Wall clock time and date at job start Wed Apr 1 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46902 * 2 1 4 4 H 1.09002 * 109.52132 * 305.07525 * 3 2 1 5 5 C 1.53186 * 109.49999 * 65.16099 * 3 2 1 6 6 N 1.46922 * 108.77689 * 174.58565 * 5 3 2 7 7 C 1.34777 * 120.63042 * 126.36751 * 6 5 3 8 8 O 1.21552 * 120.00172 * 354.28882 * 7 6 5 9 9 C 1.47840 * 120.00137 * 174.28734 * 7 6 5 10 10 C 1.40019 * 120.55789 * 305.99282 * 9 7 6 11 11 C 1.38356 * 118.28732 * 179.73548 * 10 9 7 12 12 C 1.38359 * 119.30195 * 0.55392 * 11 10 9 13 13 N 1.31923 * 121.07689 * 359.70864 * 12 11 10 14 14 C 1.31687 * 121.88139 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.71566 * 180.02562 * 14 13 12 16 16 C 1.53007 * 117.49947 * 13.67415 * 15 14 13 17 17 C 1.53002 * 117.49894 * 305.01697 * 15 14 13 18 18 C 1.46917 * 118.74105 * 306.39284 * 6 5 3 19 19 C 1.53192 * 108.77844 * 53.60486 * 18 6 5 20 20 C 1.53042 * 109.49368 * 185.00005 * 3 2 1 21 21 H 1.08993 * 109.44916 * 298.69095 * 20 3 2 22 22 N 1.46497 * 109.46050 * 58.66372 * 20 3 2 23 23 C 1.36944 * 119.99465 * 205.06442 * 22 20 3 24 24 H 1.07992 * 120.00018 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99796 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99814 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00106 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.46895 * 60.00399 * 27 25 23 29 29 H 1.48494 * 109.47269 * 300.00122 * 27 25 23 30 30 H 1.48494 * 109.47066 * 179.97438 * 27 25 23 31 31 H 1.09000 * 109.46838 * 60.00389 * 1 2 3 32 32 H 1.09000 * 109.46807 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47082 * 300.00132 * 1 2 3 34 34 H 1.08998 * 109.47082 * 239.99868 * 2 1 3 35 35 H 1.09000 * 109.46838 * 119.99611 * 2 1 3 36 36 H 1.09002 * 109.58583 * 54.79484 * 5 3 2 37 37 H 1.09009 * 109.58369 * 294.37481 * 5 3 2 38 38 H 1.07995 * 120.85738 * 359.97438 * 10 9 7 39 39 H 1.08007 * 120.35193 * 180.26099 * 11 10 9 40 40 H 1.08008 * 119.45680 * 179.67548 * 12 11 10 41 41 H 1.09003 * 115.55369 * 159.34895 * 15 14 13 42 42 H 1.08996 * 117.50000 * 0.02562 * 16 15 14 43 43 H 1.08998 * 117.49649 * 145.02088 * 16 15 14 44 44 H 1.09002 * 117.49965 * 214.98048 * 17 15 14 45 45 H 1.08999 * 117.49901 * 359.97438 * 17 15 14 46 46 H 1.09006 * 109.58552 * 293.82223 * 18 6 5 47 47 H 1.08997 * 109.58904 * 173.39568 * 18 6 5 48 48 H 1.09003 * 109.50346 * 185.41654 * 19 18 6 49 49 H 1.09000 * 109.52261 * 65.33269 * 19 18 6 50 50 H 0.96999 * 120.00494 * 25.06618 * 22 20 3 51 51 H 0.97004 * 120.00665 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9828 -0.8408 5 6 1.6385 2.1268 1.3104 6 7 2.2450 3.4644 1.3506 7 6 1.4855 4.5566 1.5671 8 8 0.2759 4.4534 1.6279 9 6 2.1236 5.8801 1.7307 10 6 3.1295 6.0723 2.6856 11 6 3.6983 7.3288 2.7949 12 6 3.2513 8.3483 1.9733 13 7 2.2977 8.1392 1.0860 14 6 1.7299 6.9600 0.9399 15 6 0.6451 6.7757 -0.0897 16 6 0.4703 7.8775 -1.1369 17 6 -0.5625 7.7126 -0.0192 18 6 3.6951 3.5889 1.1498 19 6 4.0736 2.8882 -0.1589 20 6 3.5652 1.4451 -0.1257 21 1 4.0006 0.9263 0.7282 22 7 3.9541 0.7621 -1.3620 23 6 5.1918 0.1852 -1.4652 24 1 5.8809 0.2334 -0.6351 25 6 5.5602 -0.4625 -2.6365 26 7 4.7201 -0.5216 -3.6479 27 14 7.2487 -1.2488 -2.7776 28 1 7.3990 -2.2900 -1.7294 29 1 8.2949 -0.2105 -2.5975 30 1 7.3943 -1.8717 -4.1177 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.9964 1.5378 2.1548 37 1 0.5531 2.2161 1.3584 38 1 3.4557 5.2597 3.3178 39 1 4.4797 7.5131 3.5174 40 1 3.6899 9.3315 2.0602 41 1 0.4668 5.7479 -0.4060 42 1 1.1402 8.7355 -1.0813 43 1 0.1768 7.5746 -2.1420 44 1 -1.5351 7.3013 -0.2894 45 1 -0.5724 8.4620 0.7722 46 1 4.2208 3.1191 1.9811 47 1 3.9668 4.6429 1.0918 48 1 5.1578 2.8895 -0.2720 49 1 3.6196 3.4146 -0.9985 50 1 3.3350 0.7185 -2.1075 51 1 3.8437 -0.1123 -3.5752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037887199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:12 Heat of formation + Delta-G solvation = 33.306467 kcal Electronic energy + Delta-G solvation = -31018.787627 eV Core-core repulsion = 27111.841175 eV Total energy + Delta-G solvation = -3906.946452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.15817 -39.65744 -37.82360 -37.01900 -34.95641 -34.06450 -32.76828 -31.85334 -31.45348 -29.47854 -28.62082 -25.63366 -24.87599 -24.02944 -23.86954 -22.77287 -22.41141 -21.00421 -21.00276 -20.19406 -19.34984 -17.44656 -17.36971 -17.28189 -16.45103 -16.29464 -15.40909 -15.12027 -14.87690 -14.54165 -14.42625 -14.13255 -13.94875 -13.64332 -13.63659 -13.47765 -13.43629 -13.18571 -12.91724 -12.82771 -12.19649 -11.99396 -11.87766 -11.70110 -11.59579 -11.40766 -11.01866 -10.95920 -10.79165 -10.63405 -10.59889 -10.36448 -10.29348 -10.22189 -10.05496 -9.97318 -9.87831 -9.58051 -9.20034 -9.04482 -8.93243 -8.58188 -7.06984 -6.12833 -3.13285 0.55552 0.89524 2.55154 2.92482 3.33834 3.48672 3.51660 3.69446 3.88704 3.94608 4.21277 4.39564 4.50823 4.63029 4.73976 4.86200 4.90826 4.95735 5.00949 5.06854 5.10468 5.19148 5.24238 5.33705 5.37041 5.45722 5.54310 5.56658 5.56908 5.62027 5.70386 5.75109 5.77927 5.79583 5.90066 6.00080 6.01970 6.04060 6.09893 6.14701 6.23330 6.27254 6.30742 6.34114 6.45010 6.55320 6.70765 6.81230 6.93624 7.34137 7.65529 7.76610 8.05981 8.72293 9.18729 10.05229 10.20556 11.35158 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.003127 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.641875 B = 8953.312030 C = 9691.352214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.598 5.598 7 C 0.565 3.435 8 O -0.532 6.532 9 C -0.168 4.168 10 C -0.041 4.041 11 C -0.184 4.184 12 C 0.120 3.880 13 N -0.485 5.485 14 C 0.209 3.791 15 C -0.120 4.120 16 C -0.158 4.158 17 C -0.149 4.149 18 C 0.105 3.895 19 C -0.150 4.150 20 C 0.190 3.810 21 H 0.049 0.951 22 N -0.731 5.731 23 C -0.331 4.331 24 H 0.063 0.937 25 C -0.043 4.043 26 N -0.943 5.943 27 Si 1.078 2.922 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.285 1.285 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.058 0.942 50 H 0.367 0.633 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 15.321 13.493 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.331 5.331 7 C 0.352 3.648 8 O -0.409 6.409 9 C -0.173 4.173 10 C -0.067 4.067 11 C -0.204 4.204 12 C -0.037 4.037 13 N -0.193 5.193 14 C 0.071 3.929 15 C -0.139 4.139 16 C -0.195 4.195 17 C -0.187 4.187 18 C -0.018 4.018 19 C -0.191 4.191 20 C 0.079 3.921 21 H 0.067 0.933 22 N -0.373 5.373 23 C -0.462 4.462 24 H 0.081 0.919 25 C -0.241 4.241 26 N -0.588 5.588 27 Si 0.909 3.091 28 H -0.223 1.223 29 H -0.223 1.223 30 H -0.211 1.211 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.178 0.822 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.113 0.887 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.200 0.800 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.338 15.048 12.150 20.064 hybrid contribution -0.549 0.176 1.472 1.581 sum -5.887 15.224 13.621 21.260 Atomic orbital electron populations 1.21845 0.96615 1.01157 1.01395 1.21437 0.94515 0.95580 1.03349 1.21802 0.97673 0.96287 0.96804 0.91280 1.21787 0.99561 0.81050 0.97874 1.48108 1.08674 1.06546 1.69724 1.18072 0.86523 0.83434 0.76793 1.90781 1.13369 1.85769 1.51008 1.20661 1.00157 0.95654 1.00845 1.21720 0.91945 0.97879 0.95188 1.22072 1.02474 0.93680 1.02172 1.22911 0.91644 0.99380 0.89805 1.67411 1.09418 1.22744 1.19730 1.20363 0.92773 0.87139 0.92599 1.20966 0.96301 0.97774 0.98829 1.23002 1.02406 1.00079 0.94050 1.22889 0.93292 1.01003 1.01495 1.21959 0.79252 1.01286 0.99303 1.22662 1.02293 0.99145 0.95029 1.20113 0.90638 0.90398 0.90923 0.93303 1.42409 1.16554 1.65616 1.12682 1.20001 0.92484 1.32098 1.01593 0.91853 1.25717 1.05767 1.00212 0.92388 1.70883 1.08364 1.47447 1.32084 0.83272 0.74218 0.75854 0.75794 1.22306 1.22338 1.21077 0.92990 0.93053 0.93084 0.90212 0.92311 0.91407 0.88901 0.84183 0.84069 0.82237 0.86065 0.87486 0.88476 0.88258 0.88670 0.91331 0.90531 0.90483 0.92341 0.79960 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 37.16 0.36 -1.70 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.11 -1.69 1.92 -90.50 -0.17 -1.87 16 4 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 5 C 0.12 1.69 5.34 -3.72 -0.02 1.67 16 6 N -0.60 -8.32 2.97 -173.89 -0.52 -8.83 16 7 C 0.56 8.31 6.26 -12.33 -0.08 8.23 16 8 O -0.53 -9.19 15.31 5.32 0.08 -9.10 16 9 C -0.17 -2.17 4.60 -104.82 -0.48 -2.65 16 10 C -0.04 -0.41 7.94 -38.87 -0.31 -0.72 16 11 C -0.18 -1.51 10.10 -39.49 -0.40 -1.91 16 12 C 0.12 1.09 11.17 -17.47 -0.20 0.90 16 13 N -0.48 -5.80 9.37 -9.14 -0.09 -5.88 16 14 C 0.21 2.76 6.47 -82.18 -0.53 2.23 16 15 C -0.12 -1.56 5.20 -91.77 -0.48 -2.04 16 16 C -0.16 -1.73 10.02 -26.69 -0.27 -2.00 16 17 C -0.15 -1.66 10.23 -26.69 -0.27 -1.93 16 18 C 0.11 1.38 5.62 -3.72 -0.02 1.35 16 19 C -0.15 -2.51 5.66 -26.61 -0.15 -2.67 16 20 C 0.19 3.52 2.19 -67.89 -0.15 3.37 16 21 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 22 N -0.73 -17.22 4.33 -53.38 -0.23 -17.45 16 23 C -0.33 -8.85 9.93 -15.05 -0.15 -9.00 16 24 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 25 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16 26 N -0.94 -28.48 13.70 55.49 0.76 -27.72 16 27 Si 1.08 25.31 29.92 -169.99 -5.09 20.23 16 28 H -0.30 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.30 -6.65 7.11 56.52 0.40 -6.24 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.63 6.70 -51.93 -0.35 0.29 16 34 H 0.08 1.51 7.22 -51.93 -0.37 1.13 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.36 5.72 -51.92 -0.30 1.06 16 38 H 0.14 1.16 7.82 -52.49 -0.41 0.75 16 39 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.12 1.76 6.80 -51.93 -0.35 1.41 16 42 H 0.11 1.18 7.62 -51.93 -0.40 0.78 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.93 5.39 -51.93 -0.28 0.65 16 48 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.37 9.12 6.35 -40.82 -0.26 8.86 16 51 H 0.26 7.60 6.78 -40.82 -0.28 7.33 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -32.12 402.02 -10.69 -42.81 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -8.12 Total: 11.82 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -3.55 Total: -11.92 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.07 Total: -59.88 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.09 Total: 20.23 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.12 -10.69 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037887199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.113 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds