Wall clock time and date at job start Wed Apr 1 2020 03:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.70148 * 2 1 4 4 C 1.53188 * 109.58638 * 120.35268 * 2 1 3 5 5 C 1.53039 * 109.31130 * 174.42624 * 4 2 1 6 6 H 1.09003 * 109.45191 * 178.62585 * 5 4 2 7 7 N 1.46498 * 109.46165 * 58.65567 * 5 4 2 8 8 C 1.36942 * 120.00154 * 154.93415 * 7 5 4 9 9 H 1.08000 * 119.99484 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00265 * 179.97438 * 8 7 5 11 11 N 1.31616 * 119.99666 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00155 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46912 * 89.99946 * 12 10 8 14 14 H 1.48499 * 109.47043 * 209.99998 * 12 10 8 15 15 H 1.48503 * 109.46986 * 330.00064 * 12 10 8 16 16 C 1.53045 * 109.53922 * 298.63448 * 5 4 2 17 17 C 1.53194 * 109.30985 * 61.36505 * 16 5 4 18 18 N 1.46926 * 108.89524 * 305.29584 * 17 16 5 19 19 C 1.34774 * 120.63301 * 233.67932 * 18 17 16 20 20 O 1.21598 * 120.00311 * 186.24713 * 19 18 17 21 21 C 1.47524 * 119.99810 * 6.24332 * 19 18 17 22 22 C 1.39804 * 120.21303 * 33.42304 * 21 19 18 23 23 C 1.37391 * 120.12655 * 179.90313 * 22 21 19 24 24 C 1.39771 * 120.38871 * 0.54566 * 23 22 21 25 25 C 1.39305 * 119.29570 * 359.48249 * 24 23 22 26 26 C 1.37431 * 120.65178 * 0.32398 * 25 24 23 27 27 C 1.51612 * 107.87991 * 180.52566 * 25 24 23 28 28 C 1.54614 * 102.72504 * 16.01594 * 27 25 24 29 29 N 1.39459 * 129.74050 * 179.24504 * 24 23 22 30 30 C 1.46894 * 111.00250 * 283.73181 * 29 24 23 31 31 H 1.09005 * 109.47013 * 292.50230 * 1 2 3 32 32 H 1.09003 * 109.47211 * 52.50365 * 1 2 3 33 33 H 1.09000 * 109.46788 * 172.50229 * 1 2 3 34 34 H 1.09000 * 109.49930 * 54.47640 * 4 2 1 35 35 H 1.09001 * 109.52748 * 294.39188 * 4 2 1 36 36 H 0.96992 * 120.00340 * 334.92984 * 7 5 4 37 37 H 0.96998 * 120.00226 * 179.97438 * 11 10 8 38 38 H 1.09003 * 109.49781 * 301.41932 * 16 5 4 39 39 H 1.08996 * 109.52783 * 181.33242 * 16 5 4 40 40 H 1.08992 * 109.58437 * 65.15463 * 17 16 5 41 41 H 1.09005 * 109.58374 * 185.43812 * 17 16 5 42 42 H 1.08002 * 119.94170 * 0.15239 * 22 21 19 43 43 H 1.07999 * 119.81114 * 180.27090 * 23 22 21 44 44 H 1.07997 * 120.01975 * 179.87016 * 26 25 24 45 45 H 1.08998 * 110.76007 * 134.31946 * 27 25 24 46 46 H 1.08996 * 110.76128 * 257.70512 * 27 25 24 47 47 H 1.08994 * 110.77553 * 92.71755 * 28 27 25 48 48 H 1.08999 * 110.77024 * 216.14521 * 28 27 25 49 49 H 1.09008 * 109.46799 * 299.85278 * 30 29 24 50 50 H 1.08993 * 109.47665 * 59.85140 * 30 29 24 51 51 H 1.09001 * 109.47177 * 179.85673 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5675 -0.8478 1.1702 6 1 3.9377 -1.3448 2.0669 7 7 4.1570 0.4900 1.0750 8 6 5.4409 0.7043 1.5003 9 1 6.0187 -0.1128 1.9063 10 6 5.9997 1.9718 1.4096 11 7 5.2953 2.9676 0.9153 12 14 7.7508 2.2643 1.9904 13 1 8.6903 2.0405 0.8624 14 1 7.8844 3.6613 2.4761 15 1 8.0698 1.3237 3.0944 16 6 3.9570 -1.6656 -0.0634 17 6 3.4651 -0.9468 -1.3237 18 7 2.0223 -0.6997 -1.1979 19 6 1.1693 -1.1080 -2.1582 20 8 -0.0054 -0.7994 -2.0994 21 6 1.6609 -1.9295 -3.2807 22 6 2.6985 -2.8449 -3.0810 23 6 3.1535 -3.6104 -4.1272 24 6 2.5926 -3.4733 -5.4001 25 6 1.5593 -2.5596 -5.5948 26 6 1.0960 -1.7931 -4.5523 27 6 1.1417 -2.6323 -7.0504 28 6 1.7707 -3.9648 -7.5190 29 7 2.9084 -4.1302 -6.5890 30 6 4.1469 -3.5972 -7.1721 31 1 -0.3633 0.3933 0.9495 32 1 -0.3634 0.6256 -0.8154 33 1 -0.3633 -1.0189 -0.1341 34 1 1.6031 -1.7253 1.2913 35 1 1.7660 -0.1673 2.1371 36 1 3.6380 1.2239 0.7107 37 1 5.6855 3.8534 0.8522 38 1 3.4984 -2.6527 -0.0052 39 1 5.0412 -1.7699 -0.1039 40 1 3.9903 0.0021 -1.4316 41 1 3.6542 -1.5706 -2.1974 42 1 3.1405 -2.9535 -2.1016 43 1 3.9524 -4.3192 -3.9662 44 1 0.2959 -1.0864 -4.7152 45 1 0.0559 -2.6652 -7.1397 46 1 1.5514 -1.7930 -7.6123 47 1 1.0616 -4.7856 -7.4123 48 1 2.1209 -3.8861 -8.5482 49 1 4.0208 -2.5355 -7.3847 50 1 4.9675 -3.7316 -6.4675 51 1 4.3712 -4.1287 -8.0969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044815839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:14 Heat of formation + Delta-G solvation = 52.589464 kcal Electronic energy + Delta-G solvation = -31042.044580 eV Core-core repulsion = 27135.934302 eV Total energy + Delta-G solvation = -3906.110278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.22474 -40.18607 -37.54557 -36.76093 -34.21747 -32.92926 -32.40813 -31.91067 -30.14175 -29.15231 -29.05443 -27.09388 -26.23055 -24.36574 -23.82170 -23.45776 -22.07419 -21.65187 -21.15837 -19.90329 -18.32906 -17.24194 -16.93875 -16.81852 -16.24000 -15.93160 -15.65435 -15.03010 -14.65495 -14.35590 -14.14111 -14.00956 -13.92099 -13.73839 -13.53095 -13.40593 -13.19898 -13.11325 -12.85621 -12.61268 -12.37766 -12.22494 -12.02380 -11.90957 -11.90483 -11.50650 -11.40359 -11.17937 -11.03459 -10.89017 -10.79747 -10.59023 -10.34731 -10.24120 -9.95551 -9.65277 -9.65260 -9.01122 -8.93756 -8.83359 -8.22254 -8.03362 -7.00298 -5.80270 -3.09333 0.78317 1.21922 2.85573 3.19195 3.38087 3.40302 3.46103 3.47664 3.69580 4.27860 4.45685 4.55925 4.61176 4.67910 4.79589 4.90577 5.05938 5.11123 5.18963 5.22531 5.29027 5.31195 5.35482 5.40767 5.48225 5.51701 5.56359 5.60407 5.62054 5.71988 5.76248 5.84874 5.90291 5.98907 6.03740 6.12778 6.15984 6.19740 6.25855 6.32218 6.40695 6.43821 6.51621 6.58102 6.63067 6.72206 6.78786 6.84563 6.96712 7.08018 7.66834 7.77508 8.38105 8.44436 9.49525 10.06387 10.41173 11.42134 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.003049 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.167921 B = 9181.752004 C =10502.050826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.146 3.854 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.174 3.826 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.087 3.913 18 N -0.590 5.590 19 C 0.558 3.442 20 O -0.542 6.542 21 C -0.136 4.136 22 C -0.077 4.077 23 C -0.119 4.119 24 C 0.107 3.893 25 C -0.152 4.152 26 C -0.033 4.033 27 C -0.108 4.108 28 C 0.049 3.951 29 N -0.498 5.498 30 C 0.026 3.974 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.149 0.851 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.036 0.964 50 H 0.075 0.925 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 -14.167 -15.160 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.099 0.901 4 C -0.172 4.172 5 C 0.064 3.936 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.192 4.192 17 C -0.035 4.035 18 N -0.322 5.322 19 C 0.347 3.653 20 O -0.421 6.421 21 C -0.140 4.140 22 C -0.095 4.095 23 C -0.139 4.139 24 C 0.010 3.990 25 C -0.154 4.154 26 C -0.052 4.052 27 C -0.146 4.146 28 C -0.078 4.078 29 N -0.215 5.215 30 C -0.119 4.119 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.167 0.833 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.054 0.946 50 H 0.093 0.907 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.207 -14.535 -14.982 22.084 hybrid contribution 0.950 1.250 0.057 1.571 sum -6.258 -13.285 -14.926 20.939 Atomic orbital electron populations 1.22174 0.93266 1.03187 1.00607 1.21315 0.94783 0.96105 0.83390 0.90135 1.22245 0.97382 1.00267 0.97323 1.20179 0.90448 0.88114 0.94869 0.93076 1.42513 1.13825 1.04715 1.75352 1.19227 0.89805 0.94152 1.33846 0.91200 1.24725 0.98244 0.95919 1.01928 1.69652 1.36452 1.00619 1.51282 0.86226 0.84810 0.77103 0.78246 1.21797 1.21863 1.20813 1.22538 1.01463 0.97891 0.97286 1.22395 0.79257 1.02698 0.99147 1.48109 1.07688 1.56492 1.19876 1.18126 0.85667 0.79652 0.81852 1.90802 1.17029 1.57584 1.76715 1.19925 0.99100 1.00460 0.94517 1.21488 0.94150 0.94009 0.99881 1.20423 1.02282 1.01125 0.90058 1.19691 0.95696 0.91966 0.91624 1.20858 1.00918 0.97959 0.95709 1.20345 0.97626 0.97220 0.90049 1.21671 1.02342 0.98814 0.91812 1.23195 0.91960 0.96743 0.95861 1.59927 1.04835 1.54169 1.02594 1.22498 0.90896 0.98217 1.00336 0.93861 0.90910 0.92012 0.92075 0.90650 0.78122 0.93504 0.93259 0.90670 0.89827 0.88948 0.83342 0.85212 0.85229 0.89363 0.90032 0.89145 0.89589 0.94575 0.90657 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 7.62 37.16 0.28 -1.91 16 2 C 0.15 2.51 3.20 -67.45 -0.22 2.29 16 3 H 0.08 1.57 6.64 -51.93 -0.34 1.22 16 4 C -0.13 -2.20 5.07 -26.61 -0.13 -2.33 16 5 C 0.17 3.23 3.10 -67.89 -0.21 3.02 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.72 -16.83 4.31 -53.38 -0.23 -17.06 16 8 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 12 Si 0.90 21.78 29.55 -169.99 -5.02 16.76 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.15 -2.41 5.44 -26.61 -0.14 -2.56 16 17 C 0.09 1.39 5.26 -3.71 -0.02 1.37 16 18 N -0.59 -9.72 2.98 -166.23 -0.50 -10.21 16 19 C 0.56 9.24 7.19 -12.48 -0.09 9.15 16 20 O -0.54 -10.01 12.42 5.28 0.07 -9.95 16 21 C -0.14 -1.94 5.45 -104.94 -0.57 -2.51 16 22 C -0.08 -0.95 7.37 -39.30 -0.29 -1.24 16 23 C -0.12 -1.34 10.05 -39.32 -0.40 -1.74 16 24 C 0.11 1.21 5.57 -83.42 -0.46 0.74 16 25 C -0.15 -1.74 6.21 -104.07 -0.65 -2.39 16 26 C -0.03 -0.43 9.59 -39.29 -0.38 -0.81 16 27 C -0.11 -0.90 6.98 -26.59 -0.19 -1.09 16 28 C 0.05 0.37 7.00 -2.44 -0.02 0.35 16 29 N -0.50 -4.76 5.31 -176.83 -0.94 -5.69 16 30 C 0.03 0.20 9.28 60.06 0.56 0.76 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.27 6.69 -51.93 -0.35 0.92 16 33 H 0.06 1.03 6.83 -51.93 -0.35 0.68 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.38 9.64 6.06 -40.82 -0.25 9.40 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.05 0.68 7.61 -51.93 -0.40 0.29 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.61 7.74 -51.93 -0.40 1.21 16 41 H 0.09 1.29 3.52 -51.93 -0.18 1.10 16 42 H 0.15 1.75 4.99 -52.49 -0.26 1.49 16 43 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.13 1.68 7.98 -52.49 -0.42 1.26 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.46 7.76 -51.93 -0.40 0.06 16 49 H 0.04 0.29 8.14 -51.92 -0.42 -0.14 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -30.62 388.25 -11.19 -41.80 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.97 Total: 10.80 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -3.17 Total: -5.73 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.94 Total: -59.53 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.62 -11.19 -41.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044815839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.394 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds