Wall clock time and date at job start Wed Apr 1 2020 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47417 * 2 1 4 4 H 1.09002 * 109.51933 * 54.91739 * 3 2 1 5 5 C 1.53191 * 109.49628 * 294.84066 * 3 2 1 6 6 N 1.46925 * 108.77291 * 185.41186 * 5 3 2 7 7 C 1.34776 * 120.62902 * 233.58627 * 6 5 3 8 8 O 1.21513 * 120.00487 * 359.67935 * 7 6 5 9 9 C 1.48170 * 119.99944 * 179.67801 * 7 6 5 10 10 C 1.39312 * 119.72639 * 202.37625 * 9 7 6 11 11 C 1.38585 * 119.06438 * 179.75466 * 10 9 7 12 12 C 1.38632 * 118.48198 * 0.50759 * 11 10 9 13 13 C 1.50707 * 120.32062 * 179.70702 * 12 11 10 14 14 C 1.52997 * 117.49915 * 188.64657 * 13 12 11 15 15 C 1.52997 * 117.49584 * 120.02342 * 13 12 11 16 16 C 1.38558 * 119.35610 * 359.73293 * 12 11 10 17 17 N 1.31526 * 120.90083 * 0.02562 * 16 12 11 18 18 C 1.46923 * 118.74325 * 53.60715 * 6 5 3 19 19 C 1.53166 * 108.76817 * 306.39343 * 18 6 5 20 20 C 1.53039 * 109.49751 * 175.00110 * 3 2 1 21 21 H 1.08999 * 109.45756 * 301.32106 * 20 3 2 22 22 N 1.46498 * 109.45710 * 61.29795 * 20 3 2 23 23 C 1.36942 * 119.99499 * 205.02306 * 22 20 3 24 24 H 1.07999 * 120.00124 * 0.02562 * 23 22 20 25 25 C 1.38810 * 119.99630 * 180.02562 * 23 22 20 26 26 N 1.31625 * 120.00118 * 180.02562 * 25 23 22 27 27 Si 1.86806 * 120.00160 * 359.97438 * 25 23 22 28 28 H 1.48492 * 109.47255 * 269.99949 * 27 25 23 29 29 H 1.48497 * 109.46687 * 30.00489 * 27 25 23 30 30 H 1.48506 * 109.46800 * 150.00104 * 27 25 23 31 31 H 1.08994 * 109.47347 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47062 * 300.00106 * 1 2 3 33 33 H 1.09003 * 109.47308 * 59.99120 * 1 2 3 34 34 H 1.08999 * 109.46584 * 240.00081 * 2 1 3 35 35 H 1.08996 * 109.47032 * 120.00048 * 2 1 3 36 36 H 1.08997 * 109.59086 * 305.19879 * 5 3 2 37 37 H 1.09003 * 109.58651 * 65.48272 * 5 3 2 38 38 H 1.08001 * 120.46705 * 359.97438 * 10 9 7 39 39 H 1.07996 * 120.76086 * 180.24470 * 11 10 9 40 40 H 1.08998 * 115.54748 * 334.35614 * 13 12 11 41 41 H 1.09008 * 117.49404 * 0.02562 * 14 13 12 42 42 H 1.08999 * 117.50060 * 145.02385 * 14 13 12 43 43 H 1.08997 * 117.49703 * 214.97948 * 15 13 12 44 44 H 1.08994 * 117.49927 * 359.97438 * 15 13 12 45 45 H 1.07996 * 119.54995 * 180.02562 * 16 12 11 46 46 H 1.09008 * 109.58095 * 66.17581 * 18 6 5 47 47 H 1.08992 * 109.58862 * 186.46257 * 18 6 5 48 48 H 1.08998 * 109.50065 * 294.67744 * 19 18 6 49 49 H 1.08994 * 109.47921 * 174.58779 * 19 18 6 50 50 H 0.96993 * 120.00446 * 25.03108 * 22 20 3 51 51 H 0.96992 * 120.00045 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6386 2.1268 -1.3105 6 7 2.2452 3.4644 -1.3506 7 6 1.4859 4.5564 -1.5680 8 8 0.2885 4.4398 -1.7389 9 6 2.1112 5.8994 -1.5986 10 6 1.3335 7.0292 -1.3545 11 6 1.9335 8.2781 -1.3815 12 6 3.2889 8.3545 -1.6624 13 6 3.9821 9.6919 -1.7088 14 6 5.4237 9.7230 -2.2204 15 6 5.1359 9.9238 -0.7312 16 6 4.0000 7.1894 -1.9005 17 7 3.4063 6.0163 -1.8638 18 6 3.6953 3.5888 -1.1498 19 6 4.0735 2.8882 0.1587 20 6 3.5653 1.4450 0.1257 21 1 3.8546 0.9370 1.0457 22 7 4.1506 0.7474 -1.0219 23 6 5.3883 0.1712 -0.9144 24 1 5.9326 0.2307 0.0166 25 6 5.9432 -0.4892 -2.0019 26 7 7.1325 -1.0435 -1.8985 27 14 5.0014 -0.5926 -3.6118 28 1 4.1590 -1.8155 -3.6149 29 1 4.1357 0.6052 -3.7566 30 1 5.9609 -0.6497 -4.7438 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5140 -0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.9964 1.5378 -2.1549 37 1 0.5531 2.2139 -1.3596 38 1 0.2787 6.9328 -1.1437 39 1 1.3575 9.1718 -1.1923 40 1 3.3449 10.5436 -1.9465 41 1 5.8706 8.7761 -2.5238 42 1 5.7352 10.5953 -2.7949 43 1 5.2580 10.9283 -0.3260 44 1 5.3933 9.1093 -0.0542 45 1 5.0561 7.2452 -2.1192 46 1 4.2209 3.1189 -1.9811 47 1 3.9674 4.6428 -1.0943 48 1 3.6191 3.4148 0.9979 49 1 5.1576 2.8896 0.2716 50 1 3.6617 0.6938 -1.8579 51 1 7.5204 -1.5047 -2.6585 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037961537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:59 Heat of formation + Delta-G solvation = 52.372655 kcal Electronic energy + Delta-G solvation = -30889.333498 eV Core-core repulsion = 26983.213818 eV Total energy + Delta-G solvation = -3906.119680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.10726 -39.69789 -38.00537 -37.28290 -34.59439 -33.81844 -32.76062 -31.71105 -31.28177 -29.75072 -28.75148 -26.11662 -24.53203 -24.08949 -23.76274 -23.03692 -22.68950 -21.27968 -20.79474 -20.29697 -18.54759 -17.88191 -17.43429 -17.14923 -16.13196 -15.85882 -15.36556 -15.09509 -15.02808 -14.85598 -14.44256 -14.22075 -13.79361 -13.73209 -13.51498 -13.47844 -13.28006 -13.00887 -12.88084 -12.42429 -12.37134 -12.15065 -11.91165 -11.84297 -11.59042 -11.41148 -11.20742 -11.01543 -10.88425 -10.82866 -10.73186 -10.40237 -10.34044 -10.18684 -10.16483 -9.97632 -9.75497 -9.52552 -9.19870 -9.04968 -8.77053 -8.27054 -7.22727 -5.75512 -3.09932 0.44585 0.95685 2.65259 3.09746 3.36727 3.38004 3.41217 3.46619 3.71988 3.93378 4.18568 4.38785 4.48678 4.53146 4.59634 4.60244 4.66730 4.96862 4.98828 5.09756 5.14983 5.22472 5.29211 5.42237 5.42768 5.48777 5.55793 5.56282 5.60486 5.66650 5.69458 5.74296 5.76515 5.82422 5.85925 5.91446 5.99607 6.09955 6.21390 6.23027 6.30799 6.36131 6.47027 6.53474 6.65256 6.72200 6.75585 6.85745 7.00315 7.48808 7.66838 8.01392 8.25021 8.43837 9.22506 9.95403 10.15651 11.43087 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.003475 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.609583 B = 8056.026551 C = 9625.176680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.114 3.886 6 N -0.579 5.579 7 C 0.566 3.434 8 O -0.548 6.548 9 C 0.081 3.919 10 C -0.109 4.109 11 C -0.077 4.077 12 C -0.085 4.085 13 C -0.121 4.121 14 C -0.174 4.174 15 C -0.166 4.166 16 C 0.091 3.909 17 N -0.436 5.436 18 C 0.084 3.916 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.058 0.942 22 N -0.743 5.743 23 C -0.237 4.237 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.935 5.935 27 Si 0.877 3.123 28 H -0.284 1.284 29 H -0.278 1.278 30 H -0.292 1.292 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.162 0.838 46 H 0.076 0.924 47 H 0.128 0.872 48 H 0.046 0.954 49 H 0.077 0.923 50 H 0.360 0.640 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 21.664 3.065 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.008 4.008 6 N -0.308 5.308 7 C 0.352 3.648 8 O -0.427 6.427 9 C -0.056 4.056 10 C -0.130 4.130 11 C -0.103 4.103 12 C -0.087 4.087 13 C -0.139 4.139 14 C -0.211 4.211 15 C -0.203 4.203 16 C -0.068 4.068 17 N -0.147 5.147 18 C -0.038 4.038 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.076 0.924 22 N -0.387 5.387 23 C -0.367 4.367 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.583 5.583 27 Si 0.707 3.293 28 H -0.211 1.211 29 H -0.204 1.204 30 H -0.218 1.218 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.179 0.821 46 H 0.095 0.905 47 H 0.145 0.855 48 H 0.065 0.935 49 H 0.096 0.904 50 H 0.194 0.806 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.418 20.689 2.890 22.915 hybrid contribution -0.849 0.564 -1.130 1.522 sum -10.267 21.253 1.760 23.669 Atomic orbital electron populations 1.21861 0.96632 1.01164 1.01483 1.21431 0.94465 0.95682 1.03318 1.21797 0.97596 0.96147 0.97018 0.91039 1.21755 0.99057 0.81754 0.98207 1.48041 1.09638 1.05756 1.67374 1.17889 0.85869 0.83363 0.77684 1.90744 1.14204 1.85981 1.51772 1.21233 0.90033 0.94486 0.99859 1.22051 1.01688 0.91613 0.97636 1.21386 0.93973 0.97856 0.97089 1.20330 0.94420 0.95077 0.98869 1.20972 0.91100 0.95247 1.06616 1.23110 0.96783 1.04074 0.97083 1.23070 1.00735 1.03512 0.92945 1.22882 1.00837 0.86787 0.96258 1.67779 1.09609 1.26221 1.11136 1.22778 0.77656 1.04735 0.98620 1.22525 1.02054 0.98473 0.96095 1.20207 0.89313 0.90980 0.92096 0.92375 1.42827 1.19773 1.65736 1.10322 1.19056 0.92190 1.26337 0.99130 0.89204 1.24612 0.96459 1.00390 0.97438 1.69690 1.16326 1.41426 1.30829 0.86673 0.79467 0.77815 0.85295 1.21105 1.20429 1.21806 0.93036 0.93129 0.92840 0.91151 0.91469 0.91407 0.89257 0.83530 0.84134 0.86525 0.87957 0.88048 0.88144 0.88242 0.82051 0.90547 0.85517 0.93490 0.90432 0.80624 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.11 -1.71 5.19 -26.73 -0.14 -1.85 16 3 C -0.11 -1.70 2.14 -90.50 -0.19 -1.89 16 4 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 5 C 0.11 1.93 5.03 -3.71 -0.02 1.91 16 6 N -0.58 -9.84 2.97 -173.78 -0.52 -10.36 16 7 C 0.57 9.51 7.61 -12.18 -0.09 9.42 16 8 O -0.55 -10.19 15.96 5.35 0.09 -10.11 16 9 C 0.08 1.15 6.44 -83.01 -0.53 0.62 16 10 C -0.11 -1.24 9.63 -39.05 -0.38 -1.62 16 11 C -0.08 -0.68 9.88 -39.31 -0.39 -1.07 16 12 C -0.08 -0.75 5.63 -104.35 -0.59 -1.34 16 13 C -0.12 -0.78 6.06 -91.77 -0.56 -1.33 16 14 C -0.17 -1.01 9.87 -26.73 -0.26 -1.27 16 15 C -0.17 -0.96 10.17 -26.73 -0.27 -1.23 16 16 C 0.09 0.97 10.47 -17.56 -0.18 0.78 16 17 N -0.44 -5.95 6.40 -9.80 -0.06 -6.01 16 18 C 0.08 1.43 5.74 -3.73 -0.02 1.41 16 19 C -0.15 -2.59 5.78 -26.62 -0.15 -2.74 16 20 C 0.18 3.42 2.53 -67.89 -0.17 3.25 16 21 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 22 N -0.74 -16.70 3.53 -53.38 -0.19 -16.89 16 23 C -0.24 -6.42 10.41 -15.06 -0.16 -6.57 16 24 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.94 13.97 55.49 0.78 -28.17 16 27 Si 0.88 22.09 27.74 -169.99 -4.71 17.37 16 28 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 30 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.69 6.70 -51.93 -0.35 0.35 16 34 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.24 6.64 -51.93 -0.34 0.89 16 37 H 0.09 1.47 5.73 -51.93 -0.30 1.18 16 38 H 0.15 1.55 7.81 -52.49 -0.41 1.14 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.61 6.20 -51.92 -0.32 0.29 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.16 1.40 6.03 -52.49 -0.32 1.08 16 46 H 0.08 1.52 7.74 -51.92 -0.40 1.11 16 47 H 0.13 2.01 4.00 -77.45 -0.31 1.71 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 50 H 0.36 8.19 3.80 -40.82 -0.16 8.04 16 51 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -32.27 395.29 -10.48 -42.75 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.97 Total: 10.52 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.85 Total: -5.06 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.01 Total: -61.43 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.27 -10.48 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037961537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.118 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds