Wall clock time and date at job start Wed Apr 1 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49605 * 2 1 4 4 C 1.53190 * 109.49654 * 239.93704 * 2 1 3 5 5 N 1.46924 * 108.77623 * 185.41595 * 4 2 1 6 6 C 1.34781 * 120.63260 * 233.63161 * 5 4 2 7 7 O 1.21282 * 119.99623 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00016 * 180.02562 * 6 5 4 9 9 N 1.46908 * 109.46893 * 175.31938 * 8 6 5 10 10 C 1.47906 * 110.99862 * 76.04261 * 9 8 6 11 11 C 1.54595 * 102.63211 * 94.67858 * 10 9 8 12 12 C 1.51575 * 102.81704 * 25.59888 * 11 10 9 13 13 C 1.37913 * 131.56695 * 163.78205 * 12 11 10 14 14 C 1.38300 * 120.08579 * 180.27966 * 13 12 11 15 15 C 1.38312 * 119.87771 * 0.02562 * 14 13 12 16 16 C 1.37914 * 120.26422 * 359.88835 * 15 14 13 17 17 C 1.38963 * 107.94535 * 343.80280 * 12 11 10 18 18 C 1.46919 * 118.74044 * 53.60673 * 5 4 2 19 19 C 1.53191 * 108.77654 * 306.39362 * 18 5 4 20 20 C 1.53040 * 109.33924 * 54.61918 * 19 18 5 21 21 H 1.09003 * 109.43258 * 58.68784 * 20 19 18 22 22 N 1.46494 * 109.48834 * 178.64750 * 20 19 18 23 23 C 1.36943 * 120.00039 * 275.08542 * 22 20 19 24 24 H 1.07995 * 120.00017 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00031 * 179.97438 * 23 22 20 26 26 N 1.31628 * 119.99898 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00002 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47197 * 359.97438 * 27 25 23 29 29 H 1.48490 * 109.47270 * 119.99929 * 27 25 23 30 30 H 1.48501 * 109.46869 * 239.99971 * 27 25 23 31 31 H 1.09001 * 109.47259 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47367 * 59.99925 * 1 2 3 33 33 H 1.08997 * 109.47278 * 299.99932 * 1 2 3 34 34 H 1.09006 * 109.58707 * 305.20428 * 4 2 1 35 35 H 1.08999 * 109.58960 * 65.48562 * 4 2 1 36 36 H 1.08995 * 109.47158 * 295.31482 * 8 6 5 37 37 H 1.08993 * 109.47701 * 55.32386 * 8 6 5 38 38 H 1.08995 * 110.77880 * 212.96594 * 10 9 8 39 39 H 1.09004 * 110.77924 * 336.20697 * 10 9 8 40 40 H 1.09005 * 110.74706 * 143.92984 * 11 10 9 41 41 H 1.09005 * 110.74927 * 267.26756 * 11 10 9 42 42 H 1.08001 * 119.95727 * 0.30277 * 13 12 11 43 43 H 1.07992 * 120.06309 * 180.02562 * 14 13 12 44 44 H 1.08000 * 119.86871 * 179.87104 * 15 14 13 45 45 H 1.08001 * 119.89712 * 179.97438 * 16 15 14 46 46 H 1.09004 * 109.58508 * 66.18249 * 18 5 4 47 47 H 1.09000 * 109.58897 * 186.46292 * 18 5 4 48 48 H 1.09003 * 109.50206 * 174.58291 * 19 18 5 49 49 H 1.08992 * 109.50068 * 294.65243 * 19 18 5 50 50 H 0.97001 * 120.00185 * 95.08198 * 22 20 19 51 51 H 0.96993 * 119.99716 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5045 -0.8288 -1.1698 6 6 4.2812 -0.3850 -2.1780 7 8 3.7732 0.1067 -3.1635 8 6 5.7805 -0.5007 -2.0813 9 7 6.3884 -0.0541 -3.3419 10 6 6.3709 1.4212 -3.4454 11 6 7.7662 1.8144 -2.9083 12 6 8.5940 0.5747 -3.1833 13 6 9.9580 0.3736 -3.2146 14 6 10.4676 -0.8796 -3.5021 15 6 9.6066 -1.9312 -3.7588 16 6 8.2418 -1.7357 -3.7270 17 6 7.7204 -0.4765 -3.4340 18 6 4.1052 -1.4267 0.0303 19 6 3.5708 -0.6955 1.2657 20 6 2.0408 -0.7228 1.2485 21 1 1.6966 -1.7570 1.2357 22 7 1.5265 -0.0524 2.4452 23 6 1.3964 -0.7484 3.6174 24 1 1.6725 -1.7916 3.6595 25 6 0.9096 -0.1130 4.7515 26 7 0.5735 1.1586 4.7003 27 14 0.7328 -1.0622 6.3506 28 1 1.1758 -2.4646 6.1454 29 1 1.5705 -0.4264 7.3989 30 1 -0.6892 -1.0504 6.7786 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8900 34 1 1.6051 -1.7212 -1.2986 35 1 1.7616 -0.1586 -2.1391 36 1 6.1410 0.1229 -1.2632 37 1 6.0536 -1.5392 -1.8942 38 1 6.2534 1.7347 -4.4827 39 1 5.5812 1.8431 -2.8237 40 1 8.1622 2.6716 -3.4530 41 1 7.7242 2.0211 -1.8389 42 1 10.6291 1.1956 -3.0139 43 1 11.5357 -1.0368 -3.5261 44 1 10.0047 -2.9092 -3.9853 45 1 7.5749 -2.5610 -3.9288 46 1 3.8374 -2.4819 0.0859 47 1 5.1897 -1.3269 -0.0154 48 1 3.9333 -1.1904 2.1667 49 1 3.9163 0.3382 1.2545 50 1 1.2781 0.8845 2.4074 51 1 0.2337 1.6027 5.4929 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036298529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:55 Heat of formation + Delta-G solvation = 22.757555 kcal Electronic energy + Delta-G solvation = -30270.292579 eV Core-core repulsion = 26362.888692 eV Total energy + Delta-G solvation = -3907.403887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21965 -39.87674 -37.78581 -36.71977 -34.62679 -33.06312 -32.54278 -31.49908 -30.37672 -29.35912 -29.14071 -27.59349 -25.78357 -24.73621 -23.30352 -22.81951 -21.72105 -21.51086 -21.35515 -19.83538 -18.87283 -17.45024 -17.09846 -16.68817 -16.45095 -15.87083 -15.52770 -15.37765 -15.00045 -14.92715 -14.19585 -14.06655 -13.87475 -13.76462 -13.49775 -13.39619 -13.32963 -13.07133 -12.81088 -12.55439 -12.46941 -12.26281 -12.03632 -11.82321 -11.75963 -11.59843 -11.42644 -11.19021 -11.12576 -10.97877 -10.84052 -10.66248 -10.43016 -10.19367 -10.08183 -9.77996 -9.65061 -9.41718 -9.08085 -8.94354 -8.47498 -8.13508 -7.00166 -5.81281 -3.10034 1.01568 1.11069 2.67245 2.89120 3.39289 3.42336 3.45128 3.47364 3.53700 4.27857 4.48009 4.50987 4.54472 4.70315 4.76650 4.82889 4.91174 4.97989 5.09703 5.15608 5.18942 5.23677 5.26235 5.32514 5.33275 5.48169 5.49665 5.57204 5.59599 5.66211 5.66963 5.77063 5.85336 5.95057 6.06468 6.07957 6.11411 6.16053 6.23775 6.26733 6.36219 6.40974 6.44819 6.49417 6.58861 6.63927 6.78033 6.90151 7.00382 7.02223 7.50425 7.65641 8.25885 8.37007 9.48521 10.05901 10.40623 11.41248 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015898 B = 0.002372 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.756218 B =11800.917850 C =12565.329308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.122 3.878 5 N -0.607 5.607 6 C 0.515 3.485 7 O -0.530 6.530 8 C 0.041 3.959 9 N -0.475 5.475 10 C 0.060 3.940 11 C -0.115 4.115 12 C -0.137 4.137 13 C -0.090 4.090 14 C -0.133 4.133 15 C -0.105 4.105 16 C -0.111 4.111 17 C 0.091 3.909 18 C 0.107 3.893 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.721 5.721 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.384 0.616 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.003 -3.576 -17.042 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.341 5.341 6 C 0.302 3.698 7 O -0.406 6.406 8 C -0.088 4.088 9 N -0.191 5.191 10 C -0.066 4.066 11 C -0.153 4.153 12 C -0.139 4.139 13 C -0.108 4.108 14 C -0.151 4.151 15 C -0.123 4.123 16 C -0.131 4.131 17 C -0.005 4.005 18 C -0.017 4.017 19 C -0.193 4.193 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.218 0.782 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.316 -3.656 -17.808 24.428 hybrid contribution 0.349 0.122 1.715 1.754 sum 16.665 -3.533 -16.093 23.435 Atomic orbital electron populations 1.21659 0.94117 1.01776 1.01844 1.21737 0.96586 0.99982 0.94631 0.91342 1.21683 0.78320 1.00801 0.99275 1.48157 1.07198 1.60674 1.18097 1.20318 0.88636 0.78158 0.82685 1.90680 1.75019 1.44199 1.30692 1.22115 0.92852 1.02978 0.90858 1.59684 1.14218 1.12335 1.32901 1.23127 0.95681 0.84773 1.03061 1.21782 0.95117 0.96216 1.02205 1.21044 0.94172 0.96626 1.02088 1.20410 0.93352 0.97383 0.99698 1.21061 0.99726 0.92716 1.01645 1.20937 0.92589 0.99155 0.99666 1.20540 0.95200 0.95488 1.01875 1.19570 0.88096 0.94341 0.98477 1.21872 0.97297 0.97578 0.84938 1.22686 1.00509 1.00326 0.95777 1.20184 0.90265 0.95731 0.86445 0.93401 1.42419 1.76450 1.11442 1.05770 1.19255 1.35822 0.94110 0.87659 0.91184 1.24737 1.02084 0.96028 0.98073 1.69670 1.50069 1.09462 1.28804 0.86155 0.77336 0.78862 0.84054 1.20583 1.21944 1.21905 0.93048 0.93818 0.90764 0.91651 0.89374 0.90734 0.87866 0.89009 0.89396 0.89401 0.89952 0.86187 0.85788 0.85574 0.85771 0.91329 0.90843 0.90546 0.92257 0.78226 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.02 37.16 0.34 -1.85 16 2 C -0.11 -1.76 2.46 -90.50 -0.22 -1.98 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.12 1.74 5.71 -3.71 -0.02 1.72 16 5 N -0.61 -8.27 2.97 -172.77 -0.51 -8.78 16 6 C 0.52 7.27 7.33 -10.99 -0.08 7.19 16 7 O -0.53 -9.12 14.94 5.56 0.08 -9.04 16 8 C 0.04 0.46 3.59 -4.97 -0.02 0.45 16 9 N -0.47 -5.72 4.66 -170.39 -0.79 -6.52 16 10 C 0.06 0.66 6.22 -2.43 -0.02 0.64 16 11 C -0.12 -1.04 6.93 -26.61 -0.18 -1.22 16 12 C -0.14 -1.37 6.23 -104.04 -0.65 -2.02 16 13 C -0.09 -0.78 10.03 -39.68 -0.40 -1.18 16 14 C -0.13 -1.04 10.06 -39.53 -0.40 -1.44 16 15 C -0.10 -0.85 10.02 -39.67 -0.40 -1.25 16 16 C -0.11 -1.08 10.04 -39.27 -0.39 -1.47 16 17 C 0.09 1.01 5.49 -83.41 -0.46 0.55 16 18 C 0.11 1.31 6.31 -3.71 -0.02 1.29 16 19 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 20 C 0.18 3.37 2.19 -67.89 -0.15 3.22 16 21 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 22 N -0.72 -16.92 4.41 -53.39 -0.24 -17.16 16 23 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 27 Si 0.90 21.79 29.55 -169.99 -5.02 16.76 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.33 7.01 -51.93 -0.36 0.96 16 36 H 0.07 0.79 7.71 -51.93 -0.40 0.39 16 37 H 0.10 1.03 7.52 -51.93 -0.39 0.64 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.02 7.11 -51.93 -0.37 0.65 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.74 5.95 -51.93 -0.31 0.43 16 48 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.38 9.78 7.50 -40.82 -0.31 9.47 16 51 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -31.37 401.66 -11.58 -42.95 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.41 Total: 9.14 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.47 Total: -6.77 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.82 Total: -59.10 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.37 -11.58 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036298529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.712 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds