Wall clock time and date at job start Wed Apr 1 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.58568 * 2 1 4 4 C 1.53188 * 109.58701 * 120.28577 * 2 1 3 5 5 H 1.08995 * 109.49731 * 294.54605 * 4 2 1 6 6 N 1.46505 * 109.50060 * 54.61218 * 4 2 1 7 7 C 1.34770 * 120.00263 * 204.94052 * 6 4 2 8 8 O 1.21600 * 119.99633 * 359.97438 * 7 6 4 9 9 C 1.47523 * 120.00132 * 180.02562 * 7 6 4 10 10 C 1.39811 * 120.21052 * 359.97438 * 9 7 6 11 11 C 1.37393 * 120.12059 * 180.11605 * 10 9 7 12 12 C 1.39756 * 120.39263 * 0.03334 * 11 10 9 13 13 C 1.39308 * 119.29960 * 359.67917 * 12 11 10 14 14 C 1.37430 * 120.64920 * 0.44815 * 13 12 11 15 15 C 1.51610 * 107.87830 * 180.81469 * 13 12 11 16 16 C 1.54604 * 102.73927 * 15.91886 * 15 13 12 17 17 N 1.39466 * 129.74279 * 179.62670 * 12 11 10 18 18 C 1.46899 * 110.99788 * 283.42554 * 17 12 11 19 19 C 1.53039 * 109.33788 * 174.57904 * 4 2 1 20 20 C 1.53103 * 109.50347 * 298.65168 * 19 4 2 21 21 C 1.53187 * 109.33276 * 61.34488 * 20 19 4 22 22 N 1.46924 * 109.70020 * 239.64493 * 2 1 3 23 23 C 1.36943 * 120.63605 * 6.51262 * 22 2 1 24 24 H 1.07994 * 119.99540 * 330.20492 * 23 22 2 25 25 C 1.38813 * 120.00077 * 150.19820 * 23 22 2 26 26 N 1.31613 * 119.99864 * 344.47167 * 25 23 22 27 27 Si 1.86798 * 119.99770 * 164.47590 * 25 23 22 28 28 H 1.48500 * 109.47212 * 359.97438 * 27 25 23 29 29 H 1.48490 * 109.47298 * 119.99822 * 27 25 23 30 30 H 1.48501 * 109.46761 * 240.00422 * 27 25 23 31 31 H 1.09005 * 109.46882 * 299.71430 * 1 2 3 32 32 H 1.08996 * 109.47033 * 59.71249 * 1 2 3 33 33 H 1.08994 * 109.46921 * 179.71245 * 1 2 3 34 34 H 0.96998 * 119.99447 * 24.93169 * 6 4 2 35 35 H 1.07996 * 119.94042 * 0.13173 * 10 9 7 36 36 H 1.08007 * 119.80027 * 180.02562 * 11 10 9 37 37 H 1.07991 * 120.01656 * 179.70152 * 14 13 12 38 38 H 1.09002 * 110.75737 * 134.23439 * 15 13 12 39 39 H 1.09006 * 110.75698 * 257.41859 * 15 13 12 40 40 H 1.09004 * 110.77196 * 216.16679 * 16 15 13 41 41 H 1.08994 * 110.77748 * 92.74717 * 16 15 13 42 42 H 1.08998 * 109.47394 * 59.87238 * 18 17 12 43 43 H 1.09004 * 109.47424 * 299.87575 * 18 17 12 44 44 H 1.09005 * 109.47038 * 179.87438 * 18 17 12 45 45 H 1.08999 * 109.45849 * 58.64447 * 19 4 2 46 46 H 1.09005 * 109.45833 * 178.59759 * 19 4 2 47 47 H 1.09001 * 109.48797 * 301.38084 * 20 19 4 48 48 H 1.09000 * 109.51564 * 181.31980 * 20 19 4 49 49 H 1.09002 * 109.58883 * 185.57821 * 21 20 19 50 50 H 1.08998 * 109.70565 * 65.21826 * 21 20 19 51 51 H 0.97001 * 119.99982 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.7634 -0.1658 2.1371 6 7 1.4541 -2.0676 1.3079 7 6 1.3321 -2.6963 2.4937 8 8 1.7118 -2.1517 3.5124 9 6 0.7390 -4.0457 2.5556 10 6 0.3015 -4.6761 1.3869 11 6 -0.2528 -5.9319 1.4470 12 6 -0.3847 -6.5885 2.6736 13 6 0.0580 -5.9592 3.8349 14 6 0.6111 -4.7022 3.7833 15 6 -0.1890 -6.9004 4.9975 16 6 -0.4296 -8.2558 4.2937 17 7 -0.9174 -7.8454 2.9594 18 6 -2.3856 -7.8158 2.9218 19 6 3.5679 -0.8434 1.1736 20 6 3.9603 -1.6608 -0.0600 21 6 3.4686 -0.9436 -1.3211 22 7 2.0254 -0.6990 -1.1936 23 6 1.1584 -1.1152 -2.1686 24 1 0.1447 -1.3839 -1.9109 25 6 1.5826 -1.1914 -3.4881 26 7 2.6923 -0.5883 -3.8585 27 14 0.5785 -2.1498 -4.7381 28 1 -0.6159 -2.7303 -4.0733 29 1 0.1452 -1.2392 -5.8280 30 1 1.4081 -3.2426 -5.3063 31 1 -0.3633 0.5094 0.8926 32 1 -0.3633 0.5183 -0.8874 33 1 -0.3633 -1.0276 -0.0052 34 1 1.1515 -2.5021 0.4951 35 1 0.3996 -4.1753 0.4352 36 1 -0.5887 -6.4143 0.5409 37 1 0.9466 -4.2219 4.6905 38 1 0.6858 -6.9516 5.6457 39 1 -1.0692 -6.5937 5.5626 40 1 -1.1870 -8.8360 4.8207 41 1 0.5003 -8.8181 4.2093 42 1 -2.7176 -7.5109 1.9294 43 1 -2.7538 -7.1055 3.6622 44 1 -2.7749 -8.8090 3.1460 45 1 4.0046 0.1528 1.1030 46 1 3.9377 -1.3389 2.0713 47 1 3.5037 -2.6489 -0.0019 48 1 5.0448 -1.7631 -0.0992 49 1 3.6576 -1.5684 -2.1941 50 1 3.9917 0.0063 -1.4314 51 1 2.9885 -0.6412 -4.7806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994162522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:11 Heat of formation + Delta-G solvation = 12.133157 kcal Electronic energy + Delta-G solvation = -31081.726159 eV Core-core repulsion = 27173.861564 eV Total energy + Delta-G solvation = -3907.864595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.96666 -41.04283 -39.24263 -37.46322 -35.63358 -34.08013 -33.53584 -33.27080 -31.64964 -30.71289 -29.84860 -27.90474 -27.00923 -26.79802 -24.85187 -23.61123 -23.29495 -22.36466 -21.99688 -21.27562 -20.27652 -18.69577 -18.26792 -17.54395 -17.21711 -16.97301 -16.46622 -16.33883 -16.17583 -15.69739 -15.64553 -15.11862 -14.99230 -14.83998 -14.71826 -14.53151 -14.33096 -14.15244 -13.93374 -13.73493 -13.55143 -13.34690 -13.03801 -12.91889 -12.90663 -12.76410 -12.68353 -12.43716 -12.30567 -12.18096 -12.12413 -11.89808 -11.88451 -11.67451 -11.37399 -11.04029 -10.95354 -10.52044 -10.49421 -9.94567 -9.92191 -8.96867 -8.59556 -7.80437 -5.27316 -0.24781 0.31852 1.49565 1.53337 1.61141 1.80304 2.26172 2.55020 2.62355 2.79021 3.36298 3.52440 3.59552 3.74524 3.79512 3.98507 4.01413 4.06195 4.08027 4.19321 4.20770 4.26035 4.39576 4.45777 4.50112 4.57383 4.58107 4.66788 4.73274 4.76597 4.79814 4.93264 4.95044 4.97198 4.99410 5.02790 5.08231 5.12721 5.18974 5.22645 5.28682 5.32447 5.35507 5.45707 5.54519 5.56430 5.65052 5.76186 5.80935 5.87732 6.14841 6.45813 6.65565 7.20596 7.26412 7.90537 8.44541 9.26455 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012056 B = 0.003388 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.014038 B = 8263.494171 C = 9753.995662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.157 3.843 3 H 0.033 0.967 4 C 0.142 3.858 5 H 0.080 0.920 6 N -0.691 5.691 7 C 0.557 3.443 8 O -0.584 6.584 9 C -0.160 4.160 10 C -0.066 4.066 11 C -0.123 4.123 12 C 0.111 3.889 13 C -0.159 4.159 14 C -0.038 4.038 15 C -0.105 4.105 16 C 0.049 3.951 17 N -0.509 5.509 18 C 0.026 3.974 19 C -0.115 4.115 20 C -0.126 4.126 21 C 0.180 3.820 22 N -0.596 5.596 23 C -0.247 4.247 24 H 0.081 0.919 25 C -0.047 4.047 26 N -0.935 5.935 27 Si 0.956 3.044 28 H -0.260 1.260 29 H -0.301 1.301 30 H -0.296 1.296 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.408 0.592 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.061 0.939 49 H 0.055 0.945 50 H -0.004 1.004 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 -14.351 16.227 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 H 0.050 0.950 4 C 0.036 3.964 5 H 0.098 0.902 6 N -0.342 5.342 7 C 0.346 3.654 8 O -0.467 6.467 9 C -0.164 4.164 10 C -0.085 4.085 11 C -0.143 4.143 12 C 0.014 3.986 13 C -0.162 4.162 14 C -0.057 4.057 15 C -0.143 4.143 16 C -0.077 4.077 17 N -0.226 5.226 18 C -0.119 4.119 19 C -0.154 4.154 20 C -0.165 4.165 21 C 0.054 3.946 22 N -0.320 5.320 23 C -0.377 4.377 24 H 0.098 0.902 25 C -0.243 4.243 26 N -0.582 5.582 27 Si 0.786 3.214 28 H -0.184 1.184 29 H -0.228 1.228 30 H -0.223 1.223 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.116 0.884 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.014 0.986 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.818 -14.369 16.378 23.148 hybrid contribution -0.196 0.497 -1.142 1.260 sum -8.014 -13.872 15.237 22.109 Atomic orbital electron populations 1.21702 0.94223 1.01698 1.00915 1.20835 0.94510 0.93462 0.86130 0.94979 1.21369 0.92930 0.83301 0.98807 0.90172 1.45866 1.61191 1.18103 1.08994 1.18404 0.78057 0.85676 0.83254 1.90700 1.52469 1.68259 1.35266 1.19786 1.06526 0.94914 0.95141 1.21219 0.95135 0.94638 0.97517 1.20570 1.02238 0.94602 0.96889 1.19952 0.95792 0.89317 0.93578 1.21224 1.03213 0.94864 0.96911 1.20431 0.95255 0.93073 0.96955 1.21756 1.03948 0.93093 0.95476 1.23344 1.02747 0.96090 0.85501 1.59961 1.09982 1.22318 1.30356 1.22572 0.83632 1.03327 1.02400 1.21732 0.95508 1.00594 0.97555 1.21959 0.99715 0.98976 0.95854 1.20562 0.83363 0.95795 0.94840 1.44340 1.02895 1.65411 1.19340 1.19516 0.95664 1.36168 0.86360 0.90176 1.25768 0.98902 1.00794 0.98809 1.70182 1.25921 1.45575 1.16479 0.85369 0.78769 0.77965 0.79344 1.18380 1.22839 1.22346 0.91813 0.93213 0.92602 0.75448 0.84626 0.83875 0.85416 0.88303 0.88805 0.86812 0.88924 0.91080 0.94517 0.88360 0.91287 0.92749 0.93071 0.92019 0.92695 0.98615 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 7.73 71.98 0.56 -3.89 16 2 C 0.16 6.08 3.19 44.98 0.14 6.22 16 3 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.14 4.99 2.32 45.07 0.10 5.09 16 5 H 0.08 2.81 7.58 -2.39 -0.02 2.79 16 6 N -0.69 -23.12 3.42 -445.35 -1.52 -24.64 16 7 C 0.56 18.92 7.73 86.69 0.67 19.59 16 8 O -0.58 -22.88 16.01 -4.03 -0.06 -22.95 16 9 C -0.16 -4.67 5.88 -20.07 -0.12 -4.79 16 10 C -0.07 -1.72 9.52 22.45 0.21 -1.50 16 11 C -0.12 -2.85 10.05 22.44 0.23 -2.63 16 12 C 0.11 2.42 5.57 38.55 0.21 2.64 16 13 C -0.16 -3.49 6.22 -19.51 -0.12 -3.61 16 14 C -0.04 -0.99 9.58 22.46 0.22 -0.78 16 15 C -0.10 -1.49 6.98 30.68 0.21 -1.27 16 16 C 0.05 0.60 7.00 86.66 0.61 1.20 16 17 N -0.51 -8.73 5.31 -713.36 -3.79 -12.52 16 18 C 0.03 0.33 9.28 127.69 1.18 1.51 16 19 C -0.12 -4.04 5.58 30.64 0.17 -3.87 16 20 C -0.13 -4.75 5.93 30.69 0.18 -4.57 16 21 C 0.18 8.31 5.28 86.36 0.46 8.77 16 22 N -0.60 -27.15 2.64 -675.22 -1.78 -28.93 16 23 C -0.25 -12.16 8.59 84.03 0.72 -11.43 16 24 H 0.08 3.74 6.24 -2.91 -0.02 3.72 16 25 C -0.05 -2.48 4.94 84.86 0.42 -2.06 16 26 N -0.94 -53.22 11.23 21.65 0.24 -52.97 16 27 Si 0.96 42.55 29.58 68.60 2.03 44.58 16 28 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 29 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 30 H -0.30 -13.40 7.11 99.48 0.71 -12.70 16 31 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.05 1.86 7.67 -2.39 -0.02 1.84 16 33 H 0.05 1.90 6.39 -2.39 -0.02 1.88 16 34 H 0.41 13.73 5.81 -92.71 -0.54 13.19 16 35 H 0.14 3.49 6.40 -2.91 -0.02 3.47 16 36 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 37 H 0.13 3.43 7.65 -2.91 -0.02 3.41 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.11 0.76 7.76 -2.38 -0.02 0.74 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.10 0.81 8.10 -2.38 -0.02 0.79 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.05 1.95 7.53 -2.39 -0.02 1.93 16 48 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.05 2.88 6.14 -2.39 -0.01 2.87 16 50 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 51 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -63.65 394.08 1.57 -62.08 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.39 Total: 30.74 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 6.06 Total: 4.62 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -6.85 Total: -119.06 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.06 Total: -22.95 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -63.65 1.57 -62.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994162522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.210 kcal (2) G-P(sol) polarization free energy of solvation -63.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds