Wall clock time and date at job start Wed Apr 1 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.58938 * 2 1 4 4 C 1.53188 * 109.58879 * 239.71442 * 2 1 3 5 5 C 1.53037 * 109.31476 * 185.58268 * 4 2 1 6 6 H 1.09003 * 109.45791 * 301.35488 * 5 4 2 7 7 N 1.46505 * 109.46257 * 181.38342 * 5 4 2 8 8 C 1.36932 * 120.00173 * 154.99290 * 7 5 4 9 9 H 1.08009 * 120.00217 * 359.73111 * 8 7 5 10 10 C 1.38810 * 120.00269 * 179.72660 * 8 7 5 11 11 N 1.31626 * 119.99905 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00152 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47036 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46865 * 119.99934 * 12 10 8 15 15 H 1.48498 * 109.47089 * 239.99862 * 12 10 8 16 16 C 1.53040 * 109.54084 * 61.36172 * 5 4 2 17 17 C 1.53191 * 109.31074 * 298.63618 * 16 5 4 18 18 N 1.46923 * 108.77709 * 54.63665 * 17 16 5 19 19 C 1.34773 * 120.63419 * 126.36332 * 18 17 16 20 20 O 1.21549 * 120.00357 * 186.23157 * 19 18 17 21 21 C 1.47865 * 119.99923 * 6.23604 * 19 18 17 22 22 C 1.39619 * 120.02581 * 28.76570 * 21 19 18 23 23 C 1.37996 * 119.74142 * 179.90611 * 22 21 19 24 24 C 1.38084 * 120.28117 * 0.51862 * 23 22 21 25 25 C 1.39082 * 120.71233 * 359.45789 * 24 23 22 26 26 C 1.39159 * 119.23935 * 0.41474 * 25 24 23 27 27 N 1.40105 * 110.92914 * 180.75304 * 25 24 23 28 28 C 1.46906 * 110.99774 * 219.53406 * 27 25 24 29 29 C 1.47898 * 107.85028 * 341.32975 * 27 25 24 30 30 C 1.51628 * 131.37171 * 179.08782 * 24 23 22 31 31 H 1.09004 * 109.47438 * 183.16039 * 1 2 3 32 32 H 1.09005 * 109.47709 * 303.16144 * 1 2 3 33 33 H 1.09009 * 109.47013 * 63.15973 * 1 2 3 34 34 H 1.09001 * 109.49930 * 65.62625 * 4 2 1 35 35 H 1.09008 * 109.49745 * 305.52977 * 4 2 1 36 36 H 0.97004 * 119.99875 * 334.72617 * 7 5 4 37 37 H 0.96991 * 120.00009 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.49869 * 58.58916 * 16 5 4 39 39 H 1.09004 * 109.49758 * 178.68484 * 16 5 4 40 40 H 1.08992 * 109.58767 * 294.84468 * 17 16 5 41 41 H 1.09000 * 109.69943 * 174.49383 * 17 16 5 42 42 H 1.08003 * 120.12661 * 0.14207 * 22 21 19 43 43 H 1.08001 * 119.85719 * 180.25237 * 23 22 21 44 44 H 1.08002 * 119.96111 * 179.70874 * 26 25 24 45 45 H 1.09000 * 109.47232 * 60.00004 * 28 27 25 46 46 H 1.08998 * 109.46881 * 179.97438 * 28 27 25 47 47 H 1.08995 * 109.47213 * 299.99849 * 28 27 25 48 48 H 1.09008 * 110.77528 * 269.16651 * 29 27 25 49 49 H 1.09003 * 110.78004 * 145.74126 * 29 27 25 50 50 H 1.08999 * 110.73837 * 314.47719 * 30 24 23 51 51 H 1.09000 * 110.73604 * 77.79410 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5674 -0.8466 -1.1711 6 1 4.0061 0.1486 -1.0988 7 7 4.0652 -1.5130 -2.3771 8 6 5.3496 -1.2954 -2.7989 9 1 5.9945 -0.6292 -2.2449 10 6 5.8231 -1.9312 -3.9384 11 7 5.0372 -2.7428 -4.6138 12 14 7.5756 -1.6349 -4.5134 13 1 8.2467 -0.6873 -3.5878 14 1 8.3161 -2.9221 -4.5276 15 1 7.5568 -1.0595 -5.8822 16 6 3.9568 -1.6658 0.0616 17 6 3.4649 -0.9485 1.3226 18 7 2.0224 -0.7010 1.1937 19 6 1.1672 -1.1096 2.1518 20 8 -0.0316 -1.0011 1.9829 21 6 1.6872 -1.6897 3.4086 22 6 2.9388 -1.3026 3.8913 23 6 3.4176 -1.8463 5.0659 24 6 2.6691 -2.7778 5.7579 25 6 1.4203 -3.1740 5.2912 26 6 0.9316 -2.6270 4.1086 27 7 0.8364 -4.1091 6.1558 28 6 0.1425 -5.1618 5.4018 29 6 1.9100 -4.6802 6.9977 30 6 2.9509 -3.5381 7.0391 31 1 -0.3634 -1.0261 0.0567 32 1 -0.3635 0.5621 0.8603 33 1 -0.3633 0.4640 -0.9170 34 1 1.7660 -0.1642 -2.1370 35 1 1.6029 -1.7238 -1.2934 36 1 3.4861 -2.1113 -2.8747 37 1 5.3681 -3.1873 -5.4098 38 1 3.4982 -2.6529 0.0022 39 1 5.0411 -1.7698 0.1017 40 1 3.9902 0.0002 1.4318 41 1 3.6519 -1.5723 2.1967 42 1 3.5283 -0.5777 3.3496 43 1 4.3837 -1.5452 5.4431 44 1 -0.0347 -2.9299 3.7330 45 1 0.8551 -5.6779 4.7585 46 1 -0.3011 -5.8744 6.0972 47 1 -0.6411 -4.7143 4.7904 48 1 2.3324 -5.5716 6.5337 49 1 1.5397 -4.9024 7.9985 50 1 3.9644 -3.9393 7.0349 51 1 2.7905 -2.9012 7.9090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044836924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:25 Heat of formation + Delta-G solvation = 29.678305 kcal Electronic energy + Delta-G solvation = -30561.547419 eV Core-core repulsion = 26654.443639 eV Total energy + Delta-G solvation = -3907.103781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15578 -41.22648 -38.79680 -37.71934 -36.20616 -34.28181 -33.75457 -33.44611 -31.10961 -30.98270 -30.02005 -28.38558 -26.74807 -26.09857 -24.96629 -24.64901 -22.94846 -22.64503 -22.02035 -21.45410 -20.31730 -19.12605 -18.10514 -17.44136 -17.16676 -16.81812 -16.67066 -16.42132 -16.33092 -16.10125 -15.50025 -15.42062 -15.15447 -14.82489 -14.69176 -14.50475 -14.31889 -14.08338 -13.96342 -13.64807 -13.47414 -13.43362 -13.10600 -13.06590 -12.88989 -12.81852 -12.63237 -12.61511 -12.39126 -12.27077 -12.10022 -12.05576 -11.98616 -11.91431 -11.63876 -11.35479 -10.97782 -10.78425 -10.19742 -9.88246 -9.58626 -9.01012 -8.74623 -7.92285 -5.21231 -0.14106 0.32565 1.48942 1.49495 1.59399 1.70948 1.90128 2.56873 2.60861 2.83869 3.39425 3.42423 3.57846 3.66262 3.73397 3.83399 3.94780 4.04316 4.09615 4.14782 4.19456 4.20472 4.29093 4.32596 4.39142 4.45816 4.50665 4.56434 4.62088 4.70197 4.72877 4.77434 4.80129 4.85022 4.86908 4.93646 5.00541 5.02025 5.05785 5.12005 5.16277 5.24377 5.33878 5.39125 5.42338 5.50354 5.54908 5.58884 5.70348 5.89872 6.09399 6.29091 6.39871 7.11798 7.34972 8.10376 8.33661 9.31746 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.002657 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.340478 B =10535.157445 C =11562.298133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.151 3.849 3 H 0.093 0.907 4 C -0.124 4.124 5 C 0.174 3.826 6 H 0.054 0.946 7 N -0.739 5.739 8 C -0.231 4.231 9 H 0.082 0.918 10 C -0.081 4.081 11 N -0.974 5.974 12 Si 0.971 3.029 13 H -0.261 1.261 14 H -0.297 1.297 15 H -0.298 1.298 16 C -0.140 4.140 17 C 0.092 3.908 18 N -0.595 5.595 19 C 0.555 3.445 20 O -0.565 6.565 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.084 4.084 24 C -0.125 4.125 25 C 0.073 3.927 26 C -0.101 4.101 27 N -0.492 5.492 28 C 0.014 3.986 29 C 0.041 3.959 30 C -0.082 4.082 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.369 0.631 37 H 0.249 0.751 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.119 0.881 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.113 0.887 45 H 0.037 0.963 46 H 0.097 0.903 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.115 0.885 50 H 0.106 0.894 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 0.201 27.212 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 H 0.111 0.889 4 C -0.163 4.163 5 C 0.065 3.935 6 H 0.072 0.928 7 N -0.377 5.377 8 C -0.363 4.363 9 H 0.100 0.900 10 C -0.272 4.272 11 N -0.625 5.625 12 Si 0.801 3.199 13 H -0.185 1.185 14 H -0.224 1.224 15 H -0.225 1.225 16 C -0.181 4.181 17 C -0.030 4.030 18 N -0.327 5.327 19 C 0.345 3.655 20 O -0.446 6.446 21 C -0.125 4.125 22 C -0.139 4.139 23 C -0.103 4.103 24 C -0.128 4.128 25 C -0.025 4.025 26 C -0.123 4.123 27 N -0.206 5.206 28 C -0.132 4.132 29 C -0.084 4.084 30 C -0.119 4.119 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.200 0.800 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.180 0.820 43 H 0.179 0.821 44 H 0.131 0.869 45 H 0.056 0.944 46 H 0.116 0.884 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.133 0.867 50 H 0.124 0.876 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.166 0.513 27.466 27.953 hybrid contribution 0.686 -0.856 -1.820 2.125 sum -4.480 -0.343 25.646 26.037 Atomic orbital electron populations 1.22054 0.92868 1.02287 1.00879 1.21309 0.95364 0.95594 0.82896 0.88912 1.22156 0.96051 1.00284 0.97780 1.20426 0.92052 0.94937 0.86039 0.92796 1.42690 1.12270 1.54429 1.28357 1.19684 0.89988 1.20608 1.05990 0.90032 1.25574 1.02074 1.00548 0.99049 1.69841 1.37181 1.35221 1.20256 0.85096 0.80101 0.77041 0.77692 1.18499 1.22420 1.22506 1.22475 1.01161 0.98987 0.95509 1.22705 0.78741 1.02181 0.99334 1.48099 1.08187 1.56620 1.19755 1.18629 0.85707 0.77481 0.83687 1.90801 1.16504 1.56961 1.80304 1.19629 0.96817 1.00287 0.95792 1.21820 0.93889 1.01310 0.96857 1.20712 1.00850 0.95247 0.93448 1.21162 0.93680 0.99597 0.98356 1.19697 0.93510 0.97578 0.91748 1.20368 0.99795 0.98190 0.93914 1.60664 1.26565 1.14024 1.19357 1.22608 0.98756 0.93631 0.98199 1.23471 0.89123 0.96892 0.98903 1.21454 1.00742 0.95537 0.94167 0.93341 0.91846 0.92541 0.90955 0.93646 0.80003 0.94254 0.94370 0.91128 0.88432 0.86308 0.82044 0.82095 0.86900 0.94402 0.88434 0.91660 0.91308 0.86709 0.87598 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 7.59 71.98 0.55 -3.11 16 2 C 0.15 4.33 3.49 44.97 0.16 4.48 16 3 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.12 -4.18 4.84 30.67 0.15 -4.03 16 5 C 0.17 6.53 2.73 45.02 0.12 6.65 16 6 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 7 N -0.74 -36.56 5.12 -322.80 -1.65 -38.21 16 8 C -0.23 -12.40 9.93 84.03 0.83 -11.57 16 9 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 10 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 11 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 12 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 13 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 14 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 15 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 16 C -0.14 -4.58 5.66 30.67 0.17 -4.41 16 17 C 0.09 2.20 4.70 86.36 0.41 2.60 16 18 N -0.59 -16.42 2.97 -798.42 -2.37 -18.79 16 19 C 0.55 16.68 7.37 86.79 0.64 17.32 16 20 O -0.56 -20.04 12.08 -3.87 -0.05 -20.08 16 21 C -0.12 -3.11 5.47 -20.15 -0.11 -3.22 16 22 C -0.12 -2.29 7.41 22.55 0.17 -2.12 16 23 C -0.08 -1.32 10.01 22.18 0.22 -1.10 16 24 C -0.12 -2.15 6.23 -19.40 -0.12 -2.27 16 25 C 0.07 1.58 5.95 38.24 0.23 1.80 16 26 C -0.10 -2.61 9.07 22.74 0.21 -2.41 16 27 N -0.49 -8.83 5.31 -713.50 -3.79 -12.62 16 28 C 0.01 0.23 9.16 127.69 1.17 1.40 16 29 C 0.04 0.46 6.91 86.65 0.60 1.06 16 30 C -0.08 -0.86 7.04 30.68 0.22 -0.65 16 31 H 0.05 1.64 6.75 -2.38 -0.02 1.63 16 32 H 0.06 1.94 6.75 -2.38 -0.02 1.92 16 33 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.37 20.18 7.80 -92.71 -0.72 19.46 16 37 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 39 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.10 1.85 8.00 -2.39 -0.02 1.83 16 41 H 0.12 2.45 4.08 -2.39 -0.01 2.44 16 42 H 0.16 2.48 5.34 -2.91 -0.02 2.46 16 43 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.11 3.19 7.19 -2.91 -0.02 3.16 16 45 H 0.04 0.61 8.09 -2.39 -0.02 0.59 16 46 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 1.17 7.30 -2.39 -0.02 1.15 16 48 H 0.07 0.68 7.84 -2.38 -0.02 0.67 16 49 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -71.35 391.30 0.73 -70.62 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 0.21 Total: 34.83 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 6.07 Total: -3.68 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -7.53 Total: -129.11 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.08 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.35 0.73 -70.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044836924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.299 kcal (2) G-P(sol) polarization free energy of solvation -71.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds