Wall clock time and date at job start Wed Apr 1 2020 03:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.52273 * 2 1 4 4 C 1.53188 * 109.49509 * 120.07713 * 2 1 3 5 5 N 1.46924 * 108.77433 * 174.58969 * 4 2 1 6 6 C 1.34777 * 120.63423 * 126.37256 * 5 4 2 7 7 O 1.21281 * 119.99897 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00027 * 180.02562 * 6 5 4 9 9 N 1.46904 * 109.46942 * 184.68302 * 8 6 5 10 10 C 1.47898 * 110.99902 * 283.95835 * 9 8 6 11 11 C 1.54604 * 102.63216 * 265.33089 * 10 9 8 12 12 C 1.51576 * 102.81766 * 334.40719 * 11 10 9 13 13 C 1.37911 * 131.56705 * 196.45325 * 12 11 10 14 14 C 1.38304 * 120.08009 * 179.97438 * 13 12 11 15 15 C 1.38299 * 119.88159 * 359.52470 * 14 13 12 16 16 C 1.37911 * 120.27002 * 0.33948 * 15 14 13 17 17 C 1.38970 * 107.94628 * 16.17181 * 12 11 10 18 18 C 1.46930 * 118.73907 * 306.64489 * 5 4 2 19 19 C 1.52763 * 109.00568 * 53.30660 * 18 5 4 20 20 C 1.53030 * 109.49927 * 239.91767 * 2 1 3 21 21 H 1.09005 * 109.46281 * 58.66465 * 20 2 1 22 22 N 1.46496 * 109.46161 * 298.70410 * 20 2 1 23 23 C 1.36942 * 120.00243 * 154.99925 * 22 20 2 24 24 H 1.08005 * 119.99605 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00191 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99675 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00111 * 179.97438 * 25 23 22 28 28 H 1.48509 * 109.47144 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47153 * 120.00059 * 27 25 23 30 30 H 1.48499 * 109.47377 * 240.00066 * 27 25 23 31 31 H 1.09000 * 109.47208 * 299.92496 * 1 2 3 32 32 H 1.09003 * 109.47071 * 59.92007 * 1 2 3 33 33 H 1.09004 * 109.47083 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.58590 * 54.80438 * 4 2 1 35 35 H 1.09000 * 109.70697 * 294.44337 * 4 2 1 36 36 H 1.08990 * 109.47573 * 64.68479 * 8 6 5 37 37 H 1.08999 * 109.47115 * 304.67946 * 8 6 5 38 38 H 1.09004 * 110.77674 * 147.04617 * 10 9 8 39 39 H 1.09002 * 110.93949 * 23.69542 * 10 9 8 40 40 H 1.08995 * 110.74049 * 216.07115 * 11 10 9 41 41 H 1.09003 * 110.89636 * 92.81269 * 11 10 9 42 42 H 1.08002 * 119.96345 * 359.72714 * 13 12 11 43 43 H 1.08003 * 120.05369 * 179.76178 * 14 13 12 44 44 H 1.08003 * 119.86860 * 180.36649 * 15 14 13 45 45 H 1.07996 * 119.90753 * 180.02562 * 16 15 14 46 46 H 1.08997 * 109.59062 * 173.14394 * 18 5 4 47 47 H 1.09005 * 109.58552 * 293.56915 * 18 5 4 48 48 H 1.09004 * 109.56053 * 185.55504 * 19 18 5 49 49 H 1.09002 * 109.38479 * 65.52268 * 19 18 5 50 50 H 0.96996 * 120.00260 * 334.99795 * 22 20 2 51 51 H 0.97000 * 119.99783 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7237 1.2496 5 7 3.5045 -0.8290 1.1697 6 6 4.2811 -0.3855 2.1780 7 8 3.7731 0.1067 3.1633 8 6 5.7806 -0.5000 2.0807 9 7 6.3885 -0.0542 3.3416 10 6 6.3699 1.4210 3.4464 11 6 7.7648 1.8157 2.9090 12 6 8.5935 0.5764 3.1824 13 6 9.9577 0.3772 3.2169 14 6 10.4682 -0.8774 3.4966 15 6 9.6082 -1.9301 3.7514 16 6 8.2432 -1.7356 3.7209 17 6 7.7208 -0.4756 3.4330 18 6 4.1056 -1.4215 -0.0331 19 6 3.5708 -0.6949 -1.2659 20 6 2.0408 -0.7231 -1.2482 21 1 1.6582 -0.2245 -2.1389 22 7 1.5784 -2.1130 -1.2307 23 6 1.4482 -2.8062 -2.4045 24 1 1.6869 -2.3283 -3.3432 25 6 1.0106 -4.1235 -2.3878 26 7 0.7202 -4.7060 -1.2438 27 14 0.8323 -5.0688 -3.9890 28 1 1.2183 -4.1944 -5.1257 29 1 1.7162 -6.2618 -3.9605 30 1 -0.5785 -5.5018 -4.1539 31 1 -0.3633 0.5127 0.8906 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6052 -1.7216 1.2980 35 1 1.7636 -0.1600 2.1403 36 1 6.1404 0.1245 1.2632 37 1 6.0542 -1.5382 1.8926 38 1 6.2527 1.7334 4.4841 39 1 5.5816 1.8458 2.8250 40 1 8.1602 2.6726 3.4544 41 1 7.7246 2.0254 1.8401 42 1 10.6283 1.2009 3.0214 43 1 11.5366 -1.0339 3.5198 44 1 10.0071 -2.9084 3.9757 45 1 7.5770 -2.5617 3.9211 46 1 5.1895 -1.3158 0.0101 47 1 3.8413 -2.4774 -0.0913 48 1 3.9335 -1.1897 -2.1670 49 1 3.9159 0.3390 -1.2546 50 1 1.3644 -2.5424 -0.3877 51 1 0.4147 -5.6265 -1.2321 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036298530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:58 Heat of formation + Delta-G solvation = 25.350422 kcal Electronic energy + Delta-G solvation = -30706.932523 eV Core-core repulsion = 26799.641071 eV Total energy + Delta-G solvation = -3907.291452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.13982 -39.80290 -37.80536 -36.64756 -34.27271 -32.99462 -32.49995 -31.43335 -30.28129 -29.21264 -29.09134 -27.51901 -25.73148 -24.56725 -23.48280 -23.22939 -21.68251 -21.46114 -21.32263 -19.48018 -18.16389 -17.47794 -17.18219 -16.54305 -16.37830 -15.74048 -15.42621 -15.31117 -14.94804 -14.64544 -14.29964 -14.01047 -13.92799 -13.79430 -13.39260 -13.34953 -13.21090 -12.98272 -12.75313 -12.55717 -12.45221 -12.22422 -11.97545 -11.75879 -11.55171 -11.42377 -11.33772 -11.19468 -11.06329 -10.94251 -10.81185 -10.50882 -10.47284 -10.17742 -9.96913 -9.85393 -9.57837 -9.28317 -9.01599 -8.95895 -8.21716 -8.05519 -7.00280 -5.81579 -3.10166 1.08416 1.17833 2.82995 3.05158 3.39285 3.45496 3.47599 3.51146 3.63509 4.33883 4.53984 4.55038 4.64371 4.76315 4.83047 4.89699 5.00806 5.10127 5.21066 5.21865 5.26623 5.31175 5.35407 5.39457 5.49742 5.52739 5.56691 5.64018 5.70046 5.71916 5.79862 5.90129 5.91749 6.05372 6.07646 6.15190 6.21562 6.24584 6.29469 6.30540 6.39070 6.48216 6.52495 6.59659 6.66087 6.70415 6.75146 6.91440 6.99662 7.08863 7.66505 7.72140 8.36884 8.42874 9.48605 10.05279 10.40288 11.40799 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.002720 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.089513 B =10290.593827 C =11410.806656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.121 3.879 5 N -0.602 5.602 6 C 0.514 3.486 7 O -0.535 6.535 8 C 0.042 3.958 9 N -0.474 5.474 10 C 0.061 3.939 11 C -0.114 4.114 12 C -0.139 4.139 13 C -0.090 4.090 14 C -0.134 4.134 15 C -0.104 4.104 16 C -0.110 4.110 17 C 0.093 3.907 18 C 0.113 3.887 19 C -0.150 4.150 20 C 0.179 3.821 21 H 0.050 0.950 22 N -0.719 5.719 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.047 0.953 50 H 0.384 0.616 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.464 11.787 7.786 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.001 4.001 5 N -0.335 5.335 6 C 0.300 3.700 7 O -0.412 6.412 8 C -0.087 4.087 9 N -0.191 5.191 10 C -0.065 4.065 11 C -0.152 4.152 12 C -0.142 4.142 13 C -0.109 4.109 14 C -0.153 4.153 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.003 4.003 18 C -0.009 4.009 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.068 0.932 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.137 0.863 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.093 0.907 49 H 0.066 0.934 50 H 0.219 0.781 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.781 11.757 8.523 21.445 hybrid contribution 0.335 -0.563 -1.350 1.501 sum 16.116 11.194 7.172 20.892 Atomic orbital electron populations 1.21668 0.94236 1.03207 1.00409 1.21694 0.96500 0.98756 0.95805 0.91747 1.21622 0.78487 1.01551 0.98478 1.48113 1.07141 1.60225 1.18027 1.20273 0.88559 0.78326 0.82810 1.90664 1.75034 1.44745 1.30721 1.22108 0.93038 1.03024 0.90495 1.59648 1.14149 1.12195 1.33091 1.23106 0.95524 0.84939 1.02969 1.21770 0.95236 0.96188 1.02027 1.21032 0.94158 0.96609 1.02371 1.20387 0.93303 0.97325 0.99893 1.21052 0.99687 0.92706 1.01816 1.20943 0.92591 0.99174 0.99528 1.20579 0.95240 0.95564 1.01660 1.19579 0.88102 0.94320 0.98311 1.21644 0.96035 0.99343 0.83905 1.22451 1.00637 0.98559 0.97454 1.20202 0.90689 0.87398 0.94864 0.93158 1.42489 1.78943 1.07699 1.06976 1.19255 1.37156 0.93845 0.86574 0.91228 1.24711 1.02281 0.97211 0.96598 1.69660 1.51706 1.12996 1.23604 0.86173 0.77301 0.79975 0.83036 1.20649 1.21980 1.21972 0.93772 0.92837 0.91022 0.90707 0.89819 0.90997 0.87800 0.89074 0.89497 0.89535 0.90117 0.86276 0.85826 0.85545 0.85641 0.91597 0.89581 0.90702 0.93439 0.78068 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.05 37.16 0.34 -1.85 16 2 C -0.11 -1.73 2.67 -90.51 -0.24 -1.97 16 3 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 2.03 5.42 -3.71 -0.02 2.01 16 5 N -0.60 -9.52 2.98 -173.03 -0.52 -10.03 16 6 C 0.51 8.09 7.33 -10.99 -0.08 8.01 16 7 O -0.53 -9.96 14.94 5.56 0.08 -9.88 16 8 C 0.04 0.54 3.59 -4.97 -0.02 0.52 16 9 N -0.47 -6.22 4.66 -170.38 -0.79 -7.01 16 10 C 0.06 0.70 6.21 -2.43 -0.02 0.68 16 11 C -0.11 -1.05 6.93 -26.61 -0.18 -1.23 16 12 C -0.14 -1.47 6.23 -104.04 -0.65 -2.12 16 13 C -0.09 -0.83 10.03 -39.68 -0.40 -1.23 16 14 C -0.13 -1.15 10.06 -39.53 -0.40 -1.55 16 15 C -0.10 -0.95 10.02 -39.68 -0.40 -1.35 16 16 C -0.11 -1.22 10.04 -39.27 -0.39 -1.61 16 17 C 0.09 1.12 5.50 -83.40 -0.46 0.66 16 18 C 0.11 1.73 6.03 -3.93 -0.02 1.71 16 19 C -0.15 -2.37 5.76 -26.83 -0.15 -2.53 16 20 C 0.18 3.24 2.53 -67.90 -0.17 3.07 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -16.20 3.65 -53.39 -0.19 -16.40 16 23 C -0.24 -6.09 9.93 -15.06 -0.15 -6.23 16 24 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 27 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.33 7.53 -51.93 -0.39 0.93 16 34 H 0.07 1.40 6.64 -51.93 -0.34 1.06 16 35 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 36 H 0.07 0.81 7.70 -51.93 -0.40 0.41 16 37 H 0.10 1.27 7.53 -51.93 -0.39 0.88 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.02 7.12 -51.93 -0.37 0.65 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 44 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 45 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 46 H 0.07 0.83 5.95 -51.93 -0.31 0.52 16 47 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.38 9.34 5.92 -40.82 -0.24 9.10 16 51 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -30.38 397.69 -11.49 -41.87 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -8.25 Total: 10.44 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -3.51 Total: -5.43 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.78 Total: -59.54 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.38 -11.49 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036298530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.221 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds