Wall clock time and date at job start Wed Apr 1 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.58698 * 2 1 4 4 C 1.53189 * 109.59073 * 239.57547 * 2 1 3 5 5 C 1.53041 * 109.31750 * 185.57966 * 4 2 1 6 6 H 1.09003 * 109.45420 * 301.34261 * 5 4 2 7 7 N 1.46496 * 109.46009 * 181.38713 * 5 4 2 8 8 C 1.36943 * 120.00050 * 154.93110 * 7 5 4 9 9 H 1.08002 * 119.99703 * 0.02562 * 8 7 5 10 10 C 1.38814 * 120.00295 * 179.97438 * 8 7 5 11 11 N 1.31608 * 119.99846 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99496 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47213 * 90.00208 * 12 10 8 14 14 H 1.48507 * 109.46903 * 209.99462 * 12 10 8 15 15 H 1.48495 * 109.47586 * 329.99391 * 12 10 8 16 16 C 1.53037 * 109.53574 * 61.36088 * 5 4 2 17 17 C 1.53188 * 109.31622 * 298.63761 * 16 5 4 18 18 N 1.46923 * 109.58694 * 120.28563 * 2 1 3 19 19 C 1.34781 * 120.63092 * 353.37535 * 18 2 1 20 20 O 1.21598 * 119.99893 * 6.20521 * 19 18 2 21 21 C 1.47515 * 120.00024 * 186.20702 * 19 18 2 22 22 C 1.39816 * 120.21386 * 28.77890 * 21 19 18 23 23 C 1.37390 * 120.12168 * 179.90027 * 22 21 19 24 24 C 1.39759 * 120.39148 * 0.54685 * 23 22 21 25 25 C 1.39307 * 119.30081 * 359.48166 * 24 23 22 26 26 C 1.37424 * 120.64759 * 0.31806 * 25 24 23 27 27 C 1.51620 * 107.87947 * 180.52998 * 25 24 23 28 28 C 1.54602 * 102.72820 * 16.01095 * 27 25 24 29 29 N 1.39468 * 129.73693 * 179.24615 * 24 23 22 30 30 C 1.46894 * 110.99925 * 283.72506 * 29 24 23 31 31 H 1.08996 * 109.47593 * 303.33521 * 1 2 3 32 32 H 1.09007 * 109.46991 * 63.33398 * 1 2 3 33 33 H 1.09004 * 109.47133 * 183.32982 * 1 2 3 34 34 H 1.09002 * 109.49869 * 305.53107 * 4 2 1 35 35 H 1.08998 * 109.49851 * 65.62434 * 4 2 1 36 36 H 0.96998 * 120.00067 * 334.92377 * 7 5 4 37 37 H 0.97005 * 119.99848 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.49396 * 178.68343 * 16 5 4 39 39 H 1.09004 * 109.52513 * 58.60740 * 16 5 4 40 40 H 1.08999 * 109.58726 * 294.84932 * 17 16 5 41 41 H 1.09001 * 109.70661 * 174.49353 * 17 16 5 42 42 H 1.08000 * 119.93751 * 0.15340 * 22 21 19 43 43 H 1.08001 * 119.80506 * 180.31840 * 23 22 21 44 44 H 1.07997 * 120.01923 * 179.86601 * 26 25 24 45 45 H 1.08999 * 110.75979 * 134.32213 * 27 25 24 46 46 H 1.08998 * 110.75693 * 257.70300 * 27 25 24 47 47 H 1.08993 * 110.77937 * 92.72193 * 28 27 25 48 48 H 1.09007 * 110.77588 * 215.95669 * 28 27 25 49 49 H 1.09005 * 109.47213 * 299.85568 * 30 29 24 50 50 H 1.09000 * 109.47136 * 59.85911 * 30 29 24 51 51 H 1.09005 * 109.47211 * 179.85598 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7308 -1.2445 5 6 3.5676 -0.8494 -1.1690 6 1 4.0061 0.1461 -1.0994 7 7 4.0652 -1.5186 -2.3735 8 6 5.3494 -1.3010 -2.7966 9 1 5.9953 -0.6363 -2.2421 10 6 5.8212 -1.9354 -3.9376 11 7 7.0551 -1.7259 -4.3444 12 14 4.7041 -3.0855 -4.8961 13 1 3.9692 -2.3137 -5.9303 14 1 5.5220 -4.1375 -5.5518 15 1 3.7332 -3.7197 -3.9686 16 6 3.9569 -1.6656 0.0656 17 6 3.4650 -0.9453 1.3249 18 7 2.0225 -0.6981 1.1953 19 6 1.1674 -1.1036 2.1549 20 8 -0.0319 -0.9948 1.9861 21 6 1.6864 -1.6793 3.4100 22 6 2.9395 -1.2939 3.8956 23 6 3.4202 -1.8298 5.0658 24 6 2.6679 -2.7712 5.7738 25 6 1.4200 -3.1529 5.2862 26 6 0.9307 -2.6182 4.1186 27 6 0.8321 -4.1632 6.2518 28 6 1.7049 -3.9758 7.5141 29 7 2.9676 -3.4434 6.9585 30 6 3.9349 -4.5231 6.7208 31 1 -0.3634 0.5647 0.8585 32 1 -0.3633 0.4612 -0.9184 33 1 -0.3633 -1.0260 0.0597 34 1 1.6031 -1.7269 -1.2892 35 1 1.7661 -0.1694 -2.1366 36 1 3.4852 -2.1158 -2.8712 37 1 7.3849 -2.1695 -5.1415 38 1 5.0412 -1.7694 0.1059 39 1 3.4987 -2.6530 0.0089 40 1 3.9903 0.0038 1.4317 41 1 3.6520 -1.5669 2.2006 42 1 3.5290 -0.5705 3.3520 43 1 4.3866 -1.5246 5.4390 44 1 -0.0371 -2.9230 3.7487 45 1 -0.2113 -3.9315 6.4656 46 1 0.9318 -5.1754 5.8600 47 1 1.2494 -3.2578 8.1960 48 1 1.8711 -4.9300 8.0143 49 1 3.5151 -5.2376 6.0126 50 1 4.8543 -4.1039 6.3122 51 1 4.1529 -5.0292 7.6613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044815837.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:10 Heat of formation + Delta-G solvation = 55.876819 kcal Electronic energy + Delta-G solvation = -30577.358700 eV Core-core repulsion = 26671.390972 eV Total energy + Delta-G solvation = -3905.967728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35347 -40.36167 -37.61953 -36.89195 -34.71051 -33.09644 -32.56734 -31.96999 -30.33500 -29.74679 -29.23154 -27.25301 -26.33662 -24.56061 -24.00355 -23.04449 -22.06068 -21.53471 -21.19783 -20.15321 -19.24412 -17.61313 -17.09761 -16.91115 -16.41960 -15.91560 -15.47911 -15.24529 -14.91749 -14.79063 -14.37381 -14.20554 -13.95102 -13.80075 -13.57841 -13.46861 -13.28041 -13.08425 -12.89654 -12.71612 -12.55167 -12.39553 -12.29971 -12.11123 -11.94383 -11.84061 -11.62686 -11.47642 -11.11942 -11.01526 -10.89869 -10.82480 -10.51254 -10.28759 -9.93249 -9.76428 -9.62320 -9.11630 -9.05269 -8.92286 -8.49418 -8.22067 -7.30782 -5.80579 -3.16227 0.63587 1.09712 2.68497 2.95624 3.26142 3.35576 3.39079 3.43511 3.56159 4.17294 4.33648 4.47534 4.56225 4.56412 4.67556 4.80143 4.88558 4.98405 5.00851 5.05484 5.08313 5.17710 5.20168 5.23524 5.28503 5.40614 5.41674 5.47461 5.48633 5.53182 5.56730 5.70984 5.73719 5.82162 5.88536 5.94538 6.01024 6.03561 6.05890 6.10097 6.26473 6.30873 6.34886 6.37039 6.45895 6.48439 6.67863 6.80675 6.86116 6.93997 7.48540 7.95050 8.22133 8.38600 9.16880 9.89834 10.09712 11.37655 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.002754 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.512294 B =10164.342492 C =11312.234916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.139 4.139 5 C 0.183 3.817 6 H 0.057 0.943 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.091 0.909 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.151 4.151 17 C 0.085 3.915 18 N -0.596 5.596 19 C 0.561 3.439 20 O -0.537 6.537 21 C -0.141 4.141 22 C -0.079 4.079 23 C -0.120 4.120 24 C 0.110 3.890 25 C -0.152 4.152 26 C -0.031 4.031 27 C -0.109 4.109 28 C 0.049 3.951 29 N -0.498 5.498 30 C 0.026 3.974 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.361 0.639 37 H 0.259 0.741 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.149 0.851 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.036 0.964 50 H 0.075 0.925 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 -2.693 24.205 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.045 3.955 3 H 0.092 0.908 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.075 0.925 7 N -0.390 5.390 8 C -0.373 4.373 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.192 4.192 17 C -0.038 4.038 18 N -0.329 5.329 19 C 0.350 3.650 20 O -0.416 6.416 21 C -0.145 4.145 22 C -0.097 4.097 23 C -0.139 4.139 24 C 0.014 3.986 25 C -0.154 4.154 26 C -0.050 4.050 27 C -0.147 4.147 28 C -0.078 4.078 29 N -0.215 5.215 30 C -0.120 4.120 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.166 0.834 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.055 0.945 50 H 0.094 0.906 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.299 -2.242 24.451 27.029 hybrid contribution -0.791 -1.468 -1.344 2.142 sum -12.091 -3.710 23.107 26.342 Atomic orbital electron populations 1.22210 0.92761 1.03679 1.00516 1.21315 0.95501 0.95070 0.83581 0.90809 1.22343 0.97509 1.00986 0.96965 1.20148 0.90787 0.95344 0.86356 0.92518 1.42801 1.13223 1.54715 1.28250 1.19062 0.87703 1.23221 1.07355 0.89166 1.24666 0.96096 1.00085 0.98229 1.69695 1.15118 1.47107 1.26190 0.86566 0.80351 0.81303 0.80387 1.21067 1.21781 1.20376 1.22649 1.02116 0.99798 0.94642 1.22596 0.79526 1.00951 1.00692 1.48074 1.07683 1.57129 1.19994 1.18157 0.86000 0.77881 0.82951 1.90828 1.15185 1.55887 1.79729 1.19884 0.95947 1.01576 0.97103 1.21581 0.94154 0.99197 0.94801 1.20438 1.00977 0.97396 0.95125 1.19726 0.94276 0.95108 0.89516 1.20881 0.97864 1.00205 0.96497 1.20353 0.98866 0.93596 0.92183 1.21679 1.00929 0.98020 0.94056 1.23195 0.87634 1.00593 0.96369 1.59928 1.12707 1.25297 1.23584 1.22505 0.95589 0.92233 1.01634 0.91305 0.93880 0.91126 0.91883 0.90503 0.80656 0.93047 0.90113 0.92315 0.91021 0.88342 0.83402 0.85089 0.85155 0.89310 0.89979 0.89117 0.89503 0.94544 0.90600 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.59 37.16 0.28 -1.59 16 2 C 0.15 2.06 3.49 -67.60 -0.24 1.82 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.14 -2.18 4.84 -26.61 -0.13 -2.31 16 5 C 0.18 3.33 2.73 -67.89 -0.19 3.14 16 6 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 7 N -0.75 -17.15 4.92 -53.39 -0.26 -17.41 16 8 C -0.24 -6.65 10.41 -15.06 -0.16 -6.81 16 9 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.88 13.97 55.49 0.78 -28.11 16 12 Si 0.88 21.97 27.74 -169.99 -4.71 17.25 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 16 C -0.15 -2.43 5.66 -26.62 -0.15 -2.58 16 17 C 0.08 1.06 4.70 -3.71 -0.02 1.04 16 18 N -0.60 -8.11 2.97 -166.45 -0.49 -8.60 16 19 C 0.56 8.02 7.37 -12.48 -0.09 7.92 16 20 O -0.54 -8.81 12.09 5.28 0.06 -8.75 16 21 C -0.14 -1.75 5.48 -104.94 -0.58 -2.32 16 22 C -0.08 -0.82 7.38 -39.30 -0.29 -1.11 16 23 C -0.12 -1.17 10.05 -39.32 -0.40 -1.57 16 24 C 0.11 1.12 5.57 -83.42 -0.46 0.65 16 25 C -0.15 -1.56 6.21 -104.07 -0.65 -2.21 16 26 C -0.03 -0.36 9.58 -39.29 -0.38 -0.73 16 27 C -0.11 -0.80 6.98 -26.59 -0.19 -0.99 16 28 C 0.05 0.32 6.99 -2.44 -0.02 0.31 16 29 N -0.50 -4.29 5.31 -176.83 -0.94 -5.23 16 30 C 0.03 0.18 9.28 60.06 0.56 0.74 16 31 H 0.07 1.00 6.75 -51.93 -0.35 0.65 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.09 6.75 -51.93 -0.35 0.74 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.36 8.30 5.66 -40.82 -0.23 8.06 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 41 H 0.10 1.09 4.08 -51.93 -0.21 0.88 16 42 H 0.15 1.34 5.34 -52.49 -0.28 1.06 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.13 1.52 7.91 -52.49 -0.42 1.10 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.09 0.40 7.77 -51.93 -0.40 0.00 16 49 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -32.64 389.99 -11.03 -43.67 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -8.16 Total: 7.83 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.17 Total: -6.53 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.92 Total: -59.35 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.06 Total: -8.75 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.64 -11.03 -43.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044815837.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.546 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds