Wall clock time and date at job start Wed Apr 1 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47417 * 2 1 4 4 H 1.09002 * 109.51933 * 54.91739 * 3 2 1 5 5 C 1.53191 * 109.49628 * 294.84066 * 3 2 1 6 6 N 1.46925 * 108.77291 * 185.41186 * 5 3 2 7 7 C 1.34776 * 120.62902 * 233.58627 * 6 5 3 8 8 O 1.21513 * 120.00487 * 359.67935 * 7 6 5 9 9 C 1.48170 * 119.99944 * 179.67801 * 7 6 5 10 10 C 1.39312 * 119.72639 * 202.37625 * 9 7 6 11 11 C 1.38585 * 119.06438 * 179.75466 * 10 9 7 12 12 C 1.38632 * 118.48198 * 0.50759 * 11 10 9 13 13 C 1.50707 * 120.32062 * 179.70702 * 12 11 10 14 14 C 1.52997 * 117.49915 * 188.64657 * 13 12 11 15 15 C 1.52997 * 117.49584 * 120.02342 * 13 12 11 16 16 C 1.38558 * 119.35610 * 359.73293 * 12 11 10 17 17 N 1.31526 * 120.90083 * 0.02562 * 16 12 11 18 18 C 1.46923 * 118.74325 * 53.60715 * 6 5 3 19 19 C 1.53166 * 108.76817 * 306.39343 * 18 6 5 20 20 C 1.53039 * 109.49751 * 175.00110 * 3 2 1 21 21 H 1.08999 * 109.45756 * 301.32106 * 20 3 2 22 22 N 1.46498 * 109.45710 * 61.29795 * 20 3 2 23 23 C 1.36942 * 119.99499 * 205.02306 * 22 20 3 24 24 H 1.07999 * 120.00124 * 0.02562 * 23 22 20 25 25 C 1.38810 * 119.99630 * 180.02562 * 23 22 20 26 26 N 1.31625 * 120.00118 * 180.02562 * 25 23 22 27 27 Si 1.86806 * 120.00160 * 359.97438 * 25 23 22 28 28 H 1.48492 * 109.47255 * 269.99949 * 27 25 23 29 29 H 1.48497 * 109.46687 * 30.00489 * 27 25 23 30 30 H 1.48506 * 109.46800 * 150.00104 * 27 25 23 31 31 H 1.08994 * 109.47347 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47062 * 300.00106 * 1 2 3 33 33 H 1.09003 * 109.47308 * 59.99120 * 1 2 3 34 34 H 1.08999 * 109.46584 * 240.00081 * 2 1 3 35 35 H 1.08996 * 109.47032 * 120.00048 * 2 1 3 36 36 H 1.08997 * 109.59086 * 305.19879 * 5 3 2 37 37 H 1.09003 * 109.58651 * 65.48272 * 5 3 2 38 38 H 1.08001 * 120.46705 * 359.97438 * 10 9 7 39 39 H 1.07996 * 120.76086 * 180.24470 * 11 10 9 40 40 H 1.08998 * 115.54748 * 334.35614 * 13 12 11 41 41 H 1.09008 * 117.49404 * 0.02562 * 14 13 12 42 42 H 1.08999 * 117.50060 * 145.02385 * 14 13 12 43 43 H 1.08997 * 117.49703 * 214.97948 * 15 13 12 44 44 H 1.08994 * 117.49927 * 359.97438 * 15 13 12 45 45 H 1.07996 * 119.54995 * 180.02562 * 16 12 11 46 46 H 1.09008 * 109.58095 * 66.17581 * 18 6 5 47 47 H 1.08992 * 109.58862 * 186.46257 * 18 6 5 48 48 H 1.08998 * 109.50065 * 294.67744 * 19 18 6 49 49 H 1.08994 * 109.47921 * 174.58779 * 19 18 6 50 50 H 0.96993 * 120.00446 * 25.03108 * 22 20 3 51 51 H 0.96992 * 120.00045 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6386 2.1268 -1.3105 6 7 2.2452 3.4644 -1.3506 7 6 1.4859 4.5564 -1.5680 8 8 0.2885 4.4398 -1.7389 9 6 2.1112 5.8994 -1.5986 10 6 1.3335 7.0292 -1.3545 11 6 1.9335 8.2781 -1.3815 12 6 3.2889 8.3545 -1.6624 13 6 3.9821 9.6919 -1.7088 14 6 5.4237 9.7230 -2.2204 15 6 5.1359 9.9238 -0.7312 16 6 4.0000 7.1894 -1.9005 17 7 3.4063 6.0163 -1.8638 18 6 3.6953 3.5888 -1.1498 19 6 4.0735 2.8882 0.1587 20 6 3.5653 1.4450 0.1257 21 1 3.8546 0.9370 1.0457 22 7 4.1506 0.7474 -1.0219 23 6 5.3883 0.1712 -0.9144 24 1 5.9326 0.2307 0.0166 25 6 5.9432 -0.4892 -2.0019 26 7 7.1325 -1.0435 -1.8985 27 14 5.0014 -0.5926 -3.6118 28 1 4.1590 -1.8155 -3.6149 29 1 4.1357 0.6052 -3.7566 30 1 5.9609 -0.6497 -4.7438 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5140 -0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.9964 1.5378 -2.1549 37 1 0.5531 2.2139 -1.3596 38 1 0.2787 6.9328 -1.1437 39 1 1.3575 9.1718 -1.1923 40 1 3.3449 10.5436 -1.9465 41 1 5.8706 8.7761 -2.5238 42 1 5.7352 10.5953 -2.7949 43 1 5.2580 10.9283 -0.3260 44 1 5.3933 9.1093 -0.0542 45 1 5.0561 7.2452 -2.1192 46 1 4.2209 3.1189 -1.9811 47 1 3.9674 4.6428 -1.0943 48 1 3.6191 3.4148 0.9979 49 1 5.1576 2.8896 0.2716 50 1 3.6617 0.6938 -1.8579 51 1 7.5204 -1.5047 -2.6585 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037961537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:58 Heat of formation + Delta-G solvation = 34.840780 kcal Electronic energy + Delta-G solvation = -30890.093737 eV Core-core repulsion = 26983.213818 eV Total energy + Delta-G solvation = -3906.879919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12079 -40.84682 -39.30124 -37.97717 -36.04868 -35.42270 -33.67996 -33.50727 -32.16434 -31.48800 -30.05712 -27.31217 -25.65431 -25.20255 -25.01139 -24.70203 -23.13465 -22.24859 -21.93376 -21.35301 -20.05116 -19.82697 -18.54329 -18.16779 -17.17680 -16.86589 -16.73770 -16.29011 -16.15919 -15.95385 -15.72432 -15.56131 -15.12752 -14.98301 -14.77308 -14.65065 -14.51863 -14.28609 -14.22912 -13.82766 -13.67659 -13.24943 -12.98634 -12.92130 -12.74415 -12.68925 -12.47602 -12.32503 -12.31238 -12.07378 -11.88713 -11.83642 -11.64316 -11.55466 -11.42137 -11.24080 -11.19205 -10.97160 -10.81271 -10.09196 -9.88343 -9.64003 -9.22384 -7.99617 -5.29813 -0.44423 0.16540 1.34927 1.35340 1.41863 1.54745 1.86860 2.47332 2.57984 2.98531 3.09541 3.32461 3.48940 3.56509 3.60545 3.74240 3.84430 3.87420 3.92817 4.00209 4.01950 4.13257 4.19687 4.32027 4.33689 4.34751 4.41219 4.44393 4.57060 4.62170 4.68349 4.79844 4.85525 4.89540 4.93872 5.02458 5.03850 5.06833 5.08894 5.12502 5.21617 5.22946 5.26694 5.28207 5.30963 5.36988 5.46502 5.56712 5.69671 5.82535 6.24486 6.30496 6.62199 6.99596 7.10916 7.87918 8.06529 9.22402 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.003475 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.609583 B = 8056.026551 C = 9625.176680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.093 4.093 4 H 0.090 0.910 5 C 0.116 3.884 6 N -0.584 5.584 7 C 0.564 3.436 8 O -0.571 6.571 9 C 0.049 3.951 10 C -0.107 4.107 11 C -0.068 4.068 12 C -0.071 4.071 13 C -0.125 4.125 14 C -0.176 4.176 15 C -0.162 4.162 16 C 0.081 3.919 17 N -0.464 5.464 18 C 0.093 3.907 19 C -0.142 4.142 20 C 0.177 3.823 21 H 0.051 0.949 22 N -0.741 5.741 23 C -0.212 4.212 24 H 0.063 0.937 25 C -0.057 4.057 26 N -0.983 5.983 27 Si 0.938 3.062 28 H -0.279 1.279 29 H -0.265 1.265 30 H -0.298 1.298 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.178 0.822 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.176 0.824 46 H 0.044 0.956 47 H 0.145 0.855 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.361 0.639 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 24.898 3.350 27.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.113 4.113 4 H 0.108 0.892 5 C -0.006 4.006 6 N -0.313 5.313 7 C 0.352 3.648 8 O -0.452 6.452 9 C -0.087 4.087 10 C -0.128 4.128 11 C -0.094 4.094 12 C -0.073 4.073 13 C -0.143 4.143 14 C -0.212 4.212 15 C -0.199 4.199 16 C -0.078 4.078 17 N -0.175 5.175 18 C -0.029 4.029 19 C -0.183 4.183 20 C 0.069 3.931 21 H 0.069 0.931 22 N -0.385 5.385 23 C -0.343 4.343 24 H 0.081 0.919 25 C -0.248 4.248 26 N -0.634 5.634 27 Si 0.767 3.233 28 H -0.206 1.206 29 H -0.190 1.190 30 H -0.225 1.225 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.170 0.830 39 H 0.195 0.805 40 H 0.156 0.844 41 H 0.115 0.885 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.109 0.891 45 H 0.193 0.807 46 H 0.062 0.938 47 H 0.161 0.839 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.195 0.805 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.308 23.954 3.200 26.682 hybrid contribution -0.242 -0.276 -1.134 1.192 sum -11.550 23.679 2.066 26.426 Atomic orbital electron populations 1.21796 0.94378 1.02160 1.02085 1.21402 0.96434 0.94747 1.02163 1.21695 0.95289 0.96931 0.97358 0.89196 1.21702 0.99329 0.81845 0.97762 1.48072 1.09438 1.06004 1.67793 1.18331 0.85650 0.84241 0.76584 1.90711 1.15146 1.86571 1.52744 1.20950 0.90808 0.93755 1.03146 1.22187 1.01798 0.91775 0.97046 1.21779 0.94098 0.98027 0.95471 1.20620 0.94557 0.95645 0.96493 1.21081 0.91538 0.94329 1.07399 1.23203 0.96171 1.04469 0.97387 1.23123 0.99827 1.04115 0.92792 1.23197 1.01599 0.86695 0.96295 1.67497 1.09720 1.28074 1.12247 1.22673 0.77689 1.05524 0.96995 1.22399 1.01102 0.97556 0.97245 1.20432 0.91204 0.91248 0.90237 0.93074 1.42793 1.18338 1.65770 1.11596 1.19015 0.93104 1.24524 0.97636 0.91931 1.25244 0.97450 1.01316 1.00788 1.69846 1.18336 1.43548 1.31692 0.85670 0.78174 0.78312 0.81136 1.20574 1.19024 1.22509 0.91918 0.91761 0.92939 0.93384 0.91533 0.93221 0.88638 0.83015 0.80454 0.84447 0.88513 0.86673 0.86533 0.89142 0.80725 0.93758 0.83866 0.91126 0.92044 0.80547 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.67 71.98 0.70 -2.84 16 2 C -0.11 -3.27 5.19 30.60 0.16 -3.12 16 3 C -0.09 -2.91 2.14 -10.72 -0.02 -2.93 16 4 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 5 C 0.12 3.87 5.03 86.36 0.43 4.30 16 6 N -0.58 -19.74 2.97 -822.01 -2.44 -22.18 16 7 C 0.56 18.73 7.61 86.88 0.66 19.39 16 8 O -0.57 -20.96 15.96 -3.76 -0.06 -21.02 16 9 C 0.05 1.36 6.44 41.91 0.27 1.63 16 10 C -0.11 -2.23 9.63 22.61 0.22 -2.01 16 11 C -0.07 -0.98 9.88 22.45 0.22 -0.75 16 12 C -0.07 -1.05 5.63 -19.69 -0.11 -1.16 16 13 C -0.12 -1.15 6.06 -11.54 -0.07 -1.22 16 14 C -0.18 -1.52 9.87 30.59 0.30 -1.22 16 15 C -0.16 -1.37 10.17 30.59 0.31 -1.05 16 16 C 0.08 1.60 10.47 84.81 0.89 2.48 16 17 N -0.46 -12.32 6.40 -184.91 -1.18 -13.50 16 18 C 0.09 3.21 5.74 86.35 0.50 3.71 16 19 C -0.14 -4.89 5.78 30.66 0.18 -4.71 16 20 C 0.18 6.61 2.53 45.02 0.11 6.72 16 21 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 22 N -0.74 -33.87 3.53 -322.81 -1.14 -35.01 16 23 C -0.21 -11.78 10.41 84.03 0.87 -10.90 16 24 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 25 C -0.06 -3.33 5.50 84.86 0.47 -2.87 16 26 N -0.98 -62.89 13.97 21.65 0.30 -62.59 16 27 Si 0.94 46.78 27.74 68.60 1.90 48.68 16 28 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 29 H -0.26 -12.44 6.52 99.48 0.65 -11.80 16 30 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.28 6.70 -2.39 -0.02 1.26 16 34 H 0.05 1.65 7.70 -2.39 -0.02 1.63 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.83 6.64 -2.39 -0.02 1.81 16 37 H 0.10 3.08 5.73 -2.39 -0.01 3.07 16 38 H 0.15 2.93 7.81 -2.91 -0.02 2.90 16 39 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 0.95 6.20 -2.38 -0.01 0.94 16 42 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.18 2.80 6.03 -2.91 -0.02 2.78 16 46 H 0.04 1.80 7.74 -2.38 -0.02 1.78 16 47 H 0.15 4.55 4.00 -52.77 -0.21 4.34 16 48 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 49 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.36 16.55 3.80 -92.71 -0.35 16.20 16 51 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -71.98 395.29 3.80 -68.19 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.33 Total: 33.99 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 6.08 Total: 3.44 kcal Atomic # 7 Polarization: -128.81 SS G_CDS: -4.46 Total: -133.28 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.06 Total: -21.02 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.90 Total: 48.68 kcal Total: -71.98 3.80 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037961537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.027 kcal (2) G-P(sol) polarization free energy of solvation -71.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds