Wall clock time and date at job start Wed Apr 1 2020 03:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.58459 * 2 1 4 4 C 1.53189 * 109.58438 * 120.28304 * 2 1 3 5 5 C 1.53042 * 109.31205 * 174.56746 * 4 2 1 6 6 H 1.08998 * 109.46115 * 178.63130 * 5 4 2 7 7 N 1.46498 * 109.46193 * 58.65104 * 5 4 2 8 8 C 1.36937 * 119.99818 * 154.97381 * 7 5 4 9 9 H 1.08001 * 120.00346 * 359.72665 * 8 7 5 10 10 C 1.38817 * 119.99603 * 180.02562 * 8 7 5 11 11 N 1.31613 * 120.00382 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99724 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46896 * 90.00094 * 12 10 8 14 14 H 1.48496 * 109.47244 * 210.00053 * 12 10 8 15 15 H 1.48502 * 109.47179 * 330.00170 * 12 10 8 16 16 C 1.53049 * 109.52314 * 298.64070 * 5 4 2 17 17 C 1.53164 * 109.32621 * 61.37667 * 16 5 4 18 18 N 1.46921 * 109.70197 * 239.64499 * 2 1 3 19 19 C 1.34770 * 120.63252 * 6.51075 * 18 2 1 20 20 O 1.21511 * 120.00281 * 7.00811 * 19 18 2 21 21 C 1.48176 * 119.99899 * 187.00199 * 19 18 2 22 22 C 1.39179 * 119.81774 * 201.26737 * 21 19 18 23 23 C 1.38999 * 119.24940 * 179.97438 * 22 21 19 24 24 C 1.37869 * 118.55505 * 359.75517 * 23 22 21 25 25 C 1.39121 * 119.07462 * 0.36198 * 24 23 22 26 26 N 1.31317 * 121.19604 * 359.49689 * 25 24 23 27 27 C 1.50498 * 122.47844 * 180.64733 * 24 23 22 28 28 C 1.52793 * 110.47012 * 341.93885 * 27 24 23 29 29 C 1.53306 * 108.51014 * 51.20800 * 28 27 24 30 30 C 1.50350 * 118.62599 * 179.42149 * 23 22 21 31 31 H 1.09007 * 109.47286 * 292.34394 * 1 2 3 32 32 H 1.09000 * 109.47166 * 52.34256 * 1 2 3 33 33 H 1.09001 * 109.47123 * 172.34468 * 1 2 3 34 34 H 1.09003 * 109.49903 * 54.61472 * 4 2 1 35 35 H 1.09000 * 109.52745 * 294.52957 * 4 2 1 36 36 H 0.96999 * 120.00415 * 334.98147 * 7 5 4 37 37 H 0.97000 * 120.00201 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.49340 * 181.30939 * 16 5 4 39 39 H 1.08998 * 109.49878 * 301.40293 * 16 5 4 40 40 H 1.09002 * 109.58964 * 185.57143 * 17 16 5 41 41 H 1.08990 * 109.71444 * 65.20660 * 17 16 5 42 42 H 1.08000 * 120.37441 * 0.02562 * 22 21 19 43 43 H 1.08003 * 119.40028 * 179.76121 * 25 24 23 44 44 H 1.09002 * 109.30013 * 102.23921 * 27 24 23 45 45 H 1.09000 * 109.30627 * 221.62858 * 27 24 23 46 46 H 1.09002 * 109.63026 * 170.91340 * 28 27 24 47 47 H 1.08996 * 109.63308 * 291.50109 * 28 27 24 48 48 H 1.09006 * 109.63971 * 49.92924 * 29 28 27 49 49 H 1.09004 * 109.63266 * 170.32638 * 29 28 27 50 50 H 1.08996 * 109.30580 * 282.92112 * 30 23 22 51 51 H 1.08998 * 109.30403 * 42.31274 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5678 -0.8433 1.1730 6 1 3.9380 -1.3393 2.0702 7 7 4.1547 0.4956 1.0778 8 6 5.4380 0.7124 1.5039 9 1 6.0158 -0.1026 1.9140 10 6 5.9939 1.9812 1.4142 11 7 5.2876 2.9759 0.9202 12 14 7.7442 2.2773 1.9960 13 1 8.6847 2.0562 0.8683 14 1 7.8745 3.6741 2.4827 15 1 8.0648 1.3366 3.0995 16 6 3.9600 -1.6607 -0.0601 17 6 3.4686 -0.9435 -1.3210 18 7 2.0253 -0.6990 -1.1936 19 6 1.1721 -1.1085 -2.1531 20 8 0.0004 -0.7911 -2.1001 21 6 1.6629 -1.9459 -3.2727 22 6 0.9417 -2.0035 -4.4617 23 6 1.4132 -2.7923 -5.5045 24 6 2.5887 -3.4897 -5.3239 25 6 3.2558 -3.3868 -4.1074 26 7 2.7907 -2.6325 -3.1383 27 6 3.1864 -4.3581 -6.3980 28 6 2.1375 -4.6977 -7.4558 29 6 1.4752 -3.3954 -7.9201 30 6 0.6162 -2.8547 -6.7778 31 1 -0.3634 0.3907 0.9506 32 1 -0.3633 0.6278 -0.8136 33 1 -0.3633 -1.0185 -0.1369 34 1 1.6049 -1.7246 1.2921 35 1 1.7638 -0.1659 2.1375 36 1 3.6344 1.2285 0.7132 37 1 5.6762 3.8624 0.8573 38 1 5.0446 -1.7624 -0.0991 39 1 3.5034 -2.6487 -0.0019 40 1 3.6576 -1.5683 -2.1940 41 1 3.9917 0.0062 -1.4313 42 1 0.0265 -1.4410 -4.5730 43 1 4.1751 -3.9339 -3.9588 44 1 4.0151 -3.8294 -6.8690 45 1 3.5586 -5.2797 -5.9506 46 1 2.6173 -5.1870 -8.3034 47 1 1.3846 -5.3584 -7.0261 48 1 2.2428 -2.6658 -8.1784 49 1 0.8499 -3.5928 -8.7909 50 1 -0.2437 -3.5086 -6.6330 51 1 0.2657 -1.8546 -7.0329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044676022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:56 Heat of formation + Delta-G solvation = 6.927034 kcal Electronic energy + Delta-G solvation = -30969.162974 eV Core-core repulsion = 27061.072624 eV Total energy + Delta-G solvation = -3908.090350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.24035 -41.01735 -38.87694 -37.83089 -35.89766 -34.04221 -33.87449 -33.58966 -31.99548 -30.90770 -30.38794 -28.36291 -26.00381 -25.64072 -25.21008 -24.56630 -23.71848 -23.12729 -21.81752 -20.55180 -19.73294 -19.20831 -18.18931 -17.68788 -17.20767 -16.79654 -16.62741 -16.22586 -15.92265 -15.75410 -15.58225 -15.40561 -15.14728 -14.99204 -14.76998 -14.72925 -14.31315 -14.07793 -13.96601 -13.56893 -13.50612 -13.35307 -13.22652 -12.99874 -12.92643 -12.81387 -12.66229 -12.47101 -12.15924 -12.11522 -11.96646 -11.74456 -11.67713 -11.57817 -11.43020 -11.39231 -10.93770 -10.61945 -10.41215 -9.96077 -9.84673 -9.47390 -8.95022 -7.90201 -5.17678 -0.36302 0.17388 1.47998 1.49222 1.57500 1.63413 1.93498 2.58597 2.72692 3.09502 3.43238 3.50601 3.63397 3.77090 3.84899 3.86625 3.90914 4.03561 4.05080 4.05572 4.13378 4.35394 4.39330 4.42719 4.44927 4.50642 4.59721 4.63704 4.65959 4.73132 4.75195 4.82592 4.88501 4.93638 5.02072 5.04000 5.06353 5.12304 5.15759 5.21868 5.24913 5.28657 5.33071 5.37101 5.37733 5.44688 5.47574 5.57202 5.66939 5.82752 6.31440 6.43715 6.70866 7.10921 7.37761 8.13847 8.37934 9.33493 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.002917 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.981750 B = 9597.201154 C =10736.160459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.142 3.858 3 H 0.050 0.950 4 C -0.120 4.120 5 C 0.164 3.836 6 H 0.049 0.951 7 N -0.730 5.730 8 C -0.230 4.230 9 H 0.077 0.923 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.969 3.031 13 H -0.289 1.289 14 H -0.300 1.300 15 H -0.269 1.269 16 C -0.126 4.126 17 C 0.091 3.909 18 N -0.579 5.579 19 C 0.561 3.439 20 O -0.559 6.559 21 C 0.050 3.950 22 C -0.118 4.118 23 C -0.044 4.044 24 C -0.101 4.101 25 C 0.090 3.910 26 N -0.465 5.465 27 C -0.079 4.079 28 C -0.120 4.120 29 C -0.119 4.119 30 C -0.084 4.084 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.371 0.629 37 H 0.248 0.752 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.148 0.852 41 H 0.029 0.971 42 H 0.142 0.858 43 H 0.189 0.811 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 -19.014 -18.830 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.039 3.961 3 H 0.068 0.932 4 C -0.159 4.159 5 C 0.055 3.945 6 H 0.067 0.933 7 N -0.371 5.371 8 C -0.362 4.362 9 H 0.094 0.906 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.799 3.201 13 H -0.216 1.216 14 H -0.227 1.227 15 H -0.194 1.194 16 C -0.167 4.167 17 C -0.031 4.031 18 N -0.309 5.309 19 C 0.349 3.651 20 O -0.439 6.439 21 C -0.084 4.084 22 C -0.139 4.139 23 C -0.052 4.052 24 C -0.103 4.103 25 C -0.071 4.071 26 N -0.177 5.177 27 C -0.117 4.117 28 C -0.157 4.157 29 C -0.157 4.157 30 C -0.121 4.121 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.204 0.796 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.164 0.836 41 H 0.047 0.953 42 H 0.160 0.840 43 H 0.206 0.794 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.105 0.895 50 H 0.111 0.889 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.153 -18.783 -17.860 27.171 hybrid contribution 0.477 1.281 -0.005 1.367 sum -7.677 -17.502 -17.865 26.161 Atomic orbital electron populations 1.22008 0.92086 1.02671 1.00982 1.21216 0.95582 0.94811 0.84481 0.93232 1.22107 0.95848 1.01128 0.96781 1.20483 0.91707 0.86232 0.96036 0.93304 1.42654 1.13166 1.06209 1.75108 1.19619 0.90884 0.94078 1.31570 0.90559 1.25492 1.02061 0.95965 1.03451 1.69825 1.38036 1.00675 1.53795 0.85188 0.80468 0.76473 0.77938 1.21624 1.22707 1.19435 1.22191 1.00468 0.98390 0.95605 1.22636 0.77613 1.00313 1.02573 1.48053 1.08381 1.55165 1.19285 1.18349 0.85211 0.79706 0.81823 1.90766 1.17721 1.58749 1.76679 1.20984 0.93716 0.99065 0.94679 1.22141 1.00489 0.99054 0.92182 1.20200 0.94931 0.93805 0.96225 1.21122 0.94532 0.97549 0.97061 1.23529 1.00320 0.94738 0.88465 1.67300 1.10887 1.06820 1.32671 1.20578 0.98704 0.98735 0.93643 1.21592 0.98116 0.97347 0.98639 1.21593 0.99369 0.97512 0.97181 1.20576 0.97901 1.03281 0.90310 0.92132 0.92249 0.92315 0.90115 0.90763 0.79573 0.94328 0.92148 0.91242 0.83619 0.95260 0.84038 0.79437 0.88819 0.88356 0.89281 0.91575 0.91694 0.89471 0.88927 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 7.62 71.98 0.55 -3.55 16 2 C 0.14 5.34 3.19 44.97 0.14 5.48 16 3 H 0.05 2.17 6.64 -2.39 -0.02 2.15 16 4 C -0.12 -4.25 5.07 30.67 0.16 -4.09 16 5 C 0.16 6.62 3.10 45.02 0.14 6.76 16 6 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 7 N -0.73 -36.87 4.31 -322.80 -1.39 -38.26 16 8 C -0.23 -12.68 9.93 84.03 0.83 -11.85 16 9 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 10 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 11 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 12 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 C -0.13 -4.59 5.78 30.67 0.18 -4.41 16 17 C 0.09 3.40 5.87 86.35 0.51 3.91 16 18 N -0.58 -21.46 2.97 -798.10 -2.37 -23.83 16 19 C 0.56 20.10 7.38 86.89 0.64 20.74 16 20 O -0.56 -21.36 12.15 -3.75 -0.05 -21.40 16 21 C 0.05 1.50 6.43 41.88 0.27 1.77 16 22 C -0.12 -2.91 9.26 22.68 0.21 -2.70 16 23 C -0.04 -0.81 5.74 -19.88 -0.11 -0.92 16 24 C -0.10 -1.63 5.75 -19.80 -0.11 -1.74 16 25 C 0.09 1.76 10.79 84.98 0.92 2.68 16 26 N -0.47 -12.69 6.49 -184.70 -1.20 -13.89 16 27 C -0.08 -0.70 5.71 29.72 0.17 -0.53 16 28 C -0.12 -0.83 5.97 30.63 0.18 -0.65 16 29 C -0.12 -0.97 5.98 30.63 0.18 -0.79 16 30 C -0.08 -1.01 5.72 29.68 0.17 -0.84 16 31 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.06 2.17 6.68 -2.39 -0.02 2.16 16 33 H 0.06 2.02 6.83 -2.39 -0.02 2.00 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.37 20.47 6.06 -92.71 -0.56 19.90 16 37 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.15 4.98 3.87 -55.30 -0.21 4.77 16 41 H 0.03 1.32 7.74 -2.39 -0.02 1.30 16 42 H 0.14 3.45 7.79 -2.91 -0.02 3.43 16 43 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.10 0.59 8.13 -2.39 -0.02 0.57 16 46 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.07 0.50 8.10 -2.39 -0.02 0.48 16 48 H 0.06 0.59 8.10 -2.38 -0.02 0.57 16 49 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -70.17 388.26 2.96 -67.22 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: 0.17 Total: 36.38 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.49 Total: 5.24 kcal Atomic # 7 Polarization: -131.41 SS G_CDS: -4.68 Total: -136.09 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.40 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -70.17 2.96 -67.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044676022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.143 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds