Wall clock time and date at job start Wed Apr 1 2020 02:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00416 * 2 1 4 4 N 1.46499 * 109.47430 * 120.93706 * 3 2 1 5 5 C 1.35530 * 125.67941 * 265.02488 * 4 3 2 6 6 C 1.35456 * 108.87288 * 180.02562 * 5 4 3 7 7 C 1.39838 * 107.86399 * 359.74448 * 6 5 4 8 8 C 1.37652 * 125.67468 * 85.04805 * 4 3 2 9 9 C 1.46675 * 126.23864 * 359.97438 * 8 4 3 10 10 O 1.21703 * 119.99365 * 5.89829 * 9 8 4 11 11 N 1.34776 * 120.00427 * 185.89877 * 9 8 4 12 12 C 1.47376 * 125.74582 * 354.99283 * 11 9 8 13 13 C 1.55439 * 106.74043 * 181.02304 * 12 11 9 14 14 H 1.08999 * 112.49716 * 213.26640 * 13 12 11 15 15 C 1.52988 * 106.45115 * 89.99112 * 13 12 11 16 16 C 1.52594 * 111.01842 * 197.04040 * 15 13 12 17 17 C 1.53311 * 108.45444 * 62.28970 * 16 15 13 18 18 C 1.52817 * 108.15548 * 296.15019 * 17 16 15 19 19 H 1.08990 * 109.04559 * 179.63602 * 18 17 16 20 20 N 1.46508 * 109.04282 * 298.58520 * 18 17 16 21 21 C 1.36930 * 119.99568 * 276.04232 * 20 18 17 22 22 H 1.07996 * 120.00292 * 359.72041 * 21 20 18 23 23 C 1.38818 * 119.99465 * 179.97438 * 21 20 18 24 24 N 1.31615 * 119.99930 * 359.72610 * 23 21 20 25 25 Si 1.86803 * 119.99543 * 179.72354 * 23 21 20 26 26 H 1.48496 * 109.47086 * 90.00541 * 25 23 21 27 27 H 1.48504 * 109.46909 * 210.00012 * 25 23 21 28 28 H 1.48503 * 109.47409 * 330.00113 * 25 23 21 29 29 C 1.50859 * 111.60340 * 59.10684 * 18 17 16 30 30 H 1.09005 * 109.65615 * 184.93549 * 29 18 17 31 31 C 1.47937 * 125.74341 * 174.94782 * 11 9 8 32 32 H 1.07997 * 120.00184 * 179.97438 * 1 2 3 33 33 H 1.07995 * 119.99629 * 0.02562 * 1 2 3 34 34 H 1.08007 * 120.00290 * 179.97438 * 2 1 3 35 35 H 1.08999 * 109.47183 * 0.93822 * 3 2 1 36 36 H 1.09001 * 109.47393 * 240.93865 * 3 2 1 37 37 H 1.07997 * 125.56496 * 0.05403 * 5 4 3 38 38 H 1.07998 * 126.06837 * 180.02562 * 6 5 4 39 39 H 1.08000 * 126.46311 * 180.30570 * 7 6 5 40 40 H 1.09002 * 110.00492 * 61.70272 * 12 11 9 41 41 H 1.08999 * 110.00381 * 300.34725 * 12 11 9 42 42 H 1.09003 * 109.17124 * 76.63764 * 15 13 12 43 43 H 1.09004 * 109.16819 * 317.43841 * 15 13 12 44 44 H 1.09003 * 109.63856 * 302.59824 * 16 15 13 45 45 H 1.09001 * 109.80875 * 182.08062 * 16 15 13 46 46 H 1.09000 * 109.72383 * 176.48644 * 17 16 15 47 47 H 1.08994 * 109.76528 * 55.83765 * 17 16 15 48 48 H 0.97001 * 120.00053 * 96.03740 * 20 18 17 49 49 H 0.97008 * 119.99380 * 179.97438 * 24 23 21 50 50 H 1.09000 * 110.57220 * 323.09744 * 31 11 9 51 51 H 1.09000 * 110.56593 * 85.96563 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9227 1.3729 1.1847 5 6 2.6025 1.9661 2.3604 6 6 3.6420 1.8287 3.2180 7 6 4.6504 1.1183 2.5593 8 6 4.1898 0.8452 1.2887 9 6 4.9154 0.1193 0.2410 10 8 4.4418 0.0295 -0.8765 11 7 6.1066 -0.4483 0.5157 12 6 6.8433 -0.3314 1.7868 13 6 8.1646 -1.1315 1.6136 14 1 8.4924 -1.6011 2.5410 15 6 9.1995 -0.1459 1.0676 16 6 10.3937 -0.8826 0.4677 17 6 9.8998 -1.7275 -0.7124 18 6 8.9366 -2.7836 -0.1719 19 1 8.5711 -3.3893 -1.0010 20 7 9.6534 -3.6466 0.7704 21 6 10.3873 -4.7056 0.3067 22 1 10.4340 -4.9074 -0.7532 23 6 11.0669 -5.5229 1.1995 24 7 11.0102 -5.2768 2.4912 25 14 12.0617 -6.9722 0.5675 26 1 13.4540 -6.5348 0.2931 27 1 12.0736 -8.0483 1.5909 28 1 11.4484 -7.4857 -0.6837 29 6 7.7611 -2.1542 0.5337 30 1 7.1424 -2.9322 0.9810 31 6 6.8942 -1.2944 -0.4076 32 1 -0.5400 -0.9353 -0.0004 33 1 -0.5399 0.9353 -0.0004 34 1 1.8501 -0.9353 0.0004 35 1 1.3554 2.1335 0.0168 36 1 2.6776 1.3701 -0.8983 37 1 1.6704 2.4663 2.5783 38 1 3.6828 2.1979 4.2321 39 1 5.6099 0.8378 2.9681 40 1 6.2541 -0.7559 2.5997 41 1 7.0655 0.7153 1.9940 42 1 9.5451 0.4958 1.8780 43 1 8.7354 0.4703 0.2975 44 1 10.8401 -1.5314 1.2213 45 1 11.1342 -0.1630 0.1186 46 1 10.7465 -2.2147 -1.1959 47 1 9.3826 -1.0911 -1.4304 48 1 9.6082 -3.4678 1.7227 49 1 11.4849 -5.8482 3.1151 50 1 6.2358 -1.9242 -1.0058 51 1 7.5233 -0.6777 -1.0495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992709699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:08 Heat of formation + Delta-G solvation = 40.841156 kcal Electronic energy + Delta-G solvation = -30798.835962 eV Core-core repulsion = 26892.216239 eV Total energy + Delta-G solvation = -3906.619723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.49557 -41.44369 -39.44490 -37.11798 -36.13839 -35.05378 -33.12258 -32.49917 -31.90209 -31.11093 -29.91540 -27.82470 -27.00401 -26.30739 -24.95712 -23.25634 -22.66718 -22.19727 -21.52085 -21.16211 -20.09793 -19.35282 -19.15740 -18.16538 -17.41019 -17.25673 -16.62981 -16.45305 -16.08745 -15.98252 -15.54736 -15.28842 -15.22740 -15.14434 -14.84126 -14.55097 -14.12018 -14.05904 -14.03705 -13.70628 -13.57605 -13.34929 -13.10869 -12.89410 -12.80287 -12.76810 -12.65907 -12.59759 -12.24582 -12.23134 -12.12540 -11.99955 -11.77958 -11.34102 -11.14493 -11.06383 -10.82571 -10.66912 -10.55775 -9.79055 -9.65427 -9.13153 -8.93161 -7.89629 -5.15354 0.47713 1.02925 1.48748 1.48790 1.56899 1.65432 1.86237 2.35154 2.36366 2.58799 3.36217 3.43441 3.47211 3.71833 3.73574 3.80528 3.86915 4.11455 4.20045 4.20796 4.26296 4.30289 4.36002 4.41660 4.49606 4.53611 4.55314 4.58549 4.63071 4.64763 4.78421 4.81356 4.84191 4.90082 4.90331 5.08416 5.10986 5.17001 5.22147 5.29635 5.30429 5.42252 5.48890 5.51316 5.55467 5.61618 5.64428 5.74498 5.88244 6.03085 6.33004 6.35126 6.45165 7.05360 7.40530 8.16750 8.41788 9.33606 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.002525 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.344286 B =11085.869430 C =11470.185880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.192 4.192 3 C 0.129 3.871 4 N -0.413 5.413 5 C 0.027 3.973 6 C -0.221 4.221 7 C -0.149 4.149 8 C -0.083 4.083 9 C 0.594 3.406 10 O -0.589 6.589 11 N -0.604 5.604 12 C 0.103 3.897 13 C -0.085 4.085 14 H 0.094 0.906 15 C -0.100 4.100 16 C -0.108 4.108 17 C -0.128 4.128 18 C 0.187 3.813 19 H 0.033 0.967 20 N -0.726 5.726 21 C -0.231 4.231 22 H 0.070 0.930 23 C -0.072 4.072 24 N -0.966 5.966 25 Si 0.963 3.037 26 H -0.290 1.290 27 H -0.298 1.298 28 H -0.274 1.274 29 C -0.088 4.088 30 H 0.061 0.939 31 C 0.127 3.873 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.202 0.798 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.069 0.931 48 H 0.376 0.624 49 H 0.249 0.751 50 H 0.064 0.936 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.707 19.434 0.201 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.211 4.211 3 C 0.009 3.991 4 N -0.086 5.086 5 C -0.108 4.108 6 C -0.244 4.244 7 C -0.175 4.175 8 C -0.196 4.196 9 C 0.386 3.614 10 O -0.472 6.472 11 N -0.336 5.336 12 C -0.019 4.019 13 C -0.104 4.104 14 H 0.112 0.888 15 C -0.138 4.138 16 C -0.146 4.146 17 C -0.168 4.168 18 C 0.079 3.921 19 H 0.051 0.949 20 N -0.366 5.366 21 C -0.363 4.363 22 H 0.088 0.912 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.793 3.207 26 H -0.217 1.217 27 H -0.225 1.225 28 H -0.200 1.200 29 C -0.108 4.108 30 H 0.080 0.920 31 C 0.004 3.996 32 H 0.128 0.872 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.107 0.893 37 H 0.219 0.781 38 H 0.183 0.817 39 H 0.183 0.817 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.088 0.912 48 H 0.209 0.791 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.166 19.260 -0.871 27.185 hybrid contribution 0.946 -1.519 -0.060 1.791 sum -18.219 17.741 -0.931 25.447 Atomic orbital electron populations 1.24149 0.94482 1.03896 0.95900 1.22913 0.96820 0.97423 1.03945 1.21180 0.93536 0.97592 0.86822 1.44171 1.11345 1.40597 1.12481 1.22675 1.02182 1.01591 0.84380 1.21220 0.94308 1.07281 1.01588 1.22266 1.01779 1.01641 0.91862 1.19894 0.89809 1.12535 0.97324 1.16963 0.79728 0.78261 0.86432 1.90745 1.68677 1.63374 1.24395 1.48263 1.18786 1.49652 1.16850 1.22958 0.91990 1.01550 0.85408 1.22234 0.94350 0.95056 0.98754 0.88753 1.21478 0.94836 0.96836 1.00622 1.21315 0.97582 0.97988 0.97714 1.22080 0.99239 0.97773 0.97717 1.19656 0.90169 0.90672 0.91631 0.94899 1.42491 1.57571 1.31254 1.05327 1.19542 1.20824 1.03645 0.92299 0.91224 1.25386 1.03127 1.02341 0.95627 1.69788 1.48737 1.41739 1.01422 0.85286 0.78827 0.79555 0.76982 1.21690 1.22464 1.19954 1.21632 0.96050 0.96702 0.96379 0.92023 1.22154 0.92876 0.92297 0.92283 0.87237 0.85526 0.90144 0.85543 0.89324 0.78078 0.81737 0.81708 0.89994 0.88382 0.90298 0.91606 0.93612 0.91858 0.94087 0.91239 0.79128 0.94221 0.91754 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 14.32 67.78 0.97 -0.91 16 2 C -0.19 -3.72 9.85 25.65 0.25 -3.46 16 3 C 0.13 2.38 5.93 85.63 0.51 2.89 16 4 N -0.41 -8.69 2.74 -515.07 -1.41 -10.11 16 5 C 0.03 0.42 11.37 83.48 0.95 1.37 16 6 C -0.22 -3.69 10.81 22.01 0.24 -3.45 16 7 C -0.15 -3.12 9.34 22.57 0.21 -2.91 16 8 C -0.08 -2.13 6.86 40.35 0.28 -1.85 16 9 C 0.59 18.02 7.81 86.45 0.68 18.69 16 10 O -0.59 -20.98 15.07 -4.36 -0.07 -21.05 16 11 N -0.60 -16.65 3.34 -813.50 -2.72 -19.37 16 12 C 0.10 2.31 4.27 87.05 0.37 2.68 16 13 C -0.09 -2.28 3.27 -9.58 -0.03 -2.31 16 14 H 0.09 2.73 7.93 -2.39 -0.02 2.71 16 15 C -0.10 -2.49 4.60 30.46 0.14 -2.35 16 16 C -0.11 -3.36 5.85 30.56 0.18 -3.19 16 17 C -0.13 -4.32 5.42 30.64 0.17 -4.15 16 18 C 0.19 7.11 2.53 44.23 0.11 7.22 16 19 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 20 N -0.73 -34.79 4.17 -326.55 -1.36 -36.15 16 21 C -0.23 -12.53 9.90 84.04 0.83 -11.70 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 24 N -0.97 -57.79 13.06 21.65 0.28 -57.51 16 25 Si 0.96 46.10 29.55 68.60 2.03 48.13 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 28 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 29 C -0.09 -2.79 2.42 -10.72 -0.03 -2.81 16 30 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 31 C 0.13 3.70 5.79 86.50 0.50 4.21 16 32 H 0.11 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.13 0.92 7.83 -2.91 -0.02 0.89 16 34 H 0.08 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.13 1.33 7.77 -2.39 -0.02 1.31 16 36 H 0.09 2.11 6.49 -2.39 -0.02 2.09 16 37 H 0.20 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.17 2.94 4.42 -2.91 -0.01 2.93 16 40 H 0.08 1.74 6.89 -2.39 -0.02 1.73 16 41 H 0.10 1.81 6.62 -2.39 -0.02 1.79 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 1.54 6.93 -2.38 -0.02 1.52 16 44 H 0.05 1.75 7.38 -2.39 -0.02 1.74 16 45 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.07 2.00 6.69 -2.39 -0.02 1.98 16 48 H 0.38 19.14 7.22 -92.71 -0.67 18.47 16 49 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 50 H 0.06 2.04 8.10 -2.39 -0.02 2.02 16 51 H 0.08 2.27 5.78 -2.39 -0.01 2.26 16 Total: -1.00 -70.14 394.15 3.80 -66.33 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.26 Total: 35.39 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 6.79 Total: -5.67 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -5.21 Total: -123.14 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.07 Total: -21.05 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.14 3.80 -66.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992709699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.172 kcal (2) G-P(sol) polarization free energy of solvation -70.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds