Wall clock time and date at job start Wed Apr 1 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47271 * 2 1 4 4 H 1.08998 * 109.49425 * 305.00239 * 3 2 1 5 5 C 1.53194 * 109.49288 * 65.06585 * 3 2 1 6 6 N 1.46929 * 108.77480 * 174.59009 * 5 3 2 7 7 C 1.34766 * 120.63450 * 126.41033 * 6 5 3 8 8 O 1.21521 * 119.99946 * 352.28425 * 7 6 5 9 9 C 1.48175 * 120.00187 * 172.28299 * 7 6 5 10 10 C 1.39314 * 119.72428 * 170.52034 * 9 7 6 11 11 C 1.38586 * 119.06003 * 179.77156 * 10 9 7 12 12 C 1.38628 * 118.48648 * 0.49723 * 11 10 9 13 13 C 1.50694 * 120.32655 * 179.76882 * 12 11 10 14 14 C 1.52994 * 117.50275 * 188.59988 * 13 12 11 15 15 C 1.52995 * 60.00266 * 252.50735 * 14 13 12 16 16 C 1.38563 * 119.35207 * 359.74995 * 12 11 10 17 17 N 1.31525 * 120.90302 * 359.97438 * 16 12 11 18 18 C 1.46930 * 118.73373 * 306.39042 * 6 5 3 19 19 C 1.53187 * 108.77658 * 53.60797 * 18 6 5 20 20 C 1.53038 * 109.34226 * 305.37776 * 19 18 6 21 21 H 1.08997 * 109.48836 * 181.35059 * 20 19 18 22 22 N 1.46499 * 109.43294 * 301.31679 * 20 19 18 23 23 C 1.36940 * 119.99679 * 275.04806 * 22 20 19 24 24 H 1.07994 * 120.00216 * 359.97438 * 23 22 20 25 25 C 1.38808 * 119.99607 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99841 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00433 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.46835 * 89.99999 * 27 25 23 29 29 H 1.48497 * 109.47518 * 210.00114 * 27 25 23 30 30 H 1.48501 * 109.47190 * 330.00324 * 27 25 23 31 31 H 1.08995 * 109.46959 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47163 * 299.99776 * 1 2 3 33 33 H 1.09001 * 109.46908 * 60.00214 * 1 2 3 34 34 H 1.08996 * 109.47163 * 240.00224 * 2 1 3 35 35 H 1.09000 * 109.47210 * 120.00236 * 2 1 3 36 36 H 1.09006 * 109.58871 * 294.37340 * 5 3 2 37 37 H 1.08999 * 109.59055 * 54.65674 * 5 3 2 38 38 H 1.08002 * 120.46793 * 0.02562 * 10 9 7 39 39 H 1.07997 * 120.75608 * 180.24218 * 11 10 9 40 40 H 1.09006 * 115.55000 * 334.30654 * 13 12 11 41 41 H 1.08999 * 117.49770 * 359.97438 * 14 13 12 42 42 H 1.09004 * 117.50281 * 145.02200 * 14 13 12 43 43 H 1.08994 * 117.50320 * 252.50760 * 15 14 13 44 44 H 1.09000 * 117.51889 * 107.47385 * 15 14 13 45 45 H 1.08001 * 119.54660 * 180.02562 * 16 12 11 46 46 H 1.09000 * 109.58366 * 173.39583 * 18 6 5 47 47 H 1.08996 * 109.58667 * 293.67559 * 18 6 5 48 48 H 1.08995 * 109.49869 * 65.31864 * 19 18 6 49 49 H 1.09003 * 109.49920 * 185.37984 * 19 18 6 50 50 H 0.96997 * 119.99985 * 95.05176 * 22 20 19 51 51 H 0.97002 * 120.00386 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9819 -0.8417 5 6 1.6365 2.1274 1.3095 6 7 2.2429 3.4651 1.3500 7 6 1.4833 4.5572 1.5656 8 8 0.2722 4.4600 1.5890 9 6 2.1248 5.8765 1.7741 10 6 1.3424 7.0289 1.7986 11 6 1.9561 8.2551 1.9993 12 6 3.3329 8.2873 2.1582 13 6 4.0436 9.5986 2.3737 14 6 5.5731 9.5871 2.3401 15 6 4.8386 9.7667 3.6701 16 6 4.0492 7.1019 2.1174 17 7 3.4406 5.9510 1.9308 18 6 3.6934 3.5894 1.1514 19 6 4.0739 2.8880 -0.1563 20 6 3.5654 1.4450 -0.1241 21 1 3.8557 0.9365 -1.0434 22 7 4.1497 0.7479 1.0244 23 6 5.3876 0.1721 0.9185 24 1 5.9330 0.2316 -0.0117 25 6 5.9409 -0.4888 2.0065 26 7 7.1310 -1.0418 1.9049 27 14 4.9973 -0.5923 3.6153 28 1 4.1544 -1.8150 3.6169 29 1 5.9553 -0.6500 4.7484 30 1 4.1317 0.6057 3.7594 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.5511 2.2168 1.3558 37 1 1.9909 1.5375 2.1548 38 1 0.2722 6.9671 1.6672 39 1 1.3755 9.1654 2.0272 40 1 3.5377 10.4784 1.9759 41 1 6.0654 8.6310 2.1625 42 1 6.0739 10.4594 1.9200 43 1 4.8560 10.7570 4.1250 44 1 4.8472 8.9288 4.3673 45 1 5.1219 7.1233 2.2412 46 1 3.9653 4.6433 1.0933 47 1 4.2177 3.1223 1.9850 48 1 3.6209 3.4142 -0.9965 49 1 5.1582 2.8897 -0.2680 50 1 3.6596 0.6941 1.8597 51 1 7.5179 -1.5034 2.6653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037961539.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:07 Heat of formation + Delta-G solvation = 37.289861 kcal Electronic energy + Delta-G solvation = -30880.693233 eV Core-core repulsion = 26973.919514 eV Total energy + Delta-G solvation = -3906.773719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.11740 -40.83875 -39.29122 -37.98167 -36.04722 -35.42103 -33.68336 -33.49711 -32.15841 -31.47747 -30.04703 -27.30827 -25.64489 -25.20696 -25.00364 -24.69287 -23.14095 -22.24198 -21.92551 -21.36579 -20.06670 -19.82553 -18.51399 -18.15152 -17.14723 -16.79276 -16.72011 -16.38573 -16.14281 -15.99678 -15.71139 -15.51060 -15.06559 -14.96419 -14.92423 -14.62505 -14.50852 -14.28980 -14.21574 -13.83847 -13.70360 -13.23124 -12.97894 -12.88348 -12.74291 -12.68581 -12.46274 -12.35203 -12.15635 -12.07021 -12.00415 -11.88267 -11.64034 -11.55436 -11.40906 -11.25404 -11.18254 -10.97857 -10.79781 -9.94847 -9.92350 -9.61783 -9.21227 -7.99353 -5.29474 -0.47383 0.16373 1.34756 1.35230 1.41861 1.56840 1.88969 2.47504 2.62106 2.96579 3.09409 3.32718 3.49040 3.56401 3.60442 3.75256 3.84409 3.86954 3.93365 4.00624 4.01911 4.11805 4.20116 4.32409 4.34074 4.37246 4.41313 4.46604 4.57672 4.62740 4.68492 4.80788 4.85097 4.89495 4.93959 5.03225 5.03799 5.07337 5.09750 5.13273 5.21543 5.24592 5.27442 5.27892 5.32489 5.37822 5.47179 5.57610 5.75225 5.82846 6.24779 6.32352 6.61728 7.00949 7.11147 7.88160 8.07056 9.22723 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010724 B = 0.003521 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.217773 B = 7950.159632 C = 9640.335021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.093 4.093 4 H 0.088 0.912 5 C 0.116 3.884 6 N -0.585 5.585 7 C 0.563 3.437 8 O -0.570 6.570 9 C 0.048 3.952 10 C -0.106 4.106 11 C -0.068 4.068 12 C -0.070 4.070 13 C -0.124 4.124 14 C -0.174 4.174 15 C -0.165 4.165 16 C 0.081 3.919 17 N -0.461 5.461 18 C 0.088 3.912 19 C -0.143 4.143 20 C 0.177 3.823 21 H 0.050 0.950 22 N -0.741 5.741 23 C -0.212 4.212 24 H 0.062 0.938 25 C -0.057 4.057 26 N -0.983 5.983 27 Si 0.938 3.062 28 H -0.279 1.279 29 H -0.298 1.298 30 H -0.265 1.265 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.139 0.861 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.176 0.824 46 H 0.154 0.846 47 H 0.042 0.958 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.361 0.639 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 24.874 -0.729 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.113 4.113 4 H 0.106 0.894 5 C -0.006 4.006 6 N -0.314 5.314 7 C 0.351 3.649 8 O -0.451 6.451 9 C -0.088 4.088 10 C -0.127 4.127 11 C -0.094 4.094 12 C -0.072 4.072 13 C -0.143 4.143 14 C -0.210 4.210 15 C -0.201 4.201 16 C -0.078 4.078 17 N -0.173 5.173 18 C -0.034 4.034 19 C -0.183 4.183 20 C 0.069 3.931 21 H 0.068 0.932 22 N -0.385 5.385 23 C -0.343 4.343 24 H 0.080 0.920 25 C -0.248 4.248 26 N -0.635 5.635 27 Si 0.768 3.232 28 H -0.206 1.206 29 H -0.225 1.225 30 H -0.190 1.190 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.170 0.830 39 H 0.196 0.804 40 H 0.157 0.843 41 H 0.115 0.885 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.106 0.894 45 H 0.193 0.807 46 H 0.170 0.830 47 H 0.060 0.940 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.195 0.805 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.252 23.931 -0.839 26.458 hybrid contribution -0.252 -0.296 1.199 1.260 sum -11.504 23.635 0.360 26.289 Atomic orbital electron populations 1.21793 0.94380 1.02145 1.02069 1.21405 0.96434 0.94774 1.02144 1.21686 0.95283 0.96899 0.97418 0.89388 1.21699 0.99291 0.81940 0.97720 1.48062 1.09539 1.05934 1.67851 1.18317 0.85905 0.84011 0.76630 1.90705 1.14095 1.86011 1.54261 1.20996 0.90496 0.93850 1.03466 1.22203 1.02177 0.91643 0.96651 1.21790 0.93919 0.98441 0.95216 1.20625 0.94434 0.95569 0.96620 1.21085 0.94083 0.94869 1.04230 1.23205 0.92489 1.04551 1.00803 1.23118 1.02424 1.04147 0.90451 1.23244 1.01725 0.86952 0.95876 1.67478 1.09588 1.28934 1.11258 1.22879 0.77535 1.06258 0.96687 1.22403 1.01039 0.97479 0.97398 1.20429 0.91199 0.91328 0.90168 0.93219 1.42782 1.18269 1.65808 1.11595 1.19014 0.93091 1.24516 0.97660 0.91992 1.25243 0.97462 1.01310 1.00804 1.69847 1.18325 1.43585 1.31697 0.85661 0.78171 0.78313 0.81088 1.20566 1.22492 1.19013 0.91895 0.92915 0.91842 0.91604 0.93339 0.88713 0.93138 0.82967 0.80443 0.84331 0.88450 0.86560 0.86537 0.89407 0.80694 0.83006 0.93964 0.91285 0.92058 0.80548 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.67 71.98 0.70 -2.89 16 2 C -0.11 -3.32 5.19 30.60 0.16 -3.16 16 3 C -0.09 -2.96 2.14 -10.71 -0.02 -2.98 16 4 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 5 C 0.12 3.89 5.04 86.36 0.43 4.32 16 6 N -0.58 -19.82 2.97 -821.93 -2.44 -22.27 16 7 C 0.56 18.67 7.65 86.89 0.67 19.33 16 8 O -0.57 -20.71 15.79 -3.78 -0.06 -20.77 16 9 C 0.05 1.32 6.58 41.91 0.28 1.59 16 10 C -0.11 -2.21 9.63 22.61 0.22 -1.99 16 11 C -0.07 -0.97 9.88 22.45 0.22 -0.75 16 12 C -0.07 -1.04 5.63 -19.70 -0.11 -1.15 16 13 C -0.12 -1.14 6.06 -11.54 -0.07 -1.21 16 14 C -0.17 -1.50 9.87 30.59 0.30 -1.20 16 15 C -0.16 -1.45 10.17 30.59 0.31 -1.14 16 16 C 0.08 1.59 10.47 84.82 0.89 2.48 16 17 N -0.46 -12.18 6.12 -184.90 -1.13 -13.31 16 18 C 0.09 3.06 5.63 86.36 0.49 3.54 16 19 C -0.14 -4.97 5.78 30.67 0.18 -4.79 16 20 C 0.18 6.69 2.53 45.02 0.11 6.80 16 21 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 22 N -0.74 -34.01 3.53 -322.83 -1.14 -35.15 16 23 C -0.21 -11.82 10.41 84.03 0.87 -10.94 16 24 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 25 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 26 N -0.98 -62.97 13.97 21.65 0.30 -62.66 16 27 Si 0.94 46.74 27.73 68.60 1.90 48.64 16 28 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 29 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 30 H -0.26 -12.40 6.52 99.48 0.65 -11.75 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.29 6.70 -2.39 -0.02 1.28 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 1.68 7.70 -2.39 -0.02 1.66 16 36 H 0.09 3.07 5.72 -2.38 -0.01 3.06 16 37 H 0.05 1.85 6.65 -2.39 -0.02 1.83 16 38 H 0.15 2.98 7.67 -2.91 -0.02 2.96 16 39 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.10 0.95 6.19 -2.39 -0.01 0.93 16 42 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.18 2.80 6.03 -2.91 -0.02 2.78 16 46 H 0.15 4.84 4.01 -67.55 -0.27 4.57 16 47 H 0.04 1.72 7.75 -2.39 -0.02 1.70 16 48 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.36 16.58 3.81 -92.71 -0.35 16.23 16 51 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -71.85 394.82 3.79 -68.06 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.27 Total: 34.49 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 6.09 Total: 2.97 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -4.41 Total: -133.40 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.06 Total: -20.77 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.90 Total: 48.64 kcal Total: -71.85 3.79 -68.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037961539.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.349 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds