Wall clock time and date at job start Wed Apr 1 2020 03:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.70356 * 2 1 4 4 C 1.53196 * 109.58548 * 239.64879 * 2 1 3 5 5 H 1.08999 * 109.49406 * 65.62251 * 4 2 1 6 6 N 1.46499 * 109.49862 * 305.56154 * 4 2 1 7 7 C 1.34777 * 120.00428 * 155.00035 * 6 4 2 8 8 O 1.21520 * 119.99680 * 359.97438 * 7 6 4 9 9 C 1.48171 * 120.00385 * 180.02562 * 7 6 4 10 10 C 1.39170 * 119.81880 * 180.02562 * 9 7 6 11 11 C 1.39006 * 119.24847 * 179.90330 * 10 9 7 12 12 C 1.37864 * 118.56127 * 359.94542 * 11 10 9 13 13 C 1.39127 * 119.06624 * 0.19252 * 12 11 10 14 14 N 1.31314 * 121.20131 * 359.52545 * 13 12 11 15 15 C 1.50497 * 122.48922 * 180.34618 * 12 11 10 16 16 C 1.52800 * 110.47843 * 342.27985 * 15 12 11 17 17 C 1.53310 * 108.50393 * 51.11844 * 16 15 12 18 18 C 1.50353 * 118.61547 * 179.74358 * 11 10 9 19 19 C 1.53032 * 109.34015 * 185.59121 * 4 2 1 20 20 C 1.53043 * 109.53946 * 61.31701 * 19 4 2 21 21 C 1.53191 * 109.34037 * 298.68452 * 20 19 4 22 22 N 1.46924 * 109.58789 * 120.36232 * 2 1 3 23 23 C 1.36935 * 120.62961 * 353.36978 * 22 2 1 24 24 H 1.07999 * 120.00338 * 29.03178 * 23 22 2 25 25 C 1.38813 * 120.00181 * 209.02540 * 23 22 2 26 26 N 1.31618 * 119.99784 * 15.03407 * 25 23 22 27 27 Si 1.86798 * 120.00239 * 195.02940 * 25 23 22 28 28 H 1.48495 * 109.47216 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46727 * 120.00490 * 27 25 23 30 30 H 1.48501 * 109.46989 * 240.00226 * 27 25 23 31 31 H 1.09003 * 109.47030 * 299.63728 * 1 2 3 32 32 H 1.08996 * 109.47571 * 59.64209 * 1 2 3 33 33 H 1.09011 * 109.47277 * 179.64377 * 1 2 3 34 34 H 0.97009 * 120.00050 * 334.99786 * 6 4 2 35 35 H 1.07996 * 120.37958 * 359.87943 * 10 9 7 36 36 H 1.08003 * 119.39520 * 179.80655 * 13 12 11 37 37 H 1.08994 * 109.30421 * 221.97153 * 15 12 11 38 38 H 1.09000 * 109.29944 * 102.58827 * 15 12 11 39 39 H 1.08999 * 109.62898 * 291.41269 * 16 15 12 40 40 H 1.08995 * 109.62768 * 170.82121 * 16 15 12 41 41 H 1.08995 * 109.63831 * 170.47306 * 17 16 15 42 42 H 1.09004 * 109.64173 * 49.84986 * 17 16 15 43 43 H 1.08996 * 109.30921 * 283.02899 * 18 11 10 44 44 H 1.09004 * 109.29936 * 42.62198 * 18 11 10 45 45 H 1.08999 * 109.43397 * 301.31576 * 19 4 2 46 46 H 1.09000 * 109.49107 * 181.35054 * 19 4 2 47 47 H 1.09000 * 109.49990 * 178.71389 * 20 19 4 48 48 H 1.09006 * 109.49582 * 58.65118 * 20 19 4 49 49 H 1.09004 * 109.58686 * 174.40333 * 21 20 19 50 50 H 1.08999 * 109.58584 * 294.83340 * 21 20 19 51 51 H 0.97006 * 120.00403 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 1 1.7659 -0.1667 -2.1368 6 7 1.4508 -2.0676 -1.3077 7 6 1.3277 -2.6957 -2.4938 8 8 1.7081 -2.1518 -3.5117 9 6 0.7277 -4.0490 -2.5568 10 6 0.6030 -4.6944 -3.7835 11 6 0.0402 -5.9646 -3.8287 12 6 -0.3759 -6.5435 -2.6486 13 6 -0.2227 -5.8384 -1.4591 14 7 0.3171 -4.6415 -1.4424 15 6 -0.9896 -7.9165 -2.5942 16 6 -1.4693 -8.3431 -3.9808 17 6 -0.3194 -8.1460 -4.9754 18 6 -0.0930 -6.6462 -5.1622 19 6 3.5673 -0.8486 -1.1708 20 6 3.9569 -1.6657 0.0632 21 6 3.4651 -0.9471 1.3236 22 7 2.0225 -0.6997 1.1944 23 6 1.1538 -1.1129 2.1688 24 1 0.1359 -1.3672 1.9124 25 6 1.5812 -1.2049 3.4863 26 7 2.7045 -0.6267 3.8556 27 14 0.5623 -2.1492 4.7351 28 1 -0.6461 -2.7014 4.0720 29 1 1.3716 -3.2617 5.2944 30 1 0.1520 -1.2356 5.8315 31 1 -0.3633 0.5082 0.8932 32 1 -0.3634 0.5193 -0.8867 33 1 -0.3634 -1.0277 -0.0064 34 1 1.1468 -2.5017 -0.4952 35 1 0.9393 -4.2136 -4.6902 36 1 -0.5497 -6.2855 -0.5319 37 1 -1.8360 -7.9059 -1.9076 38 1 -0.2470 -8.6290 -2.2348 39 1 -2.3201 -7.7302 -4.2784 40 1 -1.7600 -9.3934 -3.9606 41 1 -0.5806 -8.5990 -5.9317 42 1 0.5872 -8.6074 -4.5835 43 1 -0.9376 -6.2189 -5.7026 44 1 0.8192 -6.4915 -5.7385 45 1 4.0060 0.1468 -1.1004 46 1 3.9376 -1.3459 -2.0672 47 1 5.0412 -1.7696 0.1034 48 1 3.4987 -2.6531 0.0052 49 1 3.6519 -1.5720 2.1969 50 1 3.9903 0.0019 1.4315 51 1 3.0031 -0.6907 4.7763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993560767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:03 Heat of formation + Delta-G solvation = -15.472903 kcal Electronic energy + Delta-G solvation = -31018.873483 eV Core-core repulsion = 27109.811799 eV Total energy + Delta-G solvation = -3909.061684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.97277 -40.84593 -39.14521 -37.68878 -35.65348 -34.05690 -33.83151 -33.44249 -32.24248 -31.13782 -30.31373 -27.94417 -26.87388 -25.60235 -24.91481 -23.75397 -23.63244 -22.46746 -22.17100 -20.48276 -20.24529 -18.86988 -18.31084 -17.61464 -17.11064 -16.66456 -16.45259 -16.33118 -16.13195 -15.72102 -15.62129 -15.27019 -15.16878 -14.83345 -14.74666 -14.53350 -14.42801 -14.23066 -14.00026 -13.63892 -13.51269 -13.24415 -13.01253 -12.95389 -12.88905 -12.74428 -12.45009 -12.32111 -12.20598 -11.90642 -11.85854 -11.75618 -11.69960 -11.47613 -11.39456 -11.25731 -11.05146 -10.50024 -10.45988 -10.39207 -10.07530 -9.79699 -8.60867 -7.80645 -5.26688 -0.37151 0.20743 1.47897 1.50913 1.60130 1.70959 2.18567 2.54571 2.82672 3.18740 3.35343 3.57298 3.58817 3.64846 3.82223 3.87777 3.96919 4.04445 4.05078 4.10356 4.18750 4.34968 4.37119 4.43717 4.54741 4.59727 4.63303 4.64484 4.71454 4.75973 4.80337 4.91974 4.93865 4.96888 5.00910 5.03756 5.05465 5.10207 5.19398 5.23799 5.27426 5.32127 5.38186 5.43670 5.46641 5.54663 5.60655 5.68824 5.74654 5.79722 6.45277 6.52247 6.85640 7.18775 7.21608 7.90046 8.42831 9.26020 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.003311 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.040148 B = 8453.599913 C = 9891.108858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.038 0.962 4 C 0.138 3.862 5 H 0.084 0.916 6 N -0.678 5.678 7 C 0.563 3.437 8 O -0.575 6.575 9 C 0.048 3.952 10 C -0.116 4.116 11 C -0.046 4.046 12 C -0.100 4.100 13 C 0.091 3.909 14 N -0.481 5.481 15 C -0.080 4.080 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.083 4.083 19 C -0.114 4.114 20 C -0.127 4.127 21 C 0.180 3.820 22 N -0.596 5.596 23 C -0.243 4.243 24 H 0.075 0.925 25 C -0.050 4.050 26 N -0.936 5.936 27 Si 0.959 3.041 28 H -0.265 1.265 29 H -0.295 1.295 30 H -0.297 1.297 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.414 0.586 35 H 0.145 0.855 36 H 0.181 0.819 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.056 0.944 50 H -0.001 1.001 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 -16.265 -17.698 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 H 0.056 0.944 4 C 0.031 3.969 5 H 0.102 0.898 6 N -0.327 5.327 7 C 0.349 3.651 8 O -0.455 6.455 9 C -0.087 4.087 10 C -0.138 4.138 11 C -0.054 4.054 12 C -0.102 4.102 13 C -0.071 4.071 14 N -0.192 5.192 15 C -0.117 4.117 16 C -0.157 4.157 17 C -0.156 4.156 18 C -0.120 4.120 19 C -0.153 4.153 20 C -0.166 4.166 21 C 0.054 3.946 22 N -0.320 5.320 23 C -0.374 4.374 24 H 0.093 0.907 25 C -0.245 4.245 26 N -0.582 5.582 27 Si 0.788 3.212 28 H -0.189 1.189 29 H -0.222 1.222 30 H -0.225 1.225 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.251 0.749 35 H 0.163 0.837 36 H 0.198 0.802 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.074 0.926 50 H 0.017 0.983 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.129 -15.336 -17.451 24.302 hybrid contribution -0.120 -0.362 0.942 1.016 sum -7.249 -15.698 -16.509 23.907 Atomic orbital electron populations 1.21697 0.94438 1.01368 1.00995 1.20849 0.94404 0.93603 0.86066 0.94416 1.21479 0.93132 0.83201 0.99059 0.89798 1.45875 1.59640 1.17903 1.09320 1.18245 0.78405 0.84898 0.83601 1.90691 1.52382 1.67323 1.35136 1.20974 1.01658 0.95225 0.90846 1.22197 0.98076 0.95299 0.98178 1.20217 0.94973 0.92906 0.97272 1.21136 0.97653 0.98819 0.92617 1.23334 0.95046 0.89384 0.99322 1.67491 1.09317 1.12112 1.30276 1.20576 1.01062 0.90300 0.99744 1.21596 0.98004 1.02680 0.93392 1.21601 0.99205 0.93937 1.00830 1.20592 1.03796 0.96312 0.91290 1.21718 0.95257 1.00786 0.97496 1.21957 0.99704 0.98779 0.96145 1.20588 0.83269 0.95892 0.94858 1.44322 1.02995 1.65398 1.19302 1.19475 0.95077 1.36197 0.86612 0.90747 1.25738 0.98941 1.01084 0.98714 1.70177 1.25010 1.46468 1.16585 0.85326 0.78690 0.77954 0.79237 1.18908 1.22194 1.22463 0.93089 0.91652 0.93232 0.74880 0.83724 0.80247 0.88691 0.88795 0.91621 0.89204 0.89289 0.91599 0.88883 0.89534 0.90805 0.92633 0.91825 0.93768 0.92573 0.98269 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 7.73 71.98 0.56 -4.23 16 2 C 0.16 6.43 3.20 44.98 0.14 6.57 16 3 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 4 C 0.14 5.12 2.32 45.07 0.10 5.22 16 5 H 0.08 3.04 7.58 -2.39 -0.02 3.02 16 6 N -0.68 -25.38 3.45 -444.73 -1.53 -26.91 16 7 C 0.56 20.67 7.78 86.88 0.68 21.35 16 8 O -0.57 -22.88 15.99 -3.78 -0.06 -22.94 16 9 C 0.05 1.56 6.75 41.87 0.28 1.84 16 10 C -0.12 -3.05 9.26 22.68 0.21 -2.84 16 11 C -0.05 -0.91 5.74 -19.88 -0.11 -1.03 16 12 C -0.10 -1.86 5.75 -19.80 -0.11 -1.97 16 13 C 0.09 2.13 10.79 84.98 0.92 3.05 16 14 N -0.48 -15.04 9.55 -184.70 -1.76 -16.80 16 15 C -0.08 -0.86 5.71 29.72 0.17 -0.69 16 16 C -0.12 -0.98 5.97 30.63 0.18 -0.80 16 17 C -0.12 -1.04 5.98 30.64 0.18 -0.86 16 18 C -0.08 -1.06 5.71 29.68 0.17 -0.89 16 19 C -0.11 -4.16 5.58 30.62 0.17 -3.99 16 20 C -0.13 -5.06 5.93 30.67 0.18 -4.88 16 21 C 0.18 8.67 5.29 86.36 0.46 9.13 16 22 N -0.60 -28.76 2.65 -675.22 -1.79 -30.55 16 23 C -0.24 -12.75 8.60 84.03 0.72 -12.03 16 24 H 0.07 3.80 6.21 -2.91 -0.02 3.78 16 25 C -0.05 -2.72 4.96 84.86 0.42 -2.30 16 26 N -0.94 -54.72 11.14 21.65 0.24 -54.47 16 27 Si 0.96 44.53 29.58 68.60 2.03 46.56 16 28 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 30 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 31 H 0.05 2.03 7.62 -2.39 -0.02 2.01 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.91 6.40 -2.38 -0.02 1.89 16 34 H 0.41 16.67 7.11 -92.70 -0.66 16.01 16 35 H 0.14 3.67 7.64 -2.91 -0.02 3.65 16 36 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 37 H 0.09 0.82 8.13 -2.39 -0.02 0.80 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.59 8.10 -2.39 -0.02 0.57 16 40 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.07 0.63 8.10 -2.38 -0.02 0.61 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.04 1.85 7.53 -2.38 -0.02 1.83 16 49 H 0.06 3.08 6.06 -2.38 -0.01 3.06 16 50 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 51 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 Total: -1.00 -66.53 393.11 2.72 -63.82 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.27 Total: 30.65 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.32 Total: 10.66 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -4.84 Total: -128.74 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.06 Total: -22.94 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.53 2.72 -63.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993560767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.343 kcal (2) G-P(sol) polarization free energy of solvation -66.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds