Wall clock time and date at job start Wed Apr 1 2020 03:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.69742 * 2 1 4 4 C 1.53188 * 109.58522 * 239.62710 * 2 1 3 5 5 C 1.53044 * 109.31241 * 185.56128 * 4 2 1 6 6 H 1.09001 * 109.46433 * 301.37852 * 5 4 2 7 7 N 1.46501 * 109.46106 * 181.39887 * 5 4 2 8 8 C 1.36935 * 119.99579 * 154.97489 * 7 5 4 9 9 H 1.07990 * 120.00465 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99817 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99692 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00298 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46920 * 59.99792 * 12 10 8 14 14 H 1.48506 * 109.47048 * 300.00226 * 12 10 8 15 15 H 1.48495 * 109.47245 * 180.02562 * 12 10 8 16 16 C 1.53046 * 109.52449 * 61.39023 * 5 4 2 17 17 C 1.53189 * 109.31089 * 298.62752 * 16 5 4 18 18 N 1.46928 * 108.77632 * 54.63512 * 17 16 5 19 19 C 1.34783 * 120.63130 * 126.37307 * 18 17 16 20 20 O 1.21515 * 120.00029 * 174.20441 * 19 18 17 21 21 C 1.48172 * 119.99665 * 354.20143 * 19 18 17 22 22 C 1.39177 * 119.81926 * 206.16461 * 21 19 18 23 23 C 1.39000 * 119.24976 * 179.88613 * 22 21 19 24 24 C 1.37864 * 118.56182 * 359.94609 * 23 22 21 25 25 C 1.39125 * 119.06898 * 0.19456 * 24 23 22 26 26 N 1.31319 * 121.19883 * 359.54098 * 25 24 23 27 27 C 1.50494 * 122.48267 * 180.35007 * 24 23 22 28 28 C 1.52790 * 110.48379 * 342.27108 * 27 24 23 29 29 C 1.53309 * 108.50158 * 51.12469 * 28 27 24 30 30 C 1.50359 * 118.61361 * 179.74325 * 23 22 21 31 31 H 1.09001 * 109.47306 * 310.44564 * 1 2 3 32 32 H 1.08999 * 109.47484 * 70.44696 * 1 2 3 33 33 H 1.09003 * 109.47184 * 190.44800 * 1 2 3 34 34 H 1.09006 * 109.48595 * 65.62441 * 4 2 1 35 35 H 1.08998 * 109.51219 * 305.52202 * 4 2 1 36 36 H 0.97002 * 120.00168 * 334.98123 * 7 5 4 37 37 H 0.97000 * 120.00371 * 359.97438 * 11 10 8 38 38 H 1.08996 * 109.49878 * 58.57750 * 16 5 4 39 39 H 1.09000 * 109.49456 * 178.67922 * 16 5 4 40 40 H 1.08999 * 109.59038 * 174.42129 * 17 16 5 41 41 H 1.09006 * 109.59119 * 294.70668 * 17 16 5 42 42 H 1.07998 * 120.37092 * 359.90744 * 22 21 19 43 43 H 1.07997 * 119.39905 * 179.83393 * 25 24 23 44 44 H 1.09001 * 109.29776 * 221.96330 * 27 24 23 45 45 H 1.09004 * 109.30249 * 102.58442 * 27 24 23 46 46 H 1.08996 * 109.63146 * 291.41994 * 28 27 24 47 47 H 1.09003 * 109.63125 * 170.83022 * 28 27 24 48 48 H 1.09007 * 109.63749 * 170.47105 * 29 28 27 49 49 H 1.08997 * 109.64549 * 49.84924 * 29 28 27 50 50 H 1.09001 * 109.30015 * 283.02554 * 30 23 22 51 51 H 1.08995 * 109.30321 * 42.61621 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7297 -1.2452 5 6 3.5675 -0.8480 -1.1701 6 1 4.0060 0.1474 -1.0991 7 7 4.0652 -1.5158 -2.3753 8 6 5.3494 -1.2981 -2.7977 9 1 5.9955 -0.6345 -2.2423 10 6 5.8209 -1.9305 -3.9400 11 7 5.0334 -2.7389 -4.6172 12 14 7.5726 -1.6331 -4.5168 13 1 8.5216 -2.0551 -3.4554 14 1 7.7608 -0.1881 -4.8031 15 1 7.8276 -2.4189 -5.7507 16 6 3.9569 -1.6657 0.0636 17 6 3.4650 -0.9469 1.3238 18 7 2.0225 -0.6995 1.1945 19 6 1.1672 -1.1069 2.1533 20 8 -0.0080 -0.8051 2.0873 21 6 1.6601 -1.9227 3.2877 22 6 0.7897 -2.7816 3.9522 23 6 1.2652 -3.5432 5.0133 24 6 2.5910 -3.4202 5.3709 25 6 3.4029 -2.5393 4.6636 26 7 2.9306 -1.8344 3.6613 27 6 3.2000 -4.2073 6.4997 28 6 2.1088 -4.7667 7.4112 29 6 1.0785 -5.4991 6.5438 30 6 0.3110 -4.4620 5.7247 31 1 -0.3634 0.6667 0.7821 32 1 -0.3634 0.3439 -0.9684 33 1 -0.3634 -1.0106 0.1864 34 1 1.7658 -0.1673 -2.1367 35 1 1.6031 -1.7258 -1.2909 36 1 3.4850 -2.1122 -2.8740 37 1 4.1237 -2.8931 -4.3179 38 1 3.4983 -2.6528 0.0054 39 1 5.0412 -1.7695 0.1038 40 1 3.6517 -1.5717 2.1972 41 1 3.9921 0.0010 1.4331 42 1 -0.2435 -2.8558 3.6465 43 1 4.4416 -2.4367 4.9409 44 1 3.8556 -3.5575 7.0794 45 1 3.7847 -5.0311 6.0902 46 1 1.6234 -3.9499 7.9453 47 1 2.5489 -5.4638 8.1243 48 1 0.3856 -6.0474 7.1822 49 1 1.5890 -6.1905 5.8735 50 1 -0.3249 -3.8769 6.3890 51 1 -0.3102 -4.9749 4.9906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044676021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:54 Heat of formation + Delta-G solvation = 21.487433 kcal Electronic energy + Delta-G solvation = -30551.340389 eV Core-core repulsion = 26643.881426 eV Total energy + Delta-G solvation = -3907.458963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34627 -39.98112 -37.49763 -37.15353 -34.70275 -33.21394 -32.86104 -32.00786 -31.27506 -29.84902 -28.90260 -26.92348 -25.03683 -24.40466 -23.77846 -23.09504 -22.81139 -22.01537 -20.67447 -19.91820 -19.03541 -17.40658 -17.21614 -16.70979 -16.17022 -15.73229 -15.63923 -15.26223 -15.00591 -14.76315 -14.34827 -14.31509 -14.09919 -13.72164 -13.55114 -13.48492 -13.37567 -13.11821 -12.99293 -12.74144 -12.59764 -12.49847 -12.07333 -11.90313 -11.69399 -11.43894 -11.37860 -11.16289 -11.01457 -10.81742 -10.71724 -10.52969 -10.47343 -10.05872 -9.96700 -9.78159 -9.50386 -9.24102 -9.14819 -8.96172 -8.72161 -8.34825 -7.00295 -6.07793 -3.07259 0.49013 0.91206 2.64452 2.99902 3.52326 3.55942 3.56395 3.73508 3.98497 4.13674 4.19503 4.41322 4.45818 4.48229 4.67820 4.68200 4.87680 4.97859 5.04132 5.10357 5.14894 5.17405 5.27580 5.35649 5.36833 5.43078 5.47428 5.50041 5.51809 5.61173 5.62595 5.67905 5.74358 5.76324 5.82965 5.89642 5.96030 6.01892 6.08650 6.16829 6.25868 6.38321 6.43481 6.47255 6.50357 6.61906 6.76601 6.94520 7.07633 7.46770 7.60224 7.83091 8.22311 8.77831 9.25431 10.11908 10.27649 11.40659 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.002694 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.494207 B =10392.179331 C =11732.693567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.144 3.856 3 H 0.073 0.927 4 C -0.134 4.134 5 C 0.183 3.817 6 H 0.048 0.952 7 N -0.736 5.736 8 C -0.328 4.328 9 H 0.064 0.936 10 C -0.047 4.047 11 N -0.945 5.945 12 Si 1.079 2.921 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.285 1.285 16 C -0.148 4.148 17 C 0.071 3.929 18 N -0.579 5.579 19 C 0.568 3.432 20 O -0.536 6.536 21 C 0.080 3.920 22 C -0.113 4.113 23 C -0.040 4.040 24 C -0.112 4.112 25 C 0.096 3.904 26 N -0.447 5.447 27 C -0.080 4.080 28 C -0.121 4.121 29 C -0.121 4.121 30 C -0.084 4.084 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.366 0.634 37 H 0.255 0.745 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.139 0.861 41 H 0.063 0.937 42 H 0.144 0.856 43 H 0.163 0.837 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 -2.670 26.288 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.091 0.909 4 C -0.173 4.173 5 C 0.073 3.927 6 H 0.066 0.934 7 N -0.378 5.378 8 C -0.459 4.459 9 H 0.082 0.918 10 C -0.244 4.244 11 N -0.591 5.591 12 Si 0.910 3.090 13 H -0.223 1.223 14 H -0.223 1.223 15 H -0.211 1.211 16 C -0.189 4.189 17 C -0.051 4.051 18 N -0.310 5.310 19 C 0.355 3.645 20 O -0.414 6.414 21 C -0.055 4.055 22 C -0.134 4.134 23 C -0.048 4.048 24 C -0.114 4.114 25 C -0.064 4.064 26 N -0.158 5.158 27 C -0.117 4.117 28 C -0.158 4.158 29 C -0.159 4.159 30 C -0.121 4.121 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.199 0.801 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.155 0.845 41 H 0.081 0.919 42 H 0.162 0.838 43 H 0.180 0.820 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.102 0.898 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.013 -2.143 24.645 25.712 hybrid contribution -1.564 -0.301 1.319 2.068 sum -8.577 -2.444 25.963 27.452 Atomic orbital electron populations 1.22176 0.92902 1.03807 1.00397 1.21357 0.95392 0.95297 0.83795 0.90940 1.22300 0.97750 1.00745 0.96544 1.20148 0.90620 0.95065 0.86906 0.93404 1.42447 1.13012 1.54778 1.27550 1.20033 0.89632 1.26139 1.10100 0.91796 1.25759 1.06261 0.97705 0.94687 1.70873 1.08153 1.38565 1.41482 0.83251 0.74187 0.75460 0.76079 1.22305 1.22294 1.21084 1.22628 1.01549 0.99584 0.95171 1.23005 0.78050 1.02082 1.01999 1.48099 1.08397 1.55261 1.19219 1.17907 0.85396 0.79523 0.81682 1.90818 1.16726 1.57298 1.76588 1.21258 0.89905 0.97305 0.97079 1.22031 1.01266 0.95144 0.94953 1.19865 0.94030 0.96161 0.94756 1.20718 0.93883 0.98245 0.98536 1.23002 1.00424 0.92200 0.90736 1.67499 1.13083 1.22592 1.12656 1.20450 0.98016 0.99171 0.94075 1.21570 0.96455 1.00190 0.97629 1.21587 0.98213 0.97512 0.98565 1.20504 0.96534 0.95992 0.99055 0.91249 0.93607 0.91373 0.90699 0.92032 0.80120 0.93411 0.92949 0.90864 0.84479 0.91899 0.83782 0.82031 0.90056 0.89882 0.91475 0.91024 0.91000 0.91310 0.89795 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 7.64 37.16 0.28 -1.76 16 2 C 0.14 2.29 3.49 -67.60 -0.24 2.05 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.13 -2.39 4.82 -26.61 -0.13 -2.51 16 5 C 0.18 3.75 2.73 -67.88 -0.19 3.57 16 6 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 7 N -0.74 -18.75 5.12 -53.38 -0.27 -19.02 16 8 C -0.33 -9.28 9.93 -15.06 -0.15 -9.43 16 9 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.05 -1.37 5.50 -17.43 -0.10 -1.47 16 11 N -0.95 -29.61 13.70 55.49 0.76 -28.85 16 12 Si 1.08 26.15 29.92 -169.99 -5.09 21.07 16 13 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 C -0.15 -2.77 5.66 -26.61 -0.15 -2.92 16 17 C 0.07 1.12 6.11 -3.71 -0.02 1.09 16 18 N -0.58 -9.22 2.97 -166.20 -0.49 -9.72 16 19 C 0.57 9.03 7.36 -12.18 -0.09 8.94 16 20 O -0.54 -9.17 12.20 5.35 0.07 -9.11 16 21 C 0.08 1.11 6.45 -83.05 -0.54 0.57 16 22 C -0.11 -1.31 9.26 -38.95 -0.36 -1.67 16 23 C -0.04 -0.38 5.74 -104.64 -0.60 -0.98 16 24 C -0.11 -0.96 5.75 -104.53 -0.60 -1.56 16 25 C 0.10 0.95 10.79 -17.44 -0.19 0.76 16 26 N -0.45 -5.70 6.41 -9.73 -0.06 -5.76 16 27 C -0.08 -0.45 5.71 -28.09 -0.16 -0.61 16 28 C -0.12 -0.59 5.97 -26.68 -0.16 -0.75 16 29 C -0.12 -0.64 5.98 -26.66 -0.16 -0.80 16 30 C -0.08 -0.55 5.71 -28.14 -0.16 -0.71 16 31 H 0.07 1.07 6.90 -51.93 -0.36 0.71 16 32 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.07 1.11 6.57 -51.93 -0.34 0.77 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.37 9.70 6.63 -40.82 -0.27 9.43 16 37 H 0.25 7.88 6.77 -40.82 -0.28 7.61 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.14 2.04 3.84 -81.78 -0.31 1.73 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.14 1.58 7.86 -52.49 -0.41 1.17 16 43 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 47 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 49 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -33.44 390.79 -11.26 -44.70 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -8.36 Total: 9.01 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -3.70 Total: -8.20 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.07 Total: -63.36 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -5.09 Total: 21.07 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.44 -11.26 -44.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044676021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.183 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds