Wall clock time and date at job start Wed Apr 1 2020 02:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47226 * 2 1 4 4 H 1.08994 * 109.49729 * 305.07019 * 3 2 1 5 5 C 1.53628 * 109.42882 * 65.28884 * 3 2 1 6 6 N 1.46922 * 108.54111 * 174.72406 * 5 3 2 7 7 C 1.34773 * 120.63341 * 126.37197 * 6 5 3 8 8 O 1.21516 * 119.99801 * 3.51770 * 7 6 5 9 9 C 1.48144 * 120.00429 * 183.51887 * 7 6 5 10 10 C 1.39838 * 120.92509 * 310.07012 * 9 7 6 11 11 C 1.38129 * 119.00453 * 180.02562 * 10 9 7 12 12 N 1.31823 * 120.89865 * 0.02562 * 11 10 9 13 13 C 1.31806 * 122.04922 * 359.97438 * 12 11 10 14 14 C 1.50690 * 119.55146 * 179.72266 * 13 12 11 15 15 C 1.53006 * 117.49958 * 163.62276 * 14 13 12 16 16 C 1.53005 * 60.00054 * 252.50866 * 15 14 13 17 17 C 1.38168 * 120.89280 * 359.97438 * 13 12 11 18 18 C 1.46929 * 118.74101 * 306.09131 * 6 5 3 19 19 C 1.53198 * 108.77097 * 53.86295 * 18 6 5 20 20 C 1.53034 * 109.31275 * 305.36223 * 19 18 6 21 21 H 1.09000 * 109.46088 * 181.36869 * 20 19 18 22 22 N 1.46494 * 109.46494 * 301.34454 * 20 19 18 23 23 C 1.36930 * 120.00371 * 274.99973 * 22 20 19 24 24 H 1.07999 * 119.99814 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00341 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99944 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00428 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46735 * 59.99854 * 27 25 23 29 29 H 1.48499 * 109.47466 * 180.02562 * 27 25 23 30 30 H 1.48508 * 109.46977 * 300.00521 * 27 25 23 31 31 H 1.09002 * 109.47055 * 59.99939 * 1 2 3 32 32 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47062 * 299.99638 * 1 2 3 34 34 H 1.09005 * 109.47016 * 239.99890 * 2 1 3 35 35 H 1.08998 * 109.47099 * 120.00818 * 2 1 3 36 36 H 1.09004 * 109.73821 * 54.99023 * 5 3 2 37 37 H 1.08997 * 109.66384 * 294.41621 * 5 3 2 38 38 H 1.08004 * 120.49380 * 0.04426 * 10 9 7 39 39 H 1.07997 * 119.55007 * 179.97438 * 11 10 9 40 40 H 1.09005 * 115.55267 * 309.32639 * 14 13 12 41 41 H 1.08994 * 117.49332 * 359.97438 * 15 14 13 42 42 H 1.08995 * 117.50233 * 145.01946 * 15 14 13 43 43 H 1.08996 * 117.49777 * 252.51139 * 16 15 14 44 44 H 1.09002 * 117.51759 * 107.47847 * 16 15 14 45 45 H 1.07998 * 120.49830 * 180.02562 * 17 13 12 46 46 H 1.08999 * 109.58773 * 173.64798 * 18 6 5 47 47 H 1.09002 * 109.58714 * 294.07782 * 18 6 5 48 48 H 1.09004 * 109.49705 * 65.31673 * 19 18 6 49 49 H 1.08999 * 109.49597 * 185.38012 * 19 18 6 50 50 H 0.97002 * 119.99597 * 94.99784 * 22 20 19 51 51 H 0.97001 * 120.00196 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9822 -0.8409 5 6 1.6394 2.1261 1.3161 6 7 2.2451 3.4642 1.3508 7 6 1.4859 4.5563 1.5683 8 8 0.2996 4.4349 1.8015 9 6 2.0976 5.9048 1.5231 10 6 3.2628 6.1899 2.2418 11 6 3.7990 7.4609 2.1715 12 7 3.2273 8.3973 1.4407 13 6 2.1289 8.1709 0.7483 14 6 1.5192 9.2846 -0.0634 15 6 0.4962 8.9001 -1.1342 16 6 1.8944 9.3666 -1.5445 17 6 1.5261 6.9278 0.7606 18 6 3.6953 3.5887 1.1500 19 6 4.0737 2.8880 -0.1588 20 6 3.5653 1.4450 -0.1257 21 1 3.8544 0.9369 -1.0457 22 7 4.1508 0.7474 1.0218 23 6 5.3879 0.1704 0.9140 24 1 5.9319 0.2293 -0.0172 25 6 5.9429 -0.4901 2.0014 26 7 5.2797 -0.5624 3.1360 27 14 7.6309 -1.2766 1.8545 28 1 8.6344 -0.2353 1.5170 29 1 7.9938 -1.9146 3.1455 30 1 7.6061 -2.3056 0.7840 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5140 0.8899 36 1 2.0009 1.5394 2.1607 37 1 0.5543 2.2148 1.3678 38 1 3.7364 5.4276 2.8426 39 1 4.6984 7.6908 2.7234 40 1 1.3627 10.2230 0.4688 41 1 0.2645 7.8416 -1.2517 42 1 -0.3337 9.5854 -1.3065 43 1 1.9844 10.3587 -1.9867 44 1 2.5826 8.6151 -1.9316 45 1 0.6264 6.7492 0.1905 46 1 3.9671 4.6427 1.0920 47 1 4.2210 3.1188 1.9813 48 1 3.6193 3.4148 -0.9980 49 1 5.1578 2.8898 -0.2721 50 1 3.6620 0.6942 1.8580 51 1 5.6674 -1.0243 3.8958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037888159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:40 Heat of formation + Delta-G solvation = 37.974913 kcal Electronic energy + Delta-G solvation = -30865.444707 eV Core-core repulsion = 26958.700694 eV Total energy + Delta-G solvation = -3906.744013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.01122 -39.71708 -37.87470 -37.18088 -34.63010 -33.81405 -32.70914 -31.74710 -31.11800 -29.48681 -28.56261 -25.93670 -24.84111 -24.07650 -23.67543 -23.47456 -22.50279 -21.57204 -20.81920 -19.74610 -18.49261 -17.47782 -17.23391 -16.92212 -16.26335 -15.88786 -15.68216 -15.10356 -14.88999 -14.63046 -14.55519 -14.23614 -14.04635 -13.81947 -13.66555 -13.33042 -13.14761 -13.05155 -12.65107 -12.53319 -12.23738 -11.97984 -11.81356 -11.60647 -11.48103 -11.14682 -11.09280 -10.95297 -10.85636 -10.77247 -10.76012 -10.39009 -10.33778 -10.26317 -10.17682 -9.90978 -9.83177 -9.60567 -9.40920 -9.07914 -8.93791 -8.35222 -7.03255 -5.83803 -3.12590 0.74503 0.88479 2.69203 3.04351 3.37462 3.38478 3.43999 3.44711 3.63462 3.93834 4.33422 4.51086 4.53130 4.61435 4.65981 4.84280 4.86211 4.94000 5.04728 5.20071 5.25864 5.29606 5.34413 5.43766 5.47958 5.49458 5.53790 5.58701 5.62955 5.64056 5.74275 5.75529 5.80143 5.84272 5.86997 5.94260 6.02113 6.09406 6.11760 6.27691 6.32389 6.36269 6.40972 6.50767 6.55536 6.64480 6.70106 6.87474 6.93503 7.53585 7.63669 7.76570 8.16789 8.34546 9.46282 10.02137 10.37362 11.38391 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.003141 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.812281 B = 8912.206179 C =10105.447755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.118 3.882 6 N -0.589 5.589 7 C 0.555 3.445 8 O -0.541 6.541 9 C -0.067 4.067 10 C -0.147 4.147 11 C 0.103 3.897 12 N -0.470 5.470 13 C 0.155 3.845 14 C -0.107 4.107 15 C -0.174 4.174 16 C -0.161 4.161 17 C -0.124 4.124 18 C 0.103 3.897 19 C -0.149 4.149 20 C 0.178 3.822 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.147 0.853 39 H 0.164 0.836 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.141 0.859 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.047 0.953 49 H 0.075 0.925 50 H 0.384 0.616 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.706 15.710 -7.065 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.003 4.003 6 N -0.319 5.319 7 C 0.341 3.659 8 O -0.419 6.419 9 C -0.078 4.078 10 C -0.167 4.167 11 C -0.054 4.054 12 N -0.179 5.179 13 C 0.018 3.982 14 C -0.126 4.126 15 C -0.211 4.211 16 C -0.198 4.198 17 C -0.145 4.145 18 C -0.019 4.019 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.181 0.819 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.159 0.841 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.066 0.934 49 H 0.094 0.906 50 H 0.219 0.781 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.778 16.341 -6.986 19.399 hybrid contribution 0.695 -1.381 0.376 1.591 sum -7.083 14.960 -6.610 17.823 Atomic orbital electron populations 1.21859 0.96785 1.01109 1.01336 1.21418 0.94290 0.95625 1.03463 1.21834 0.97453 0.96219 0.96762 0.91539 1.21861 0.98829 0.81069 0.98583 1.48072 1.08957 1.06328 1.68575 1.18224 0.86128 0.83905 0.77601 1.90767 1.15164 1.86436 1.49524 1.20337 0.95235 0.94646 0.97551 1.22468 0.95141 0.99140 0.99978 1.22731 0.99035 0.88323 0.95290 1.67253 1.09051 1.35393 1.06208 1.20244 0.91116 0.92224 0.94661 1.20745 1.03348 0.98087 0.90395 1.23121 0.93187 1.02799 1.02031 1.22979 0.98305 1.03268 0.95280 1.21939 1.00726 0.92402 0.99422 1.22082 0.78806 1.00714 1.00331 1.22529 1.01912 0.99272 0.95341 1.20221 0.89673 0.90596 0.92725 0.93036 1.42463 1.19149 1.63940 1.10512 1.19161 0.93643 1.27172 0.97047 0.91315 1.24697 0.98540 1.01393 0.96006 1.69633 1.38201 1.47964 1.02235 0.86321 0.84332 0.79214 0.76595 1.21340 1.21794 1.21362 0.93385 0.93094 0.92787 0.91949 0.90425 0.90327 0.89434 0.83577 0.81867 0.85916 0.88189 0.87868 0.88065 0.88587 0.84107 0.90527 0.89292 0.93392 0.90621 0.78107 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.68 37.16 0.36 -1.66 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C -0.10 -1.61 2.15 -90.27 -0.19 -1.81 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.94 5.04 -3.49 -0.02 1.92 16 6 N -0.59 -9.30 2.97 -173.50 -0.51 -9.82 16 7 C 0.55 8.96 7.30 -12.19 -0.09 8.87 16 8 O -0.54 -10.20 16.48 5.35 0.09 -10.11 16 9 C -0.07 -0.92 5.05 -104.65 -0.53 -1.44 16 10 C -0.15 -1.78 7.48 -39.02 -0.29 -2.07 16 11 C 0.10 1.15 11.17 -17.60 -0.20 0.95 16 12 N -0.47 -5.84 10.25 -9.53 -0.10 -5.94 16 13 C 0.16 1.84 6.46 -82.63 -0.53 1.30 16 14 C -0.11 -0.99 6.21 -91.77 -0.57 -1.56 16 15 C -0.17 -1.33 9.79 -26.73 -0.26 -1.59 16 16 C -0.16 -1.27 10.23 -26.73 -0.27 -1.54 16 17 C -0.12 -1.56 9.10 -39.02 -0.36 -1.92 16 18 C 0.10 1.58 5.15 -3.71 -0.02 1.56 16 19 C -0.15 -2.39 5.78 -26.61 -0.15 -2.55 16 20 C 0.18 3.19 2.53 -67.89 -0.17 3.02 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -15.89 3.72 -53.39 -0.20 -16.09 16 23 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 24 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -26.44 13.06 55.49 0.72 -25.72 16 27 Si 0.90 21.37 29.55 -169.99 -5.02 16.34 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.40 7.70 -51.93 -0.40 1.00 16 36 H 0.08 1.43 6.63 -51.93 -0.34 1.08 16 37 H 0.09 1.44 5.75 -51.93 -0.30 1.14 16 38 H 0.15 1.65 7.07 -52.48 -0.37 1.28 16 39 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.10 0.79 6.39 -51.93 -0.33 0.46 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.14 1.65 6.26 -52.49 -0.33 1.32 16 46 H 0.08 1.03 4.51 -51.93 -0.23 0.80 16 47 H 0.09 1.58 7.74 -51.93 -0.40 1.18 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.38 9.12 5.93 -40.82 -0.24 8.88 16 51 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -29.80 399.49 -10.60 -40.40 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -7.92 Total: 11.85 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -3.68 Total: -6.93 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.09 Total: -57.56 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.80 -10.60 -40.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037888159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.370 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds