Wall clock time and date at job start Wed Apr 1 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.52728 * 2 1 4 4 C 1.53195 * 109.49506 * 120.08310 * 2 1 3 5 5 N 1.46928 * 108.77589 * 174.58590 * 4 2 1 6 6 C 1.34771 * 120.63185 * 126.36530 * 5 4 2 7 7 O 1.21279 * 120.00339 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99989 * 179.97438 * 6 5 4 9 9 N 1.46902 * 109.47197 * 185.82573 * 8 6 5 10 10 C 1.47903 * 111.00086 * 75.66826 * 9 8 6 11 11 C 1.54610 * 102.62777 * 94.66213 * 10 9 8 12 12 C 1.51570 * 102.81491 * 25.60496 * 11 10 9 13 13 C 1.37918 * 131.57137 * 163.76925 * 12 11 10 14 14 C 1.38307 * 120.08177 * 180.32459 * 13 12 11 15 15 C 1.38305 * 119.88421 * 359.97438 * 14 13 12 16 16 C 1.37910 * 120.26531 * 359.86729 * 15 14 13 17 17 C 1.38968 * 107.94999 * 343.81261 * 12 11 10 18 18 C 1.46929 * 118.73586 * 306.64077 * 5 4 2 19 19 C 1.52753 * 109.00802 * 53.30849 * 18 5 4 20 20 C 1.53039 * 109.49565 * 239.91377 * 2 1 3 21 21 H 1.08999 * 109.46236 * 298.70689 * 20 2 1 22 22 N 1.46502 * 109.46019 * 58.66924 * 20 2 1 23 23 C 1.36934 * 120.00110 * 205.00040 * 22 20 2 24 24 H 1.07993 * 120.00090 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99907 * 180.02562 * 23 22 20 26 26 N 1.31617 * 120.00060 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 119.99899 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.46938 * 90.00861 * 27 25 23 29 29 H 1.48507 * 109.47125 * 210.00303 * 27 25 23 30 30 H 1.48493 * 109.47442 * 330.00384 * 27 25 23 31 31 H 1.09000 * 109.46950 * 299.92622 * 1 2 3 32 32 H 1.09007 * 109.46939 * 59.91558 * 1 2 3 33 33 H 1.08992 * 109.47867 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.58821 * 54.79576 * 4 2 1 35 35 H 1.08999 * 109.58660 * 294.37139 * 4 2 1 36 36 H 1.08995 * 109.46856 * 65.82578 * 8 6 5 37 37 H 1.09000 * 109.47037 * 305.82702 * 8 6 5 38 38 H 1.08999 * 110.77638 * 212.94550 * 10 9 8 39 39 H 1.09002 * 110.77617 * 336.37641 * 10 9 8 40 40 H 1.08995 * 110.74318 * 143.93964 * 11 10 9 41 41 H 1.08997 * 110.74062 * 267.09557 * 11 10 9 42 42 H 1.07996 * 119.95696 * 0.29261 * 13 12 11 43 43 H 1.08001 * 120.05749 * 179.97438 * 14 13 12 44 44 H 1.08002 * 119.86430 * 179.89209 * 15 14 13 45 45 H 1.07990 * 119.90078 * 180.02562 * 16 15 14 46 46 H 1.08997 * 109.58678 * 173.14667 * 18 5 4 47 47 H 1.09008 * 109.58617 * 293.56979 * 18 5 4 48 48 H 1.09005 * 109.56157 * 185.55244 * 19 18 5 49 49 H 1.08996 * 109.38883 * 65.51873 * 19 18 5 50 50 H 0.97001 * 119.99887 * 24.99819 * 22 20 2 51 51 H 0.97003 * 119.99895 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7239 1.2496 5 7 3.5045 -0.8292 1.1696 6 6 4.2810 -0.3857 2.1779 7 8 3.7731 0.1056 3.1636 8 6 5.7805 -0.5014 2.0812 9 7 6.3870 -0.0812 3.3514 10 6 6.2270 -1.1256 4.3864 11 6 7.5556 -1.9096 4.2838 12 6 8.5119 -0.8780 3.7191 13 6 9.8894 -0.8414 3.6622 14 6 10.5310 0.2406 3.0874 15 6 9.7887 1.2861 2.5689 16 6 8.4110 1.2530 2.6203 17 6 7.7568 0.1650 3.1963 18 6 4.1054 -1.4218 -0.0331 19 6 3.5708 -0.6952 -1.2659 20 6 2.0407 -0.7232 -1.2483 21 1 1.6966 -1.7574 -1.2352 22 7 1.5265 -0.0531 -2.4453 23 6 1.3963 -0.7494 -3.6172 24 1 1.6731 -1.7924 -3.6592 25 6 0.9096 -0.1142 -4.7515 26 7 0.7850 -0.7833 -5.8780 27 14 0.4316 1.6901 -4.6790 28 1 1.6096 2.5282 -5.0182 29 1 -0.6593 1.9526 -5.6519 30 1 -0.0356 2.0238 -3.3096 31 1 -0.3633 0.5127 0.8907 32 1 -0.3633 0.5152 -0.8893 33 1 -0.3634 -1.0275 -0.0005 34 1 1.6051 -1.7216 1.2980 35 1 1.7637 -0.1580 2.1389 36 1 6.1430 0.1381 1.2764 37 1 6.0524 -1.5363 1.8735 38 1 6.1176 -0.6777 5.3740 39 1 5.3787 -1.7705 4.1569 40 1 7.8843 -2.2427 5.2682 41 1 7.4526 -2.7566 3.6056 42 1 10.4678 -1.6584 4.0675 43 1 11.6097 0.2691 3.0435 44 1 10.2901 2.1317 2.1217 45 1 7.8372 2.0723 2.2133 46 1 5.1894 -1.3162 0.0101 47 1 3.8410 -2.4777 -0.0914 48 1 3.9334 -1.1900 -2.1670 49 1 3.9159 0.3386 -1.2546 50 1 1.2782 0.8839 -2.4077 51 1 0.4445 -0.3396 -6.6705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036298532.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:02 Heat of formation + Delta-G solvation = 27.300862 kcal Electronic energy + Delta-G solvation = -30312.000008 eV Core-core repulsion = 26404.793134 eV Total energy + Delta-G solvation = -3907.206874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.26275 -39.95325 -37.88664 -36.77898 -34.76152 -33.11605 -32.58752 -31.60602 -30.42638 -29.86015 -29.20470 -27.66714 -25.94496 -24.81533 -23.34656 -22.60149 -21.70551 -21.53749 -21.34344 -20.02679 -18.96181 -17.64583 -17.35055 -16.85115 -16.44746 -15.92980 -15.57570 -15.39144 -15.08302 -14.88071 -14.39541 -14.14520 -13.93137 -13.84999 -13.64024 -13.40201 -13.32164 -12.95147 -12.87327 -12.61669 -12.52132 -12.41883 -12.14652 -11.96397 -11.85576 -11.75063 -11.50484 -11.44212 -11.16317 -11.07411 -10.91954 -10.71147 -10.54796 -10.25849 -10.11172 -9.80647 -9.61776 -9.46630 -9.09998 -8.96404 -8.55266 -8.16275 -7.31192 -5.81417 -3.16874 0.99464 1.09415 2.61466 2.83278 3.34247 3.37713 3.39106 3.42951 3.48841 4.22432 4.42294 4.44754 4.55259 4.65154 4.72981 4.80069 4.87374 4.92059 5.02547 5.03666 5.13017 5.14172 5.17084 5.22863 5.30112 5.39566 5.41663 5.49435 5.52861 5.57764 5.61448 5.66857 5.79447 5.82619 5.94829 5.99298 6.05915 6.08616 6.12554 6.22633 6.25311 6.26183 6.36913 6.43081 6.47947 6.57911 6.65750 6.75507 6.90959 6.97340 7.43698 7.94058 8.20493 8.37753 9.15968 9.88875 10.08802 11.36832 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.002474 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.269543 B =11315.087316 C =12170.433984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.123 3.877 5 N -0.609 5.609 6 C 0.514 3.486 7 O -0.527 6.527 8 C 0.041 3.959 9 N -0.474 5.474 10 C 0.059 3.941 11 C -0.114 4.114 12 C -0.138 4.138 13 C -0.090 4.090 14 C -0.133 4.133 15 C -0.104 4.104 16 C -0.110 4.110 17 C 0.092 3.908 18 C 0.107 3.893 19 C -0.153 4.153 20 C 0.189 3.811 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.242 4.242 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.059 0.941 50 H 0.361 0.639 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.586 -1.683 20.700 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.087 0.913 4 C 0.000 4.000 5 N -0.343 5.343 6 C 0.301 3.699 7 O -0.403 6.403 8 C -0.088 4.088 9 N -0.190 5.190 10 C -0.067 4.067 11 C -0.152 4.152 12 C -0.141 4.141 13 C -0.109 4.109 14 C -0.151 4.151 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.005 4.005 18 C -0.016 4.016 19 C -0.194 4.194 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.713 3.287 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.143 0.857 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.194 0.806 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.940 -1.154 21.176 26.530 hybrid contribution 0.099 0.674 -0.568 0.887 sum 16.039 -0.481 20.608 26.118 Atomic orbital electron populations 1.21670 0.94143 1.02118 1.01594 1.21787 0.96580 1.00059 0.94949 0.91339 1.21662 0.78432 1.00826 0.99087 1.48187 1.07134 1.60860 1.18120 1.20340 0.88646 0.78044 0.82879 1.90687 1.74957 1.43641 1.30999 1.22131 0.92873 1.01456 0.92294 1.59653 1.10363 1.42291 1.06742 1.23131 0.96382 0.91023 0.96209 1.21753 0.94240 0.97240 1.01931 1.21011 0.94326 0.95933 1.02839 1.20399 0.92521 0.98513 0.99419 1.21070 0.99844 0.94363 0.99840 1.20955 0.93158 0.98784 0.99317 1.20569 0.94150 0.96978 1.01291 1.19548 0.88021 0.94522 0.98363 1.21781 0.97419 0.97707 0.84720 1.22579 1.00020 1.00524 0.96292 1.20158 0.90437 0.96036 0.85423 0.92531 1.42774 1.78074 1.10229 1.07614 1.19039 1.36450 0.95792 0.85929 0.89218 1.24658 1.01323 0.97427 0.95625 1.69695 1.52086 1.35702 1.00623 0.86589 0.78236 0.86826 0.77074 1.21174 1.21785 1.20289 0.93570 0.91404 0.92577 0.91444 0.89287 0.87549 0.91033 0.88947 0.89734 0.89448 0.90045 0.86203 0.85754 0.85503 0.85680 0.90686 0.91173 0.89987 0.92262 0.80615 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.02 37.15 0.34 -1.73 16 2 C -0.11 -1.73 2.46 -90.50 -0.22 -1.96 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.12 1.66 5.72 -3.71 -0.02 1.64 16 5 N -0.61 -7.87 2.98 -173.03 -0.52 -8.39 16 6 C 0.51 6.96 7.16 -10.99 -0.08 6.89 16 7 O -0.53 -8.85 15.38 5.56 0.09 -8.77 16 8 C 0.04 0.45 3.60 -4.97 -0.02 0.43 16 9 N -0.47 -5.53 4.59 -170.37 -0.78 -6.31 16 10 C 0.06 0.59 6.36 -2.43 -0.02 0.57 16 11 C -0.11 -0.91 6.93 -26.61 -0.18 -1.09 16 12 C -0.14 -1.32 6.23 -104.04 -0.65 -1.97 16 13 C -0.09 -0.75 10.03 -39.67 -0.40 -1.14 16 14 C -0.13 -1.03 10.06 -39.53 -0.40 -1.43 16 15 C -0.10 -0.86 10.02 -39.68 -0.40 -1.26 16 16 C -0.11 -1.10 10.05 -39.27 -0.39 -1.49 16 17 C 0.09 0.99 5.50 -83.40 -0.46 0.54 16 18 C 0.11 1.26 6.27 -3.93 -0.02 1.24 16 19 C -0.15 -2.35 5.64 -26.84 -0.15 -2.50 16 20 C 0.19 3.33 2.20 -67.89 -0.15 3.18 16 21 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 22 N -0.75 -16.53 4.22 -53.39 -0.23 -16.75 16 23 C -0.24 -6.48 10.41 -15.06 -0.16 -6.63 16 24 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 26 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 27 Si 0.88 21.68 27.73 -169.99 -4.71 16.97 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 30 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.18 7.37 -51.93 -0.38 0.79 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 36 H 0.11 1.11 7.75 -51.93 -0.40 0.71 16 37 H 0.07 0.66 7.47 -51.93 -0.39 0.27 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.83 7.30 -51.93 -0.38 0.46 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.07 0.72 5.95 -51.93 -0.31 0.41 16 47 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 48 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.36 8.08 5.36 -40.82 -0.22 7.86 16 51 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -32.61 399.04 -11.21 -43.83 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -8.37 Total: 7.91 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.48 Total: -6.67 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.75 Total: -59.29 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.61 -11.21 -43.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036298532.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.127 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds