.6025 1.9661 2.3604 6 6 3.6420 1.8287 3.2180 7 6 4.6504 1.1183 2.5593 8 6 4.1898 0.8452 1.2887 9 6 4.9154 0.1193 0.2410 10 8 4.4418 0.0295 -0.8765 11 7 6.1066 -0.4483 0.5157 12 6 6.8433 -0.3314 1.7868 13 6 8.1646 -1.1315 1.6136 14 1 8.4924 -1.6011 2.5410 15 6 9.1995 -0.1459 1.0676 16 6 10.3937 -0.8826 0.4677 17 6 9.8998 -1.7275 -0.7124 18 6 8.9366 -2.7836 -0.1719 19 1 8.5711 -3.3893 -1.0010 20 7 9.6534 -3.6466 0.7704 21 6 10.3873 -4.7056 0.3067 22 1 10.4340 -4.9074 -0.7532 23 6 11.0669 -5.5229 1.1995 24 7 11.0102 -5.2768 2.4912 25 14 12.0617 -6.9722 0.5675 26 1 13.4540 -6.5348 0.2931 27 1 12.0736 -8.0483 1.5909 28 1 11.4484 -7.4857 -0.6837 29 6 7.7611 -2.1542 0.5337 30 1 7.1424 -2.9322 0.9810 31 6 6.8942 -1.2944 -0.4076 32 1 -0.5400 -0.9353 -0.0004 33 1 -0.5399 0.9353 -0.0004 34 1 1.8501 -0.9353 0.0004 35 1 1.3554 2.1335 0.0168 36 1 2.6776 1.3701 -0.8983 37 1 1.6704 2.4663 2.5783 38 1 3.6828 2.1979 4.2321 39 1 5.6099 0.8378 2.9681 40 1 6.2541 -0.7559 2.5997 41 1 7.0655 0.7153 1.9940 42 1 9.5451 0.4958 1.8780 43 1 8.7354 0.4703 0.2975 44 1 10.8401 -1.5314 1.2213 45 1 11.1342 -0.1630 0.1186 46 1 10.7465 -2.2147 -1.1959 47 1 9.3826 -1.0911 -1.4304 48 1 9.6082 -3.4678 1.7227 49 1 11.4849 -5.8482 3.1151 50 1 6.2358 -1.9242 -1.0058 51 1 7.5233 -0.6777 -1.0495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992709699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:09 Heat of formation + Delta-G solvation = 57.370331 kcal Electronic energy + Delta-G solvation = -30798.119203 eV Core-core repulsion = 26892.216239 eV Total energy + Delta-G solvation = -3905.902964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.62528 -40.28870 -38.24998 -35.85520 -35.26312 -33.39208 -31.71117 -31.43894 -30.81277 -29.72458 -28.72363 -26.62237 -26.16420 -24.92383 -23.30702 -21.95189 -21.48429 -21.17322 -20.60566 -20.42879 -19.17122 -18.05277 -17.20834 -17.15019 -16.34688 -16.04615 -15.74038 -15.13343 -14.98696 -14.61024 -14.48312 -14.15387 -13.90937 -13.64505 -13.49892 -13.45506 -13.19248 -12.99075 -12.82966 -12.69316 -12.59910 -12.18283 -12.02010 -11.65135 -11.58815 -11.52881 -11.34983 -11.03718 -10.90774 -10.84196 -10.68448 -10.19864 -10.13260 -10.01458 -9.80269 -9.73469 -9.57051 -9.45825 -8.91370 -8.85323 -8.63010 -8.29278 -6.94994 -5.76841 -3.04528 1.38355 1.70767 2.57568 2.62935 3.25366 3.35094 3.43503 3.49442 3.50344 4.38999 4.43038 4.53196 4.59027 4.62128 4.81922 4.92935 4.95750 5.00348 5.20796 5.26240 5.30645 5.36724 5.42683 5.49712 5.52770 5.57288 5.63036 5.76588 5.82130 5.83693 5.92552 5.93701 5.98679 6.01561 6.08194 6.14659 6.19056 6.22149 6.26831 6.37080 6.40914 6.46609 6.53238 6.67477 6.82770 6.85490 6.86828 7.04371 7.06581 7.11810 7.52670 7.71235 8.15169 8.42022 9.53811 10.10674 10.46212 11.45818 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.002525 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.344286 B =11085.869430 C =11470.185880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.162 4.162 3 C 0.126 3.874 4 N -0.407 5.407 5 C 0.013 3.987 6 C -0.209 4.209 7 C -0.152 4.152 8 C -0.044 4.044 9 C 0.600 3.400 10 O -0.556 6.556 11 N -0.602 5.602 12 C 0.094 3.906 13 C -0.088 4.088 14 H 0.103 0.897 15 C -0.109 4.109 16 C -0.113 4.113 17 C -0.135 4.135 18 C 0.189 3.811 19 H 0.047 0.953 20 N -0.719 5.719 21 C -0.235 4.235 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 C -0.095 4.095 30 H 0.081 0.919 31 C 0.118 3.882 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.165 0.835 38 H 0.141 0.859 39 H 0.157 0.843 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.077 0.923 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.905 16.899 -0.371 23.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.181 4.181 3 C 0.006 3.994 4 N -0.080 5.080 5 C -0.121 4.121 6 C -0.233 4.233 7 C -0.178 4.178 8 C -0.157 4.157 9 C 0.390 3.610 10 O -0.437 6.437 11 N -0.334 5.334 12 C -0.029 4.029 13 C -0.107 4.107 14 H 0.121 0.879 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.175 4.175 18 C 0.079 3.921 19 H 0.065 0.935 20 N -0.360 5.360 21 C -0.366 4.366 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.209 1.209 29 C -0.115 4.115 30 H 0.099 0.901 31 C -0.004 4.004 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.182 0.818 38 H 0.159 0.841 39 H 0.174 0.826 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.359 16.708 -1.411 24.135 hybrid contribution 0.514 -0.764 0.151 0.933 sum -16.845 15.945 -1.261 23.229 Atomic orbital electron populations 1.23901 0.95482 1.02284 0.99597 1.23105 0.96001 0.98544 1.00443 1.21153 0.93614 0.96523 0.88109 1.43943 1.11753 1.40755 1.11514 1.21984 1.01155 1.03431 0.85573 1.20860 0.94690 1.07358 1.00414 1.22020 1.01018 1.02249 0.92471 1.20006 0.88356 1.10259 0.97080 1.16581 0.79754 0.78397 0.86242 1.90772 1.67973 1.61954 1.22962 1.48258 1.18755 1.49969 1.16463 1.22924 0.93324 1.00546 0.86064 1.22288 0.93018 0.95416 0.99934 0.87907 1.21530 0.96220 0.97134 0.99752 1.21385 0.96204 0.98266 0.99154 1.22198 1.00443 0.98005 0.96843 1.19514 0.89257 0.90748 0.92616 0.93513 1.42383 1.57485 1.31146 1.05030 1.19227 1.21706 1.03377 0.92304 0.91259 1.24697 1.01259 0.99610 0.95329 1.69650 1.47314 1.40676 1.00524 0.86236 0.80223 0.82496 0.77510 1.21827 1.21888 1.20853 1.21878 0.97412 0.96554 0.95659 0.90100 1.22351 0.93161 0.92414 0.92494 0.87795 0.88365 0.86667 0.89079 0.86682 0.81751 0.84073 0.82618 0.90819 0.90707 0.92513 0.92675 0.90172 0.93463 0.91869 0.93772 0.78199 0.93591 0.90501 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 14.32 29.02 0.42 -0.90 16 2 C -0.16 -1.60 9.85 -36.03 -0.35 -1.96 16 3 C 0.13 1.24 5.93 -5.19 -0.03 1.21 16 4 N -0.41 -4.60 2.74 -114.15 -0.31 -4.92 16 5 C 0.01 0.13 11.37 -16.91 -0.19 -0.07 16 6 C -0.21 -2.08 10.81 -39.98 -0.43 -2.51 16 7 C -0.15 -1.74 9.34 -39.11 -0.37 -2.11 16 8 C -0.04 -0.58 6.86 -81.98 -0.56 -1.14 16 9 C 0.60 9.01 7.81 -12.85 -0.10 8.91 16 10 O -0.56 -9.53 15.07 5.19 0.08 -9.45 16 11 N -0.60 -8.39 3.34 -171.11 -0.57 -8.96 16 12 C 0.09 1.12 4.27 -2.27 -0.01 1.11 16 13 C -0.09 -1.20 3.27 -88.75 -0.29 -1.49 16 14 H 0.10 1.49 7.93 -51.93 -0.41 1.08 16 15 C -0.11 -1.45 4.60 -26.95 -0.12 -1.58 16 16 C -0.11 -1.79 5.85 -26.78 -0.16 -1.94 16 17 C -0.13 -2.27 5.42 -26.66 -0.14 -2.42 16 18 C 0.19 3.49 2.53 -69.09 -0.18 3.32 16 19 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 20 N -0.72 -16.69 4.17 -54.57 -0.23 -16.92 16 21 C -0.23 -6.23 9.90 -15.06 -0.15 -6.38 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 25 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 29 C -0.10 -1.48 2.42 -90.50 -0.22 -1.70 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 31 C 0.12 1.71 5.79 -2.64 -0.02 1.70 16 32 H 0.10 0.71 8.06 -52.49 -0.42 0.28 16 33 H 0.10 0.56 7.83 -52.49 -0.41 0.15 16 34 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.09 0.62 7.77 -51.93 -0.40 0.22 16 36 H 0.12 1.33 6.49 -51.93 -0.34 1.00 16 37 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.16 1.57 4.42 -52.49 -0.23 1.34 16 40 H 0.07 0.83 6.89 -51.93 -0.36 0.48 16 41 H 0.07 0.80 6.62 -51.93 -0.34 0.45 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.72 6.93 -51.93 -0.36 0.36 16 44 H 0.08 1.52 7.38 -51.93 -0.38 1.14 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.04 0.66 6.69 -51.93 -0.35 0.31 16 48 H 0.38 9.42 7.22 -40.82 -0.29 9.12 16 49 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.08 1.17 8.10 -51.93 -0.42 0.74 16 51 H 0.07 1.07 5.78 -51.93 -0.30 0.77 16 LS Contribution 394.15 15.07 5.94 5.94 Total: -1.00 -31.00 394.15 -10.35 -41.35 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.95 Total: 10.86 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -3.00 Total: -8.42 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.39 Total: -57.28 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.00 -10.35 -41.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992709699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.721 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds