Wall clock time and date at job start Wed Apr 1 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.58938 * 2 1 4 4 C 1.53188 * 109.58879 * 239.71442 * 2 1 3 5 5 C 1.53037 * 109.31476 * 185.58268 * 4 2 1 6 6 H 1.09003 * 109.45791 * 301.35488 * 5 4 2 7 7 N 1.46505 * 109.46257 * 181.38342 * 5 4 2 8 8 C 1.36932 * 120.00173 * 154.99290 * 7 5 4 9 9 H 1.08009 * 120.00217 * 359.73111 * 8 7 5 10 10 C 1.38810 * 120.00269 * 179.72660 * 8 7 5 11 11 N 1.31626 * 119.99905 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00152 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47036 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46865 * 119.99934 * 12 10 8 15 15 H 1.48498 * 109.47089 * 239.99862 * 12 10 8 16 16 C 1.53040 * 109.54084 * 61.36172 * 5 4 2 17 17 C 1.53191 * 109.31074 * 298.63618 * 16 5 4 18 18 N 1.46923 * 108.77709 * 54.63665 * 17 16 5 19 19 C 1.34773 * 120.63419 * 126.36332 * 18 17 16 20 20 O 1.21549 * 120.00357 * 186.23157 * 19 18 17 21 21 C 1.47865 * 119.99923 * 6.23604 * 19 18 17 22 22 C 1.39619 * 120.02581 * 28.76570 * 21 19 18 23 23 C 1.37996 * 119.74142 * 179.90611 * 22 21 19 24 24 C 1.38084 * 120.28117 * 0.51862 * 23 22 21 25 25 C 1.39082 * 120.71233 * 359.45789 * 24 23 22 26 26 C 1.39159 * 119.23935 * 0.41474 * 25 24 23 27 27 N 1.40105 * 110.92914 * 180.75304 * 25 24 23 28 28 C 1.46906 * 110.99774 * 219.53406 * 27 25 24 29 29 C 1.47898 * 107.85028 * 341.32975 * 27 25 24 30 30 C 1.51628 * 131.37171 * 179.08782 * 24 23 22 31 31 H 1.09004 * 109.47438 * 183.16039 * 1 2 3 32 32 H 1.09005 * 109.47709 * 303.16144 * 1 2 3 33 33 H 1.09009 * 109.47013 * 63.15973 * 1 2 3 34 34 H 1.09001 * 109.49930 * 65.62625 * 4 2 1 35 35 H 1.09008 * 109.49745 * 305.52977 * 4 2 1 36 36 H 0.97004 * 119.99875 * 334.72617 * 7 5 4 37 37 H 0.96991 * 120.00009 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.49869 * 58.58916 * 16 5 4 39 39 H 1.09004 * 109.49758 * 178.68484 * 16 5 4 40 40 H 1.08992 * 109.58767 * 294.84468 * 17 16 5 41 41 H 1.09000 * 109.69943 * 174.49383 * 17 16 5 42 42 H 1.08003 * 120.12661 * 0.14207 * 22 21 19 43 43 H 1.08001 * 119.85719 * 180.25237 * 23 22 21 44 44 H 1.08002 * 119.96111 * 179.70874 * 26 25 24 45 45 H 1.09000 * 109.47232 * 60.00004 * 28 27 25 46 46 H 1.08998 * 109.46881 * 179.97438 * 28 27 25 47 47 H 1.08995 * 109.47213 * 299.99849 * 28 27 25 48 48 H 1.09008 * 110.77528 * 269.16651 * 29 27 25 49 49 H 1.09003 * 110.78004 * 145.74126 * 29 27 25 50 50 H 1.08999 * 110.73837 * 314.47719 * 30 24 23 51 51 H 1.09000 * 110.73604 * 77.79410 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5674 -0.8466 -1.1711 6 1 4.0061 0.1486 -1.0988 7 7 4.0652 -1.5130 -2.3771 8 6 5.3496 -1.2954 -2.7989 9 1 5.9945 -0.6292 -2.2449 10 6 5.8231 -1.9312 -3.9384 11 7 5.0372 -2.7428 -4.6138 12 14 7.5756 -1.6349 -4.5134 13 1 8.2467 -0.6873 -3.5878 14 1 8.3161 -2.9221 -4.5276 15 1 7.5568 -1.0595 -5.8822 16 6 3.9568 -1.6658 0.0616 17 6 3.4649 -0.9485 1.3226 18 7 2.0224 -0.7010 1.1937 19 6 1.1672 -1.1096 2.1518 20 8 -0.0316 -1.0011 1.9829 21 6 1.6872 -1.6897 3.4086 22 6 2.9388 -1.3026 3.8913 23 6 3.4176 -1.8463 5.0659 24 6 2.6691 -2.7778 5.7579 25 6 1.4203 -3.1740 5.2912 26 6 0.9316 -2.6270 4.1086 27 7 0.8364 -4.1091 6.1558 28 6 0.1425 -5.1618 5.4018 29 6 1.9100 -4.6802 6.9977 30 6 2.9509 -3.5381 7.0391 31 1 -0.3634 -1.0261 0.0567 32 1 -0.3635 0.5621 0.8603 33 1 -0.3633 0.4640 -0.9170 34 1 1.7660 -0.1642 -2.1370 35 1 1.6029 -1.7238 -1.2934 36 1 3.4861 -2.1113 -2.8747 37 1 5.3681 -3.1873 -5.4098 38 1 3.4982 -2.6529 0.0022 39 1 5.0411 -1.7698 0.1017 40 1 3.9902 0.0002 1.4318 41 1 3.6519 -1.5723 2.1967 42 1 3.5283 -0.5777 3.3496 43 1 4.3837 -1.5452 5.4431 44 1 -0.0347 -2.9299 3.7330 45 1 0.8551 -5.6779 4.7585 46 1 -0.3011 -5.8744 6.0972 47 1 -0.6411 -4.7143 4.7904 48 1 2.3324 -5.5716 6.5337 49 1 1.5397 -4.9024 7.9985 50 1 3.9644 -3.9393 7.0349 51 1 2.7905 -2.9012 7.9090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044836924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:27 Heat of formation + Delta-G solvation = 49.053261 kcal Electronic energy + Delta-G solvation = -30560.707258 eV Core-core repulsion = 26654.443639 eV Total energy + Delta-G solvation = -3906.263619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24737 -40.24185 -37.47767 -36.85093 -34.53781 -33.34529 -32.53296 -31.93240 -30.19979 -29.61017 -28.97334 -27.03924 -26.05806 -24.53369 -23.91073 -23.25561 -22.03417 -21.47436 -21.28942 -20.06145 -19.15761 -17.23496 -17.04894 -16.58243 -16.27230 -16.00539 -15.38879 -15.23126 -15.16301 -14.81037 -14.34394 -13.98306 -13.94073 -13.69289 -13.56159 -13.40051 -13.15677 -13.04600 -12.98407 -12.66040 -12.44032 -12.20545 -12.10228 -12.03132 -11.79619 -11.70826 -11.51214 -11.38199 -11.08538 -10.93387 -10.80437 -10.76163 -10.45268 -10.22249 -10.10985 -9.82815 -9.71811 -9.08727 -8.96209 -8.92056 -8.39020 -8.00306 -6.98779 -5.79224 -3.08383 0.73526 1.13686 2.76331 2.95270 3.39266 3.40766 3.46112 3.48609 3.66867 4.16474 4.24041 4.47773 4.55762 4.66342 4.69141 4.85898 4.93957 5.05988 5.11314 5.13130 5.17475 5.19519 5.23698 5.29921 5.37831 5.46471 5.48788 5.50008 5.52173 5.55264 5.61891 5.65054 5.82728 5.91832 5.94189 6.02980 6.13613 6.15130 6.15630 6.26309 6.27370 6.40776 6.46570 6.50636 6.56245 6.59546 6.77286 6.86338 6.91550 7.05074 7.54379 7.66936 8.26767 8.38975 9.50219 10.08009 10.42700 11.43414 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.002657 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.340478 B =10535.157445 C =11562.298133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.147 3.853 3 H 0.072 0.928 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.151 4.151 17 C 0.084 3.916 18 N -0.594 5.594 19 C 0.558 3.442 20 O -0.534 6.534 21 C -0.102 4.102 22 C -0.119 4.119 23 C -0.089 4.089 24 C -0.122 4.122 25 C 0.084 3.916 26 C -0.080 4.080 27 N -0.479 5.479 28 C 0.014 3.986 29 C 0.044 3.956 30 C -0.086 4.086 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.146 0.854 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 -0.739 24.244 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.045 3.955 3 H 0.090 0.910 4 C -0.174 4.174 5 C 0.068 3.932 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.369 4.369 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.192 4.192 17 C -0.039 4.039 18 N -0.326 5.326 19 C 0.347 3.653 20 O -0.413 6.413 21 C -0.106 4.106 22 C -0.138 4.138 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.014 4.014 26 C -0.102 4.102 27 N -0.193 5.193 28 C -0.133 4.133 29 C -0.082 4.082 30 C -0.123 4.123 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.164 0.836 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.114 0.886 50 H 0.103 0.897 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.233 -0.454 24.435 25.487 hybrid contribution 1.414 -0.540 -1.012 1.821 sum -5.818 -0.994 23.423 24.155 Atomic orbital electron populations 1.22210 0.92813 1.03690 1.00467 1.21341 0.95475 0.94966 0.83764 0.91006 1.22299 0.97553 1.01006 0.96525 1.20177 0.90927 0.94959 0.87103 0.93452 1.42445 1.12992 1.54289 1.26693 1.19271 0.89107 1.21934 1.06625 0.91128 1.24755 0.98153 0.99841 0.98250 1.69675 1.35305 1.33392 1.19658 0.86140 0.84528 0.77266 0.78391 1.20549 1.21911 1.21886 1.22687 1.01667 1.00072 0.94763 1.22621 0.79523 1.00845 1.00886 1.48061 1.07679 1.56814 1.20082 1.18254 0.86029 0.78054 0.82974 1.90820 1.15191 1.55814 1.79499 1.19727 0.95399 0.99169 0.96266 1.21647 0.94856 1.01144 0.96168 1.20345 0.99829 0.96247 0.94319 1.20683 0.94482 0.99956 0.97434 1.19511 0.92720 0.97080 0.92080 1.20409 1.00050 0.97067 0.92641 1.60627 1.25550 1.13651 1.19442 1.22597 0.99140 0.93667 0.97870 1.23300 0.89727 0.96693 0.98472 1.21343 0.99650 0.95853 0.95454 0.91083 0.91420 0.93840 0.90595 0.91780 0.78273 0.93552 0.92225 0.90614 0.91289 0.88259 0.83635 0.85340 0.85118 0.94066 0.90480 0.90415 0.91982 0.88599 0.89721 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 7.59 37.15 0.28 -1.69 16 2 C 0.15 2.16 3.49 -67.60 -0.24 1.93 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.27 4.84 -26.62 -0.13 -2.40 16 5 C 0.18 3.40 2.73 -67.89 -0.19 3.22 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 N -0.72 -17.72 5.12 -53.38 -0.27 -17.99 16 8 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 9 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 12 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 C -0.15 -2.53 5.66 -26.61 -0.15 -2.68 16 17 C 0.08 1.09 4.70 -3.71 -0.02 1.07 16 18 N -0.59 -8.48 2.97 -166.33 -0.49 -8.97 16 19 C 0.56 8.36 7.37 -12.32 -0.09 8.27 16 20 O -0.53 -9.15 12.08 5.32 0.06 -9.09 16 21 C -0.10 -1.32 5.47 -105.06 -0.58 -1.90 16 22 C -0.12 -1.28 7.41 -39.15 -0.29 -1.57 16 23 C -0.09 -0.84 10.01 -39.73 -0.40 -1.24 16 24 C -0.12 -1.22 6.23 -103.91 -0.65 -1.86 16 25 C 0.08 0.94 5.95 -83.42 -0.50 0.45 16 26 C -0.08 -1.01 9.07 -38.86 -0.35 -1.37 16 27 N -0.48 -4.59 5.31 -176.87 -0.94 -5.53 16 28 C 0.01 0.11 9.16 60.07 0.55 0.66 16 29 C 0.04 0.31 6.91 -2.44 -0.02 0.29 16 30 C -0.09 -0.60 7.04 -26.59 -0.19 -0.79 16 31 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 32 H 0.07 1.03 6.75 -51.93 -0.35 0.68 16 33 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 36 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 41 H 0.10 1.15 4.08 -51.93 -0.21 0.94 16 42 H 0.15 1.38 5.34 -52.48 -0.28 1.10 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.13 1.68 7.19 -52.49 -0.38 1.30 16 45 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.65 7.30 -51.93 -0.38 0.27 16 48 H 0.06 0.39 7.84 -51.92 -0.41 -0.02 16 49 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -32.03 391.30 -11.36 -43.38 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -8.13 Total: 9.18 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.19 Total: -6.69 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.98 Total: -59.70 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.06 Total: -9.09 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.03 -11.36 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044836924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.438 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds