Wall clock time and date at job start Wed Apr 1 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 119.99448 * 2 1 4 4 N 1.46506 * 109.47038 * 125.98849 * 3 2 1 5 5 C 1.35526 * 125.67634 * 261.93682 * 4 3 2 6 6 C 1.35445 * 108.87332 * 180.02562 * 5 4 3 7 7 C 1.39841 * 107.86585 * 0.02562 * 6 5 4 8 8 C 1.37650 * 125.67653 * 81.96265 * 4 3 2 9 9 C 1.46681 * 126.23504 * 359.71561 * 8 4 3 10 10 O 1.21695 * 120.00085 * 8.48528 * 9 8 4 11 11 N 1.34775 * 119.99908 * 188.48571 * 9 8 4 12 12 C 1.47482 * 125.66023 * 0.51707 * 11 9 8 13 13 C 1.55239 * 104.79208 * 155.93294 * 12 11 9 14 14 C 1.54519 * 101.43886 * 36.66435 * 13 12 11 15 15 C 1.47175 * 125.66267 * 180.82923 * 11 9 8 16 16 C 1.52273 * 110.20343 * 83.42658 * 14 13 12 17 17 C 1.53310 * 109.41876 * 182.20150 * 16 14 13 18 18 N 1.46931 * 108.70808 * 306.48992 * 17 16 14 19 19 C 1.36939 * 120.56384 * 234.21119 * 18 17 16 20 20 H 1.07996 * 119.99603 * 31.92938 * 19 18 17 21 21 C 1.38811 * 119.99809 * 211.92324 * 19 18 17 22 22 N 1.31619 * 120.00046 * 10.34642 * 21 19 18 23 23 Si 1.86800 * 119.99759 * 190.34378 * 21 19 18 24 24 H 1.48496 * 109.47168 * 90.00455 * 23 21 19 25 25 H 1.48500 * 109.47245 * 210.00221 * 23 21 19 26 26 H 1.48500 * 109.47187 * 330.00394 * 23 21 19 27 27 C 1.46931 * 118.87212 * 54.23376 * 18 17 16 28 28 C 1.52277 * 110.20658 * 206.61456 * 14 13 12 29 29 H 1.08002 * 119.99103 * 180.02562 * 1 2 3 30 30 H 1.07992 * 120.00271 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00522 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47201 * 5.98486 * 3 2 1 33 33 H 1.09004 * 109.46889 * 245.98723 * 3 2 1 34 34 H 1.08000 * 125.56362 * 0.03011 * 5 4 3 35 35 H 1.07999 * 126.07030 * 180.02562 * 6 5 4 36 36 H 1.08002 * 126.45929 * 180.02562 * 7 6 5 37 37 H 1.09004 * 110.35471 * 274.87634 * 12 11 9 38 38 H 1.08998 * 110.35944 * 37.16784 * 12 11 9 39 39 H 1.09005 * 111.20412 * 278.57446 * 13 12 11 40 40 H 1.08999 * 110.95004 * 154.64652 * 13 12 11 41 41 H 1.09000 * 109.90841 * 300.83807 * 15 11 9 42 42 H 1.09003 * 109.90755 * 61.90882 * 15 11 9 43 43 H 1.09004 * 109.47597 * 302.18173 * 16 14 13 44 44 H 1.08996 * 109.47908 * 62.21561 * 16 14 13 45 45 H 1.08999 * 109.59863 * 186.72516 * 17 16 14 46 46 H 1.09001 * 109.60306 * 66.25565 * 17 16 14 47 47 H 0.97003 * 119.99510 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.60229 * 185.98946 * 27 18 17 49 49 H 1.09007 * 109.72931 * 65.59626 * 27 18 17 50 50 H 1.08994 * 109.48365 * 297.76950 * 28 14 13 51 51 H 1.08994 * 109.48073 * 57.79900 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0105 1.3224 1.1176 5 6 2.8042 1.9138 2.3195 6 6 3.8977 1.7224 3.0954 7 6 4.8258 0.9843 2.3543 8 6 4.2582 0.7410 1.1216 9 6 4.8701 -0.0061 0.0176 10 8 4.3329 -0.0274 -1.0742 11 7 6.0274 -0.6689 0.2122 12 6 6.7769 -0.7360 1.4806 13 6 7.6132 -2.0399 1.3782 14 6 7.9911 -2.0447 -0.1201 15 6 6.7563 -1.4404 -0.8074 16 6 9.2171 -1.1730 -0.3561 17 6 9.5430 -1.1464 -1.8539 18 7 9.6589 -2.5296 -2.3356 19 6 10.7848 -2.9452 -2.9951 20 1 11.7446 -2.5164 -2.7478 21 6 10.6922 -3.9176 -3.9814 22 7 9.5119 -4.2935 -4.4262 23 14 12.2429 -4.6926 -4.6772 24 1 12.5991 -5.8917 -3.8769 25 1 12.0068 -5.0915 -6.0880 26 1 13.3556 -3.7108 -4.6200 27 6 8.5462 -3.4593 -2.0980 28 6 8.2270 -3.4710 -0.5985 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3599 2.1308 0.1071 33 1 2.6073 1.4108 -0.9388 34 1 1.9132 2.4501 2.6110 35 1 4.0296 2.0770 4.1070 36 1 5.8026 0.6640 2.6855 37 1 7.4313 0.1300 1.5807 38 1 6.0896 -0.7924 2.3247 39 1 7.0137 -2.9139 1.6329 40 1 8.5028 -1.9825 2.0054 41 1 6.1206 -2.2363 -1.1953 42 1 7.0650 -0.7828 -1.6200 43 1 9.0144 -0.1593 -0.0101 44 1 10.0650 -1.5819 0.1932 45 1 10.4858 -0.6234 -2.0137 46 1 8.7440 -0.6374 -2.3930 47 1 9.4473 -4.9728 -5.1157 48 1 8.8318 -4.4611 -2.4189 49 1 7.6685 -3.1329 -2.6561 50 1 9.0648 -3.9039 -0.0520 51 1 7.3312 -4.0664 -0.4219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040729713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:27 Heat of formation + Delta-G solvation = 73.150661 kcal Electronic energy + Delta-G solvation = -30918.850787 eV Core-core repulsion = 27013.632109 eV Total energy + Delta-G solvation = -3905.218678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60769 -40.05041 -38.07616 -36.00165 -35.34365 -33.17584 -31.56499 -31.11101 -30.09599 -29.74810 -29.01599 -26.45378 -26.24733 -24.81775 -23.29046 -22.22085 -21.53452 -20.93821 -20.60867 -20.39166 -19.13067 -18.15170 -17.28951 -16.53619 -16.21875 -16.04734 -15.50023 -15.17921 -14.84170 -14.65556 -14.17823 -14.01907 -13.92119 -13.76563 -13.28705 -13.23357 -13.08774 -12.89706 -12.79174 -12.66561 -12.36868 -12.20872 -12.10001 -11.87317 -11.54329 -11.41690 -11.24228 -11.13147 -10.84149 -10.73823 -10.41366 -10.19716 -10.16528 -9.99412 -9.81116 -9.73050 -9.50697 -9.33671 -8.90900 -8.58035 -8.44525 -8.26710 -6.56961 -5.75431 -3.24136 1.42054 1.75741 2.61255 2.62730 3.30497 3.38434 3.39809 3.45107 3.46430 4.41731 4.45715 4.50603 4.57213 4.69884 4.81684 4.96108 4.98519 5.05322 5.21814 5.25783 5.34137 5.38042 5.42275 5.43714 5.52936 5.56502 5.69364 5.75798 5.90882 5.96494 5.98338 6.03669 6.13013 6.15718 6.19627 6.22743 6.28835 6.32855 6.37023 6.54374 6.62961 6.66962 6.69851 6.79406 6.85690 6.87166 7.01385 7.07467 7.40492 7.60671 7.73028 7.81554 8.24277 8.51198 9.25538 9.86879 10.45371 11.32212 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019838 B = 0.002581 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.105710 B =10844.426242 C =11658.174064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.127 3.873 4 N -0.406 5.406 5 C 0.012 3.988 6 C -0.209 4.209 7 C -0.157 4.157 8 C -0.039 4.039 9 C 0.596 3.404 10 O -0.550 6.550 11 N -0.601 5.601 12 C 0.088 3.912 13 C -0.129 4.129 14 C -0.055 4.055 15 C 0.123 3.877 16 C -0.118 4.118 17 C 0.143 3.857 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.063 0.937 21 C 0.004 3.996 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.170 3.830 28 C -0.127 4.127 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.165 0.835 35 H 0.141 0.859 36 H 0.157 0.843 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.018 0.982 47 H 0.254 0.746 48 H 0.088 0.912 49 H 0.019 0.981 50 H 0.060 0.940 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.120 10.458 16.781 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.179 4.179 3 C 0.006 3.994 4 N -0.079 5.079 5 C -0.123 4.123 6 C -0.234 4.234 7 C -0.183 4.183 8 C -0.153 4.153 9 C 0.385 3.615 10 O -0.430 6.430 11 N -0.334 5.334 12 C -0.035 4.035 13 C -0.167 4.167 14 C -0.056 4.056 15 C 0.001 3.999 16 C -0.158 4.158 17 C 0.017 3.983 18 N -0.313 5.313 19 C -0.382 4.382 20 H 0.081 0.919 21 C -0.195 4.195 22 N -0.548 5.548 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.044 3.956 28 C -0.166 4.166 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.183 0.817 35 H 0.159 0.841 36 H 0.174 0.826 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.036 0.964 47 H 0.064 0.936 48 H 0.107 0.893 49 H 0.037 0.963 50 H 0.079 0.921 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.727 10.354 15.694 23.883 hybrid contribution 0.674 -0.425 -0.354 0.872 sum -14.053 9.929 15.340 23.052 Atomic orbital electron populations 1.23870 0.95429 1.02278 0.99898 1.23093 0.96004 0.98484 1.00290 1.21159 0.91413 0.96646 0.90153 1.43958 1.12262 1.39568 1.12100 1.21978 1.01382 1.03506 0.85396 1.20837 0.94842 1.06965 1.00711 1.21975 1.01057 1.02700 0.92522 1.20050 0.88706 1.08983 0.97532 1.16594 0.79807 0.78650 0.86401 1.90803 1.62593 1.63621 1.25994 1.48204 1.21829 1.50219 1.13120 1.22907 0.94925 0.98810 0.86811 1.22971 0.99728 0.96584 0.97404 1.20976 0.93984 0.97484 0.93143 1.22151 0.92193 0.95022 0.90510 1.21919 0.96253 0.97420 1.00181 1.20974 0.98473 0.88090 0.90807 1.43986 1.17509 1.04424 1.65413 1.19171 0.86278 1.20270 1.12478 0.91890 1.25182 0.96424 1.01391 0.96466 1.69976 1.21772 1.32882 1.30193 0.86270 0.82819 0.79367 0.78155 1.21462 1.21731 1.20455 1.20830 0.89657 0.96839 0.88242 1.22122 1.00094 0.92709 1.01688 0.87802 0.88348 0.86709 0.88931 0.86697 0.81746 0.84131 0.82609 0.90970 0.89540 0.90739 0.89874 0.91240 0.90528 0.93116 0.91860 0.92780 0.96386 0.93618 0.89334 0.96329 0.92110 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 14.32 29.01 0.42 -1.01 16 2 C -0.16 -1.68 9.82 -36.02 -0.35 -2.03 16 3 C 0.13 1.32 5.87 -5.19 -0.03 1.29 16 4 N -0.41 -4.72 2.75 -114.15 -0.31 -5.03 16 5 C 0.01 0.12 11.36 -16.92 -0.19 -0.08 16 6 C -0.21 -2.02 10.81 -39.98 -0.43 -2.45 16 7 C -0.16 -1.75 9.14 -39.12 -0.36 -2.11 16 8 C -0.04 -0.53 6.83 -81.98 -0.56 -1.09 16 9 C 0.60 9.56 7.81 -12.85 -0.10 9.46 16 10 O -0.55 -10.38 15.15 5.19 0.08 -10.30 16 11 N -0.60 -8.99 3.33 -172.07 -0.57 -9.56 16 12 C 0.09 1.01 4.88 -2.32 -0.01 1.00 16 13 C -0.13 -1.56 6.00 -24.75 -0.15 -1.71 16 14 C -0.06 -0.87 0.53 -154.09 -0.08 -0.95 16 15 C 0.12 2.09 5.05 -3.31 -0.02 2.07 16 16 C -0.12 -1.95 4.78 -26.94 -0.13 -2.08 16 17 C 0.14 2.96 6.22 -3.65 -0.02 2.94 16 18 N -0.59 -14.57 2.97 -172.16 -0.51 -15.08 16 19 C -0.25 -6.86 9.57 -15.06 -0.14 -7.00 16 20 H 0.06 1.69 7.85 -52.49 -0.41 1.27 16 21 C 0.00 0.11 5.05 -17.43 -0.09 0.02 16 22 N -0.90 -26.24 11.05 55.49 0.61 -25.63 16 23 Si 0.90 21.68 29.57 -169.99 -5.03 16.66 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.17 3.98 4.99 -3.64 -0.02 3.96 16 28 C -0.13 -2.31 4.71 -26.93 -0.13 -2.43 16 29 H 0.10 0.76 8.06 -52.49 -0.42 0.33 16 30 H 0.10 0.61 7.84 -52.49 -0.41 0.20 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.09 0.67 7.77 -51.93 -0.40 0.27 16 33 H 0.12 1.44 6.64 -51.93 -0.34 1.09 16 34 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.47 4.74 -52.49 -0.25 1.22 16 37 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 38 H 0.09 0.85 5.48 -51.93 -0.28 0.57 16 39 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 40 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 41 H 0.07 1.29 7.59 -51.93 -0.39 0.89 16 42 H 0.08 1.47 6.08 -51.93 -0.32 1.16 16 43 H 0.05 0.74 7.47 -51.93 -0.39 0.35 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 46 H 0.02 0.39 6.53 -51.93 -0.34 0.06 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.09 2.35 6.09 -51.93 -0.32 2.03 16 49 H 0.02 0.47 7.47 -51.92 -0.39 0.08 16 50 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 51 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 391.86 15.07 5.91 5.91 Total: -1.00 -32.06 391.86 -10.20 -42.26 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.97 Total: 3.00 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.40 Total: -2.21 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.78 Total: -55.30 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.06 -10.20 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040729713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.407 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds