Wall clock time and date at job start Wed Apr 1 2020 03:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.70356 * 2 1 4 4 C 1.53196 * 109.58548 * 239.64879 * 2 1 3 5 5 H 1.08999 * 109.49406 * 65.62251 * 4 2 1 6 6 N 1.46499 * 109.49862 * 305.56154 * 4 2 1 7 7 C 1.34777 * 120.00428 * 155.00035 * 6 4 2 8 8 O 1.21520 * 119.99680 * 359.97438 * 7 6 4 9 9 C 1.48171 * 120.00385 * 180.02562 * 7 6 4 10 10 C 1.39170 * 119.81880 * 180.02562 * 9 7 6 11 11 C 1.39006 * 119.24847 * 179.90330 * 10 9 7 12 12 C 1.37864 * 118.56127 * 359.94542 * 11 10 9 13 13 C 1.39127 * 119.06624 * 0.19252 * 12 11 10 14 14 N 1.31314 * 121.20131 * 359.52545 * 13 12 11 15 15 C 1.50497 * 122.48922 * 180.34618 * 12 11 10 16 16 C 1.52800 * 110.47843 * 342.27985 * 15 12 11 17 17 C 1.53310 * 108.50393 * 51.11844 * 16 15 12 18 18 C 1.50353 * 118.61547 * 179.74358 * 11 10 9 19 19 C 1.53032 * 109.34015 * 185.59121 * 4 2 1 20 20 C 1.53043 * 109.53946 * 61.31701 * 19 4 2 21 21 C 1.53191 * 109.34037 * 298.68452 * 20 19 4 22 22 N 1.46924 * 109.58789 * 120.36232 * 2 1 3 23 23 C 1.36935 * 120.62961 * 353.36978 * 22 2 1 24 24 H 1.07999 * 120.00338 * 29.03178 * 23 22 2 25 25 C 1.38813 * 120.00181 * 209.02540 * 23 22 2 26 26 N 1.31618 * 119.99784 * 15.03407 * 25 23 22 27 27 Si 1.86798 * 120.00239 * 195.02940 * 25 23 22 28 28 H 1.48495 * 109.47216 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46727 * 120.00490 * 27 25 23 30 30 H 1.48501 * 109.46989 * 240.00226 * 27 25 23 31 31 H 1.09003 * 109.47030 * 299.63728 * 1 2 3 32 32 H 1.08996 * 109.47571 * 59.64209 * 1 2 3 33 33 H 1.09011 * 109.47277 * 179.64377 * 1 2 3 34 34 H 0.97009 * 120.00050 * 334.99786 * 6 4 2 35 35 H 1.07996 * 120.37958 * 359.87943 * 10 9 7 36 36 H 1.08003 * 119.39520 * 179.80655 * 13 12 11 37 37 H 1.08994 * 109.30421 * 221.97153 * 15 12 11 38 38 H 1.09000 * 109.29944 * 102.58827 * 15 12 11 39 39 H 1.08999 * 109.62898 * 291.41269 * 16 15 12 40 40 H 1.08995 * 109.62768 * 170.82121 * 16 15 12 41 41 H 1.08995 * 109.63831 * 170.47306 * 17 16 15 42 42 H 1.09004 * 109.64173 * 49.84986 * 17 16 15 43 43 H 1.08996 * 109.30921 * 283.02899 * 18 11 10 44 44 H 1.09004 * 109.29936 * 42.62198 * 18 11 10 45 45 H 1.08999 * 109.43397 * 301.31576 * 19 4 2 46 46 H 1.09000 * 109.49107 * 181.35054 * 19 4 2 47 47 H 1.09000 * 109.49990 * 178.71389 * 20 19 4 48 48 H 1.09006 * 109.49582 * 58.65118 * 20 19 4 49 49 H 1.09004 * 109.58686 * 174.40333 * 21 20 19 50 50 H 1.08999 * 109.58584 * 294.83340 * 21 20 19 51 51 H 0.97006 * 120.00403 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 1 1.7659 -0.1667 -2.1368 6 7 1.4508 -2.0676 -1.3077 7 6 1.3277 -2.6957 -2.4938 8 8 1.7081 -2.1518 -3.5117 9 6 0.7277 -4.0490 -2.5568 10 6 0.6030 -4.6944 -3.7835 11 6 0.0402 -5.9646 -3.8287 12 6 -0.3759 -6.5435 -2.6486 13 6 -0.2227 -5.8384 -1.4591 14 7 0.3171 -4.6415 -1.4424 15 6 -0.9896 -7.9165 -2.5942 16 6 -1.4693 -8.3431 -3.9808 17 6 -0.3194 -8.1460 -4.9754 18 6 -0.0930 -6.6462 -5.1622 19 6 3.5673 -0.8486 -1.1708 20 6 3.9569 -1.6657 0.0632 21 6 3.4651 -0.9471 1.3236 22 7 2.0225 -0.6997 1.1944 23 6 1.1538 -1.1129 2.1688 24 1 0.1359 -1.3672 1.9124 25 6 1.5812 -1.2049 3.4863 26 7 2.7045 -0.6267 3.8556 27 14 0.5623 -2.1492 4.7351 28 1 -0.6461 -2.7014 4.0720 29 1 1.3716 -3.2617 5.2944 30 1 0.1520 -1.2356 5.8315 31 1 -0.3633 0.5082 0.8932 32 1 -0.3634 0.5193 -0.8867 33 1 -0.3634 -1.0277 -0.0064 34 1 1.1468 -2.5017 -0.4952 35 1 0.9393 -4.2136 -4.6902 36 1 -0.5497 -6.2855 -0.5319 37 1 -1.8360 -7.9059 -1.9076 38 1 -0.2470 -8.6290 -2.2348 39 1 -2.3201 -7.7302 -4.2784 40 1 -1.7600 -9.3934 -3.9606 41 1 -0.5806 -8.5990 -5.9317 42 1 0.5872 -8.6074 -4.5835 43 1 -0.9376 -6.2189 -5.7026 44 1 0.8192 -6.4915 -5.7385 45 1 4.0060 0.1468 -1.1004 46 1 3.9376 -1.3459 -2.0672 47 1 5.0412 -1.7696 0.1034 48 1 3.4987 -2.6531 0.0052 49 1 3.6519 -1.5720 2.1969 50 1 3.9903 0.0019 1.4315 51 1 3.0031 -0.6907 4.7763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993560767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:04 Heat of formation + Delta-G solvation = 0.269836 kcal Electronic energy + Delta-G solvation = -31018.190826 eV Core-core repulsion = 27109.811799 eV Total energy + Delta-G solvation = -3908.379027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.95686 -39.46462 -37.64391 -36.82949 -33.92911 -33.00010 -32.40888 -31.80709 -31.20128 -29.82067 -29.10316 -26.29430 -25.02610 -24.61300 -24.06258 -22.87980 -22.10489 -21.09648 -20.65626 -19.51596 -18.65053 -17.72255 -16.70720 -16.29562 -15.85821 -15.43373 -15.23821 -14.97125 -14.77390 -14.67054 -14.23973 -14.02871 -13.92224 -13.76960 -13.41412 -13.15506 -13.05670 -12.91722 -12.83953 -12.52957 -12.44361 -12.23713 -11.80422 -11.29883 -11.28458 -11.22736 -11.18809 -10.94301 -10.90506 -10.65964 -10.58116 -10.45419 -10.06766 -9.98216 -9.93709 -9.60288 -9.55667 -9.34850 -9.24990 -9.01078 -8.49196 -8.37892 -6.63441 -5.76363 -3.20994 0.66250 1.13986 2.93610 3.37878 3.46198 3.47838 3.51090 3.93470 4.19945 4.32723 4.35715 4.49831 4.50911 4.63242 4.69747 4.98585 5.03610 5.13655 5.15025 5.32364 5.34598 5.37232 5.43056 5.47296 5.58551 5.60125 5.61801 5.66015 5.67505 5.76085 5.79161 5.91107 5.94026 6.00985 6.14778 6.18153 6.27095 6.36391 6.46073 6.55486 6.56918 6.72347 6.73793 6.82589 6.97975 7.02439 7.13924 7.43802 7.71610 7.73976 7.83963 8.14561 8.46751 8.63400 9.23009 9.85859 10.42521 11.31653 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.003311 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.040148 B = 8453.599913 C = 9891.108858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 H 0.041 0.959 4 C 0.130 3.870 5 H 0.077 0.923 6 N -0.676 5.676 7 C 0.563 3.437 8 O -0.552 6.552 9 C 0.080 3.920 10 C -0.115 4.115 11 C -0.046 4.046 12 C -0.114 4.114 13 C 0.103 3.897 14 N -0.450 5.450 15 C -0.079 4.079 16 C -0.121 4.121 17 C -0.120 4.120 18 C -0.083 4.083 19 C -0.120 4.120 20 C -0.141 4.141 21 C 0.171 3.829 22 N -0.586 5.586 23 C -0.250 4.250 24 H 0.071 0.929 25 C 0.004 3.996 26 N -0.902 5.902 27 Si 0.899 3.101 28 H -0.277 1.277 29 H -0.290 1.290 30 H -0.292 1.292 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.420 0.580 35 H 0.145 0.855 36 H 0.161 0.839 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.053 0.947 49 H 0.088 0.912 50 H 0.018 0.982 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 -13.857 -15.875 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.053 3.947 3 H 0.058 0.942 4 C 0.024 3.976 5 H 0.095 0.905 6 N -0.326 5.326 7 C 0.347 3.653 8 O -0.431 6.431 9 C -0.056 4.056 10 C -0.135 4.135 11 C -0.054 4.054 12 C -0.117 4.117 13 C -0.058 4.058 14 N -0.161 5.161 15 C -0.116 4.116 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.120 4.120 19 C -0.159 4.159 20 C -0.181 4.181 21 C 0.046 3.954 22 N -0.309 5.309 23 C -0.379 4.379 24 H 0.089 0.911 25 C -0.195 4.195 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.202 1.202 29 H -0.217 1.217 30 H -0.219 1.219 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.259 0.741 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.106 0.894 50 H 0.036 0.964 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.585 -12.926 -15.593 21.010 hybrid contribution -0.553 -1.050 0.447 1.268 sum -6.138 -13.976 -15.146 21.503 Atomic orbital electron populations 1.21799 0.95626 1.01600 1.00435 1.20713 0.93387 0.93872 0.86754 0.94192 1.21632 0.93047 0.82914 0.99989 0.90516 1.45909 1.59349 1.18066 1.09307 1.17884 0.79053 0.84077 0.84312 1.90725 1.51300 1.66415 1.34689 1.21252 0.99104 0.95716 0.89578 1.22091 0.97994 0.94289 0.99174 1.19831 0.96210 0.93853 0.95463 1.20740 0.99586 0.97721 0.93627 1.22871 0.95359 0.90077 0.97537 1.67593 1.08070 1.10450 1.29961 1.20433 1.00457 0.92403 0.98326 1.21570 0.98262 1.01529 0.94464 1.21580 0.99136 0.95341 0.99735 1.20483 1.03057 0.95277 0.93134 1.21768 0.95324 1.00502 0.98299 1.22155 0.98886 0.99691 0.97325 1.20814 0.83105 0.97142 0.94362 1.44163 1.03150 1.64824 1.18775 1.19213 0.94803 1.37664 0.86245 0.91111 1.25072 0.97743 0.99683 0.96953 1.70030 1.23305 1.44599 1.16714 0.86265 0.79735 0.79516 0.81527 1.20186 1.21696 1.21895 0.91712 0.94251 0.92635 0.74140 0.83717 0.82230 0.90093 0.90061 0.91473 0.91138 0.91121 0.91419 0.89930 0.90081 0.91815 0.93154 0.93498 0.92793 0.89384 0.96426 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.73 37.16 0.29 -2.32 16 2 C 0.16 3.28 3.20 -67.60 -0.22 3.06 16 3 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.13 2.45 2.32 -67.81 -0.16 2.29 16 5 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 6 N -0.68 -12.60 3.45 -54.53 -0.19 -12.79 16 7 C 0.56 10.27 7.78 -12.18 -0.09 10.18 16 8 O -0.55 -10.99 15.99 5.35 0.09 -10.90 16 9 C 0.08 1.29 6.75 -83.06 -0.56 0.73 16 10 C -0.11 -1.53 9.26 -38.95 -0.36 -1.89 16 11 C -0.05 -0.50 5.74 -104.64 -0.60 -1.10 16 12 C -0.11 -1.19 5.75 -104.53 -0.60 -1.79 16 13 C 0.10 1.28 10.79 -17.44 -0.19 1.09 16 14 N -0.45 -7.07 9.55 -9.73 -0.09 -7.16 16 15 C -0.08 -0.56 5.71 -28.08 -0.16 -0.72 16 16 C -0.12 -0.73 5.97 -26.67 -0.16 -0.89 16 17 C -0.12 -0.74 5.98 -26.66 -0.16 -0.90 16 18 C -0.08 -0.64 5.71 -28.14 -0.16 -0.80 16 19 C -0.12 -2.23 5.58 -26.69 -0.15 -2.38 16 20 C -0.14 -2.81 5.93 -26.61 -0.16 -2.97 16 21 C 0.17 4.03 5.29 -3.71 -0.02 4.01 16 22 N -0.59 -13.90 2.65 -164.77 -0.44 -14.33 16 23 C -0.25 -6.46 8.60 -15.06 -0.13 -6.59 16 24 H 0.07 1.80 6.21 -52.49 -0.33 1.47 16 25 C 0.00 0.11 4.96 -17.43 -0.09 0.02 16 26 N -0.90 -25.61 11.14 55.49 0.62 -24.99 16 27 Si 0.90 21.31 29.58 -169.99 -5.03 16.29 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 31 H 0.06 1.30 7.62 -51.93 -0.40 0.91 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.08 6.40 -51.92 -0.33 0.74 16 34 H 0.42 8.35 7.11 -40.82 -0.29 8.06 16 35 H 0.15 1.85 7.64 -52.49 -0.40 1.45 16 36 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.05 1.12 7.53 -51.93 -0.39 0.73 16 49 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -30.16 393.11 -11.11 -41.26 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -8.32 Total: 7.66 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -3.67 Total: -0.97 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.10 Total: -59.27 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.16 -11.11 -41.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993560767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.534 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds