Wall clock time and date at job start Wed Apr 1 2020 03:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.58459 * 2 1 4 4 C 1.53189 * 109.58438 * 120.28304 * 2 1 3 5 5 C 1.53042 * 109.31205 * 174.56746 * 4 2 1 6 6 H 1.08998 * 109.46115 * 178.63130 * 5 4 2 7 7 N 1.46498 * 109.46193 * 58.65104 * 5 4 2 8 8 C 1.36937 * 119.99818 * 154.97381 * 7 5 4 9 9 H 1.08001 * 120.00346 * 359.72665 * 8 7 5 10 10 C 1.38817 * 119.99603 * 180.02562 * 8 7 5 11 11 N 1.31613 * 120.00382 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99724 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46896 * 90.00094 * 12 10 8 14 14 H 1.48496 * 109.47244 * 210.00053 * 12 10 8 15 15 H 1.48502 * 109.47179 * 330.00170 * 12 10 8 16 16 C 1.53049 * 109.52314 * 298.64070 * 5 4 2 17 17 C 1.53164 * 109.32621 * 61.37667 * 16 5 4 18 18 N 1.46921 * 109.70197 * 239.64499 * 2 1 3 19 19 C 1.34770 * 120.63252 * 6.51075 * 18 2 1 20 20 O 1.21511 * 120.00281 * 7.00811 * 19 18 2 21 21 C 1.48176 * 119.99899 * 187.00199 * 19 18 2 22 22 C 1.39179 * 119.81774 * 201.26737 * 21 19 18 23 23 C 1.38999 * 119.24940 * 179.97438 * 22 21 19 24 24 C 1.37869 * 118.55505 * 359.75517 * 23 22 21 25 25 C 1.39121 * 119.07462 * 0.36198 * 24 23 22 26 26 N 1.31317 * 121.19604 * 359.49689 * 25 24 23 27 27 C 1.50498 * 122.47844 * 180.64733 * 24 23 22 28 28 C 1.52793 * 110.47012 * 341.93885 * 27 24 23 29 29 C 1.53306 * 108.51014 * 51.20800 * 28 27 24 30 30 C 1.50350 * 118.62599 * 179.42149 * 23 22 21 31 31 H 1.09007 * 109.47286 * 292.34394 * 1 2 3 32 32 H 1.09000 * 109.47166 * 52.34256 * 1 2 3 33 33 H 1.09001 * 109.47123 * 172.34468 * 1 2 3 34 34 H 1.09003 * 109.49903 * 54.61472 * 4 2 1 35 35 H 1.09000 * 109.52745 * 294.52957 * 4 2 1 36 36 H 0.96999 * 120.00415 * 334.98147 * 7 5 4 37 37 H 0.97000 * 120.00201 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.49340 * 181.30939 * 16 5 4 39 39 H 1.08998 * 109.49878 * 301.40293 * 16 5 4 40 40 H 1.09002 * 109.58964 * 185.57143 * 17 16 5 41 41 H 1.08990 * 109.71444 * 65.20660 * 17 16 5 42 42 H 1.08000 * 120.37441 * 0.02562 * 22 21 19 43 43 H 1.08003 * 119.40028 * 179.76121 * 25 24 23 44 44 H 1.09002 * 109.30013 * 102.23921 * 27 24 23 45 45 H 1.09000 * 109.30627 * 221.62858 * 27 24 23 46 46 H 1.09002 * 109.63026 * 170.91340 * 28 27 24 47 47 H 1.08996 * 109.63308 * 291.50109 * 28 27 24 48 48 H 1.09006 * 109.63971 * 49.92924 * 29 28 27 49 49 H 1.09004 * 109.63266 * 170.32638 * 29 28 27 50 50 H 1.08996 * 109.30580 * 282.92112 * 30 23 22 51 51 H 1.08998 * 109.30403 * 42.31274 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5678 -0.8433 1.1730 6 1 3.9380 -1.3393 2.0702 7 7 4.1547 0.4956 1.0778 8 6 5.4380 0.7124 1.5039 9 1 6.0158 -0.1026 1.9140 10 6 5.9939 1.9812 1.4142 11 7 5.2876 2.9759 0.9202 12 14 7.7442 2.2773 1.9960 13 1 8.6847 2.0562 0.8683 14 1 7.8745 3.6741 2.4827 15 1 8.0648 1.3366 3.0995 16 6 3.9600 -1.6607 -0.0601 17 6 3.4686 -0.9435 -1.3210 18 7 2.0253 -0.6990 -1.1936 19 6 1.1721 -1.1085 -2.1531 20 8 0.0004 -0.7911 -2.1001 21 6 1.6629 -1.9459 -3.2727 22 6 0.9417 -2.0035 -4.4617 23 6 1.4132 -2.7923 -5.5045 24 6 2.5887 -3.4897 -5.3239 25 6 3.2558 -3.3868 -4.1074 26 7 2.7907 -2.6325 -3.1383 27 6 3.1864 -4.3581 -6.3980 28 6 2.1375 -4.6977 -7.4558 29 6 1.4752 -3.3954 -7.9201 30 6 0.6162 -2.8547 -6.7778 31 1 -0.3634 0.3907 0.9506 32 1 -0.3633 0.6278 -0.8136 33 1 -0.3633 -1.0185 -0.1369 34 1 1.6049 -1.7246 1.2921 35 1 1.7638 -0.1659 2.1375 36 1 3.6344 1.2285 0.7132 37 1 5.6762 3.8624 0.8573 38 1 5.0446 -1.7624 -0.0991 39 1 3.5034 -2.6487 -0.0019 40 1 3.6576 -1.5683 -2.1940 41 1 3.9917 0.0062 -1.4313 42 1 0.0265 -1.4410 -4.5730 43 1 4.1751 -3.9339 -3.9588 44 1 4.0151 -3.8294 -6.8690 45 1 3.5586 -5.2797 -5.9506 46 1 2.6173 -5.1870 -8.3034 47 1 1.3846 -5.3584 -7.0261 48 1 2.2428 -2.6658 -8.1784 49 1 0.8499 -3.5928 -8.7909 50 1 -0.2437 -3.5086 -6.6330 51 1 0.2657 -1.8546 -7.0329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044676022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:58 Heat of formation + Delta-G solvation = 23.800250 kcal Electronic energy + Delta-G solvation = -30968.431297 eV Core-core repulsion = 27061.072624 eV Total energy + Delta-G solvation = -3907.358672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.20194 -39.81983 -37.43821 -37.03421 -34.13593 -33.09633 -32.64986 -31.81263 -31.13827 -29.71158 -28.91027 -26.88797 -24.95080 -24.31060 -23.73236 -23.24282 -22.97607 -21.86412 -20.69399 -19.49634 -18.40186 -17.17838 -17.04695 -16.57960 -16.04527 -15.81448 -15.31943 -14.98526 -14.82584 -14.39323 -14.27731 -14.20471 -13.87877 -13.80972 -13.71846 -13.32566 -13.09571 -12.96636 -12.86697 -12.53110 -12.47628 -12.22976 -11.89952 -11.83732 -11.52478 -11.31560 -11.22258 -10.99046 -10.94152 -10.86742 -10.71548 -10.48305 -10.42680 -10.19144 -9.89024 -9.64917 -9.56676 -9.29794 -9.06494 -8.91768 -8.59428 -8.00445 -6.90841 -5.73283 -3.01291 0.60441 1.03612 2.81340 3.25909 3.44823 3.50273 3.51804 3.73843 4.14058 4.23605 4.29080 4.47206 4.56533 4.58890 4.62298 4.80860 4.96942 5.06954 5.10874 5.24489 5.28115 5.39063 5.42519 5.44444 5.51087 5.54261 5.56500 5.59828 5.68818 5.71936 5.74215 5.85025 5.88883 5.94701 5.95770 6.05948 6.09173 6.13348 6.28719 6.36029 6.40162 6.55593 6.63472 6.68785 6.77651 6.85179 6.91954 7.03189 7.22717 7.64689 7.73698 7.87210 8.45176 8.45485 9.56545 10.14917 10.49876 11.49458 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.002917 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.981750 B = 9597.201154 C =10736.160459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.143 3.857 3 H 0.081 0.919 4 C -0.131 4.131 5 C 0.171 3.829 6 H 0.048 0.952 7 N -0.722 5.722 8 C -0.234 4.234 9 H 0.070 0.930 10 C -0.014 4.014 11 N -0.934 5.934 12 Si 0.905 3.095 13 H -0.291 1.291 14 H -0.293 1.293 15 H -0.283 1.283 16 C -0.138 4.138 17 C 0.081 3.919 18 N -0.573 5.573 19 C 0.565 3.435 20 O -0.541 6.541 21 C 0.081 3.919 22 C -0.114 4.114 23 C -0.043 4.043 24 C -0.114 4.114 25 C 0.095 3.905 26 N -0.441 5.441 27 C -0.079 4.079 28 C -0.121 4.121 29 C -0.121 4.121 30 C -0.083 4.083 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.129 0.871 41 H 0.070 0.930 42 H 0.144 0.856 43 H 0.161 0.839 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.083 0.917 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.589 -16.079 -17.158 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.040 3.960 3 H 0.099 0.901 4 C -0.170 4.170 5 C 0.061 3.939 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.366 4.366 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.582 5.582 12 Si 0.736 3.264 13 H -0.219 1.219 14 H -0.219 1.219 15 H -0.209 1.209 16 C -0.179 4.179 17 C -0.041 4.041 18 N -0.303 5.303 19 C 0.351 3.649 20 O -0.420 6.420 21 C -0.055 4.055 22 C -0.135 4.135 23 C -0.051 4.051 24 C -0.116 4.116 25 C -0.065 4.065 26 N -0.152 5.152 27 C -0.116 4.116 28 C -0.158 4.158 29 C -0.158 4.158 30 C -0.120 4.120 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.145 0.855 41 H 0.088 0.912 42 H 0.162 0.838 43 H 0.178 0.822 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.101 0.899 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.602 -15.792 -16.191 24.198 hybrid contribution 0.670 0.490 -0.408 0.925 sum -7.932 -15.302 -16.599 23.929 Atomic orbital electron populations 1.22174 0.93381 1.03088 1.00621 1.21298 0.94703 0.96207 0.83771 0.90127 1.22220 0.97606 1.00103 0.97080 1.20253 0.90306 0.88111 0.95276 0.93366 1.42500 1.13824 1.04747 1.75357 1.19241 0.89947 0.94083 1.33288 0.91249 1.24714 0.98207 0.95926 1.02177 1.69654 1.36377 1.00562 1.51638 0.86225 0.84930 0.77027 0.78218 1.21858 1.21919 1.20862 1.22350 1.00943 0.97868 0.96713 1.22731 0.77649 1.02183 1.01550 1.48048 1.08486 1.54780 1.18974 1.17910 0.85481 0.79906 0.81595 1.90794 1.17073 1.57965 1.76153 1.21338 0.92032 0.97458 0.94650 1.22059 1.00692 0.98554 0.92151 1.19842 0.94503 0.94832 0.95889 1.20712 0.95436 0.98585 0.96847 1.23006 0.99571 0.95323 0.88611 1.67590 1.10851 1.05726 1.31046 1.20439 0.98285 0.98616 0.94296 1.21567 0.98347 0.97551 0.98360 1.21573 0.99420 0.97453 0.97374 1.20479 0.97692 1.02641 0.91184 0.93788 0.90906 0.92107 0.92188 0.90818 0.78222 0.93601 0.91294 0.93370 0.85494 0.91170 0.83782 0.82171 0.89993 0.90126 0.91113 0.91492 0.91387 0.91090 0.89901 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 7.62 37.16 0.28 -1.99 16 2 C 0.14 2.60 3.19 -67.60 -0.22 2.38 16 3 H 0.08 1.65 6.64 -51.93 -0.34 1.30 16 4 C -0.13 -2.33 5.07 -26.61 -0.13 -2.47 16 5 C 0.17 3.43 3.10 -67.88 -0.21 3.22 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.72 -17.75 4.31 -53.38 -0.23 -17.98 16 8 C -0.23 -6.40 9.93 -15.06 -0.15 -6.55 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 11 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 12 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.14 -2.53 5.78 -26.62 -0.15 -2.68 16 17 C 0.08 1.47 5.87 -3.72 -0.02 1.45 16 18 N -0.57 -10.31 2.97 -166.22 -0.49 -10.80 16 19 C 0.56 9.86 7.38 -12.18 -0.09 9.77 16 20 O -0.54 -10.05 12.15 5.36 0.07 -9.98 16 21 C 0.08 1.21 6.43 -83.06 -0.53 0.68 16 22 C -0.11 -1.42 9.26 -38.95 -0.36 -1.78 16 23 C -0.04 -0.43 5.74 -104.64 -0.60 -1.03 16 24 C -0.11 -1.06 5.75 -104.53 -0.60 -1.67 16 25 C 0.10 1.03 10.79 -17.44 -0.19 0.84 16 26 N -0.44 -6.18 6.49 -9.73 -0.06 -6.25 16 27 C -0.08 -0.50 5.71 -28.09 -0.16 -0.66 16 28 C -0.12 -0.65 5.97 -26.68 -0.16 -0.81 16 29 C -0.12 -0.69 5.98 -26.67 -0.16 -0.85 16 30 C -0.08 -0.59 5.72 -28.15 -0.16 -0.75 16 31 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.07 1.29 6.68 -51.93 -0.35 0.94 16 33 H 0.06 1.05 6.83 -51.93 -0.35 0.69 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.38 10.07 6.06 -40.82 -0.25 9.83 16 37 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.13 2.15 3.87 -78.73 -0.30 1.85 16 41 H 0.07 1.50 7.74 -51.93 -0.40 1.10 16 42 H 0.14 1.72 7.79 -52.49 -0.41 1.31 16 43 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 48 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -31.53 388.26 -11.17 -42.70 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -8.29 Total: 9.86 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -3.71 Total: -3.38 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.06 Total: -62.39 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.53 -11.17 -42.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044676022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.497 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds