Wall clock time and date at job start Wed Apr 1 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.58568 * 2 1 4 4 C 1.53188 * 109.58701 * 120.28577 * 2 1 3 5 5 H 1.08995 * 109.49731 * 294.54605 * 4 2 1 6 6 N 1.46505 * 109.50060 * 54.61218 * 4 2 1 7 7 C 1.34770 * 120.00263 * 204.94052 * 6 4 2 8 8 O 1.21600 * 119.99633 * 359.97438 * 7 6 4 9 9 C 1.47523 * 120.00132 * 180.02562 * 7 6 4 10 10 C 1.39811 * 120.21052 * 359.97438 * 9 7 6 11 11 C 1.37393 * 120.12059 * 180.11605 * 10 9 7 12 12 C 1.39756 * 120.39263 * 0.03334 * 11 10 9 13 13 C 1.39308 * 119.29960 * 359.67917 * 12 11 10 14 14 C 1.37430 * 120.64920 * 0.44815 * 13 12 11 15 15 C 1.51610 * 107.87830 * 180.81469 * 13 12 11 16 16 C 1.54604 * 102.73927 * 15.91886 * 15 13 12 17 17 N 1.39466 * 129.74279 * 179.62670 * 12 11 10 18 18 C 1.46899 * 110.99788 * 283.42554 * 17 12 11 19 19 C 1.53039 * 109.33788 * 174.57904 * 4 2 1 20 20 C 1.53103 * 109.50347 * 298.65168 * 19 4 2 21 21 C 1.53187 * 109.33276 * 61.34488 * 20 19 4 22 22 N 1.46924 * 109.70020 * 239.64493 * 2 1 3 23 23 C 1.36943 * 120.63605 * 6.51262 * 22 2 1 24 24 H 1.07994 * 119.99540 * 330.20492 * 23 22 2 25 25 C 1.38813 * 120.00077 * 150.19820 * 23 22 2 26 26 N 1.31613 * 119.99864 * 344.47167 * 25 23 22 27 27 Si 1.86798 * 119.99770 * 164.47590 * 25 23 22 28 28 H 1.48500 * 109.47212 * 359.97438 * 27 25 23 29 29 H 1.48490 * 109.47298 * 119.99822 * 27 25 23 30 30 H 1.48501 * 109.46761 * 240.00422 * 27 25 23 31 31 H 1.09005 * 109.46882 * 299.71430 * 1 2 3 32 32 H 1.08996 * 109.47033 * 59.71249 * 1 2 3 33 33 H 1.08994 * 109.46921 * 179.71245 * 1 2 3 34 34 H 0.96998 * 119.99447 * 24.93169 * 6 4 2 35 35 H 1.07996 * 119.94042 * 0.13173 * 10 9 7 36 36 H 1.08007 * 119.80027 * 180.02562 * 11 10 9 37 37 H 1.07991 * 120.01656 * 179.70152 * 14 13 12 38 38 H 1.09002 * 110.75737 * 134.23439 * 15 13 12 39 39 H 1.09006 * 110.75698 * 257.41859 * 15 13 12 40 40 H 1.09004 * 110.77196 * 216.16679 * 16 15 13 41 41 H 1.08994 * 110.77748 * 92.74717 * 16 15 13 42 42 H 1.08998 * 109.47394 * 59.87238 * 18 17 12 43 43 H 1.09004 * 109.47424 * 299.87575 * 18 17 12 44 44 H 1.09005 * 109.47038 * 179.87438 * 18 17 12 45 45 H 1.08999 * 109.45849 * 58.64447 * 19 4 2 46 46 H 1.09005 * 109.45833 * 178.59759 * 19 4 2 47 47 H 1.09001 * 109.48797 * 301.38084 * 20 19 4 48 48 H 1.09000 * 109.51564 * 181.31980 * 20 19 4 49 49 H 1.09002 * 109.58883 * 185.57821 * 21 20 19 50 50 H 1.08998 * 109.70565 * 65.21826 * 21 20 19 51 51 H 0.97001 * 119.99982 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.7634 -0.1658 2.1371 6 7 1.4541 -2.0676 1.3079 7 6 1.3321 -2.6963 2.4937 8 8 1.7118 -2.1517 3.5124 9 6 0.7390 -4.0457 2.5556 10 6 0.3015 -4.6761 1.3869 11 6 -0.2528 -5.9319 1.4470 12 6 -0.3847 -6.5885 2.6736 13 6 0.0580 -5.9592 3.8349 14 6 0.6111 -4.7022 3.7833 15 6 -0.1890 -6.9004 4.9975 16 6 -0.4296 -8.2558 4.2937 17 7 -0.9174 -7.8454 2.9594 18 6 -2.3856 -7.8158 2.9218 19 6 3.5679 -0.8434 1.1736 20 6 3.9603 -1.6608 -0.0600 21 6 3.4686 -0.9436 -1.3211 22 7 2.0254 -0.6990 -1.1936 23 6 1.1584 -1.1152 -2.1686 24 1 0.1447 -1.3839 -1.9109 25 6 1.5826 -1.1914 -3.4881 26 7 2.6923 -0.5883 -3.8585 27 14 0.5785 -2.1498 -4.7381 28 1 -0.6159 -2.7303 -4.0733 29 1 0.1452 -1.2392 -5.8280 30 1 1.4081 -3.2426 -5.3063 31 1 -0.3633 0.5094 0.8926 32 1 -0.3633 0.5183 -0.8874 33 1 -0.3633 -1.0276 -0.0052 34 1 1.1515 -2.5021 0.4951 35 1 0.3996 -4.1753 0.4352 36 1 -0.5887 -6.4143 0.5409 37 1 0.9466 -4.2219 4.6905 38 1 0.6858 -6.9516 5.6457 39 1 -1.0692 -6.5937 5.5626 40 1 -1.1870 -8.8360 4.8207 41 1 0.5003 -8.8181 4.2093 42 1 -2.7176 -7.5109 1.9294 43 1 -2.7538 -7.1055 3.6622 44 1 -2.7749 -8.8090 3.1460 45 1 4.0046 0.1528 1.1030 46 1 3.9377 -1.3389 2.0713 47 1 3.5037 -2.6489 -0.0019 48 1 5.0448 -1.7631 -0.0992 49 1 3.6576 -1.5684 -2.1941 50 1 3.9917 0.0063 -1.4314 51 1 2.9885 -0.6412 -4.7806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994162522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:12 Heat of formation + Delta-G solvation = 27.759831 kcal Electronic energy + Delta-G solvation = -31081.048536 eV Core-core repulsion = 27173.861564 eV Total energy + Delta-G solvation = -3907.186972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.05919 -39.71090 -37.76573 -36.42360 -33.97807 -32.70826 -32.36211 -31.72781 -30.35809 -29.49852 -28.82562 -26.45557 -26.11030 -25.03095 -23.78589 -22.45514 -21.84797 -21.19011 -20.77006 -19.98487 -18.72891 -17.51248 -16.74292 -16.48585 -16.08753 -15.64152 -15.40143 -14.93621 -14.76798 -14.31941 -14.18904 -13.98190 -13.75316 -13.54276 -13.48998 -13.18930 -13.14675 -12.99799 -12.78560 -12.57084 -12.45395 -12.31662 -11.98241 -11.84211 -11.48056 -11.27813 -11.23085 -11.00715 -11.00182 -10.72271 -10.63063 -10.51796 -10.12000 -10.02295 -9.68643 -9.65531 -9.57230 -9.30417 -8.96936 -8.57521 -8.47627 -8.09291 -6.69380 -5.83994 -3.29671 0.78848 1.28787 2.96115 3.32144 3.36070 3.40147 3.41731 3.59515 3.89425 4.30816 4.42560 4.51480 4.65484 4.80022 4.92576 5.04012 5.08044 5.16040 5.23601 5.28781 5.31012 5.32660 5.40435 5.49088 5.57697 5.59253 5.62055 5.66200 5.75404 5.90248 5.96474 6.10933 6.13740 6.17038 6.22092 6.29676 6.36935 6.42250 6.47566 6.53276 6.61394 6.67729 6.68218 6.77980 6.93574 6.95985 7.00598 7.11271 7.36878 7.64643 7.75590 8.02588 8.39561 8.61840 9.15512 9.78522 10.36215 11.23961 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012056 B = 0.003388 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.014038 B = 8263.494171 C = 9753.995662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.134 3.866 5 H 0.077 0.923 6 N -0.694 5.694 7 C 0.555 3.445 8 O -0.555 6.555 9 C -0.139 4.139 10 C -0.065 4.065 11 C -0.116 4.116 12 C 0.108 3.892 13 C -0.154 4.154 14 C -0.030 4.030 15 C -0.108 4.108 16 C 0.049 3.951 17 N -0.498 5.498 18 C 0.027 3.973 19 C -0.121 4.121 20 C -0.140 4.140 21 C 0.171 3.829 22 N -0.586 5.586 23 C -0.257 4.257 24 H 0.070 0.930 25 C 0.007 3.993 26 N -0.898 5.898 27 Si 0.898 3.102 28 H -0.277 1.277 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.408 0.592 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.047 0.953 49 H 0.085 0.915 50 H 0.018 0.982 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 -12.137 14.496 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.057 0.943 4 C 0.028 3.972 5 H 0.095 0.905 6 N -0.345 5.345 7 C 0.342 3.658 8 O -0.435 6.435 9 C -0.143 4.143 10 C -0.084 4.084 11 C -0.136 4.136 12 C 0.011 3.989 13 C -0.157 4.157 14 C -0.050 4.050 15 C -0.146 4.146 16 C -0.078 4.078 17 N -0.215 5.215 18 C -0.119 4.119 19 C -0.160 4.160 20 C -0.179 4.179 21 C 0.046 3.954 22 N -0.310 5.310 23 C -0.387 4.387 24 H 0.088 0.912 25 C -0.192 4.192 26 N -0.542 5.542 27 Si 0.728 3.272 28 H -0.202 1.202 29 H -0.218 1.218 30 H -0.216 1.216 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.245 0.755 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.103 0.897 50 H 0.036 0.964 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.091 -12.134 14.620 19.952 hybrid contribution -0.688 -0.138 -0.680 0.977 sum -6.779 -12.272 13.940 19.771 Atomic orbital electron populations 1.21782 0.95644 1.01433 1.00465 1.20724 0.93327 0.93961 0.86809 0.94256 1.21561 0.92972 0.82836 0.99847 0.90538 1.45932 1.61208 1.18498 1.08852 1.18090 0.78757 0.85031 0.83953 1.90726 1.51038 1.67319 1.34460 1.19940 1.04632 0.95707 0.94004 1.21243 0.94965 0.94134 0.98079 1.20413 1.02366 0.94914 0.95935 1.19703 0.96740 0.88666 0.93794 1.20871 1.04268 0.95300 0.95266 1.20400 0.94775 0.92218 0.97586 1.21658 1.02892 0.93695 0.96338 1.23196 1.01694 0.96314 0.86550 1.59927 1.08803 1.23817 1.28964 1.22491 0.85058 1.01871 1.02457 1.21782 0.95437 1.00468 0.98272 1.22148 0.98955 0.99565 0.97267 1.20790 0.83149 0.97195 0.94267 1.44171 1.03081 1.64904 1.18842 1.19180 0.95262 1.38070 0.86166 0.91190 1.25103 0.97770 0.99328 0.96990 1.70031 1.24029 1.43427 1.16702 0.86303 0.79613 0.79636 0.81667 1.20211 1.21778 1.21601 0.94166 0.91762 0.92851 0.75457 0.84481 0.85164 0.84924 0.89394 0.90110 0.89611 0.89110 0.90692 0.94665 0.90638 0.91890 0.93080 0.92856 0.93447 0.89659 0.96355 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.73 37.16 0.29 -2.15 16 2 C 0.16 3.11 3.19 -67.60 -0.22 2.89 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.13 2.40 2.32 -67.81 -0.16 2.24 16 5 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 6 N -0.69 -11.82 3.42 -54.74 -0.19 -12.01 16 7 C 0.55 9.53 7.73 -12.48 -0.10 9.43 16 8 O -0.56 -10.95 16.01 5.28 0.08 -10.87 16 9 C -0.14 -2.07 5.88 -104.94 -0.62 -2.68 16 10 C -0.06 -0.87 9.52 -39.30 -0.37 -1.25 16 11 C -0.12 -1.43 10.05 -39.32 -0.40 -1.83 16 12 C 0.11 1.29 5.57 -83.42 -0.46 0.82 16 13 C -0.15 -1.83 6.22 -104.07 -0.65 -2.48 16 14 C -0.03 -0.41 9.58 -39.29 -0.38 -0.79 16 15 C -0.11 -0.92 6.98 -26.59 -0.19 -1.11 16 16 C 0.05 0.38 7.00 -2.44 -0.02 0.37 16 17 N -0.50 -5.00 5.31 -176.83 -0.94 -5.94 16 18 C 0.03 0.21 9.28 60.06 0.56 0.77 16 19 C -0.12 -2.16 5.58 -26.66 -0.15 -2.31 16 20 C -0.14 -2.66 5.93 -26.58 -0.16 -2.82 16 21 C 0.17 3.87 5.28 -3.71 -0.02 3.85 16 22 N -0.59 -13.27 2.64 -164.77 -0.44 -13.70 16 23 C -0.26 -6.34 8.59 -15.06 -0.13 -6.46 16 24 H 0.07 1.67 6.24 -52.49 -0.33 1.34 16 25 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 26 N -0.90 -24.83 11.23 55.49 0.62 -24.20 16 27 Si 0.90 20.51 29.58 -169.99 -5.03 15.48 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.23 7.67 -51.93 -0.40 0.84 16 33 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 34 H 0.41 6.98 5.81 -40.82 -0.24 6.75 16 35 H 0.14 1.80 6.40 -52.49 -0.34 1.46 16 36 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 37 H 0.13 1.80 7.65 -52.49 -0.40 1.40 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.48 7.76 -51.93 -0.40 0.07 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.05 1.03 7.53 -51.93 -0.39 0.64 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.09 2.17 6.14 -51.93 -0.32 1.85 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -29.39 394.08 -11.35 -40.74 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.17 Total: 7.94 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.24 Total: -3.39 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.94 Total: -55.85 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.39 -11.35 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994162522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.504 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds