Wall clock time and date at job start Wed Apr 1 2020 03:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.70068 * 2 1 4 4 C 1.52755 * 109.43615 * 120.16767 * 2 1 3 5 5 C 1.53042 * 109.38181 * 65.42154 * 4 2 1 6 6 H 1.08997 * 109.45166 * 301.22372 * 5 4 2 7 7 N 1.46508 * 109.45954 * 181.26386 * 5 4 2 8 8 C 1.36937 * 120.00076 * 154.93668 * 7 5 4 9 9 H 1.07993 * 119.99773 * 359.97438 * 8 7 5 10 10 C 1.38808 * 119.99870 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00148 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 120.00124 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46580 * 90.00555 * 12 10 8 14 14 H 1.48500 * 109.47031 * 210.00385 * 12 10 8 15 15 H 1.48496 * 109.47101 * 330.00414 * 12 10 8 16 16 C 1.53035 * 109.53676 * 61.24653 * 5 4 2 17 17 C 1.53195 * 109.31024 * 298.62776 * 16 5 4 18 18 N 1.46927 * 108.77263 * 54.64048 * 17 16 5 19 19 C 1.34777 * 120.63138 * 126.36682 * 18 17 16 20 20 O 1.21284 * 119.99933 * 179.97438 * 19 18 17 21 21 C 1.50695 * 120.00131 * 359.97438 * 19 18 17 22 22 N 1.46902 * 109.47048 * 174.53366 * 21 19 18 23 23 C 1.47908 * 111.00084 * 284.19477 * 22 21 19 24 24 C 1.54597 * 102.62927 * 265.43203 * 23 22 21 25 25 C 1.51581 * 102.83066 * 334.44637 * 24 23 22 26 26 C 1.37914 * 131.56485 * 196.25297 * 25 24 23 27 27 C 1.38311 * 120.07719 * 179.59824 * 26 25 24 28 28 C 1.38305 * 119.88291 * 359.92939 * 27 26 25 29 29 C 1.37907 * 120.26643 * 0.12124 * 28 27 26 30 30 C 1.38966 * 107.94739 * 16.02101 * 25 24 23 31 31 H 1.09007 * 109.46706 * 180.35515 * 1 2 3 32 32 H 1.08997 * 109.47130 * 300.35202 * 1 2 3 33 33 H 1.09000 * 109.47130 * 60.35404 * 1 2 3 34 34 H 1.09003 * 109.56341 * 305.39095 * 4 2 1 35 35 H 1.08998 * 109.38882 * 185.35123 * 4 2 1 36 36 H 0.97000 * 119.99883 * 334.93028 * 7 5 4 37 37 H 0.96999 * 120.00020 * 180.02562 * 11 10 8 38 38 H 1.09008 * 109.49935 * 178.68271 * 16 5 4 39 39 H 1.08998 * 109.50389 * 58.58252 * 16 5 4 40 40 H 1.08995 * 109.58902 * 294.84755 * 17 16 5 41 41 H 1.09001 * 109.58311 * 174.42030 * 17 16 5 42 42 H 1.08997 * 109.46936 * 54.53428 * 21 19 18 43 43 H 1.09000 * 109.47380 * 294.53482 * 21 19 18 44 44 H 1.08997 * 110.77394 * 147.14366 * 23 22 21 45 45 H 1.08995 * 110.77669 * 23.71680 * 23 22 21 46 46 H 1.08998 * 110.74020 * 216.11209 * 24 23 22 47 47 H 1.09001 * 110.90097 * 92.84868 * 24 23 22 48 48 H 1.07997 * 119.96481 * 359.62880 * 26 25 24 49 49 H 1.07996 * 120.05490 * 179.90377 * 27 26 25 50 50 H 1.07999 * 119.86296 * 179.84732 * 28 27 26 51 51 H 1.07994 * 119.89830 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0383 -0.7239 1.2454 5 6 1.6410 -2.2001 1.1725 6 1 0.5565 -2.2809 1.0994 7 7 2.1015 -2.8897 2.3803 8 6 1.4660 -4.0262 2.8042 9 1 0.6252 -4.4139 2.2484 10 6 1.9020 -4.6792 3.9488 11 7 1.2915 -5.7719 4.3560 12 14 3.3560 -4.0081 4.9107 13 1 2.8706 -3.0541 5.9400 14 1 4.0714 -5.1286 5.5723 15 1 4.2817 -3.3081 3.9842 16 6 2.2844 -2.8430 -0.0583 17 6 1.7740 -2.1420 -1.3212 18 7 2.0225 -0.6995 -1.1946 19 6 2.6944 -0.0316 -2.1533 20 8 2.8927 1.1592 -2.0372 21 6 3.1991 -0.7645 -3.3694 22 7 3.7765 0.1983 -4.3168 23 6 2.7151 0.9425 -5.0291 24 6 2.5421 0.1234 -6.3288 25 6 3.8946 -0.5418 -6.4900 26 6 4.4885 -1.1570 -7.5721 27 6 5.7606 -1.6875 -7.4557 28 6 6.4368 -1.5987 -6.2525 29 6 5.8469 -0.9855 -5.1672 30 6 4.5637 -0.4514 -5.2755 31 1 -0.3633 -1.0277 0.0064 32 1 -0.3633 0.5193 0.8868 33 1 -0.3633 0.5083 -0.8931 34 1 1.5988 -0.2724 2.1349 35 1 3.1241 -0.6413 1.2941 36 1 2.8566 -2.5412 2.8797 37 1 1.5960 -6.2280 5.1561 38 1 2.0201 -3.8998 -0.0968 39 1 3.3679 -2.7404 0.0021 40 1 0.7044 -2.3204 -1.4311 41 1 2.3025 -2.5287 -2.1926 42 1 2.3721 -1.2913 -3.8454 43 1 3.9629 -1.4823 -3.0701 44 1 3.0391 1.9589 -5.2528 45 1 1.7918 0.9485 -4.4500 46 1 2.3315 0.7794 -7.1734 47 1 1.7558 -0.6231 -6.2162 48 1 3.9601 -1.2242 -8.5115 49 1 6.2247 -2.1705 -8.3028 50 1 7.4290 -2.0153 -6.1613 51 1 6.3804 -0.9192 -4.2307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044863115.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:39 Heat of formation + Delta-G solvation = 29.185678 kcal Electronic energy + Delta-G solvation = -30426.932456 eV Core-core repulsion = 26519.807313 eV Total energy + Delta-G solvation = -3907.125142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27118 -40.07033 -37.84566 -36.74553 -34.69990 -33.06872 -32.35168 -31.87970 -30.30940 -29.80233 -29.18663 -27.50394 -26.89630 -24.22667 -23.35482 -22.92888 -22.06682 -21.52711 -21.17240 -20.24596 -18.50337 -17.66366 -17.22869 -16.89998 -16.44459 -15.89290 -15.60569 -15.28072 -15.10636 -14.99084 -14.21278 -14.08720 -13.94479 -13.80596 -13.74363 -13.40423 -13.35160 -12.95970 -12.84545 -12.79409 -12.61930 -12.55826 -12.14307 -12.03864 -11.83412 -11.81790 -11.51564 -11.45084 -11.16173 -11.06078 -10.97820 -10.86409 -10.57088 -10.24686 -10.09597 -9.77694 -9.62512 -9.43400 -9.09807 -8.96122 -8.55704 -8.16187 -7.32357 -5.81572 -3.17424 0.99643 1.09590 2.63066 2.82141 3.34974 3.38447 3.38804 3.43141 3.49239 4.22584 4.42646 4.45103 4.55451 4.65464 4.73053 4.80310 4.87490 4.92116 5.00986 5.04869 5.09918 5.13329 5.17582 5.20994 5.30386 5.37550 5.39928 5.50601 5.51027 5.53324 5.61634 5.65267 5.70597 5.77621 5.80088 5.97296 6.01389 6.06156 6.12561 6.17600 6.22167 6.22793 6.33615 6.36538 6.42980 6.49996 6.60695 6.78651 6.90990 6.97753 7.46639 7.93803 8.22324 8.37564 9.15782 9.88752 10.08459 11.36589 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.002531 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.177491 B =11060.475021 C =12017.481990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.096 0.904 4 C -0.138 4.138 5 C 0.184 3.816 6 H 0.060 0.940 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.603 5.603 19 C 0.515 3.485 20 O -0.527 6.527 21 C 0.041 3.959 22 N -0.474 5.474 23 C 0.060 3.940 24 C -0.114 4.114 25 C -0.139 4.139 26 C -0.090 4.090 27 C -0.133 4.133 28 C -0.104 4.104 29 C -0.110 4.110 30 C 0.092 3.908 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.120 0.880 49 H 0.124 0.876 50 H 0.127 0.873 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 11.044 -24.345 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.114 0.886 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.078 0.922 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.193 4.193 17 C -0.017 4.017 18 N -0.338 5.338 19 C 0.302 3.698 20 O -0.403 6.403 21 C -0.088 4.088 22 N -0.190 5.190 23 C -0.067 4.067 24 C -0.152 4.152 25 C -0.141 4.141 26 C -0.109 4.109 27 C -0.151 4.151 28 C -0.122 4.122 29 C -0.130 4.130 30 C -0.005 4.005 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.124 0.876 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.138 0.862 49 H 0.142 0.858 50 H 0.145 0.855 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.031 11.847 -23.859 26.942 hybrid contribution 0.694 -0.379 0.394 0.884 sum 4.725 11.468 -23.465 26.541 Atomic orbital electron populations 1.22148 0.94930 1.02864 1.01927 1.21041 0.94062 0.97092 0.83726 0.88619 1.22185 1.01317 0.97309 0.96889 1.20164 0.97379 0.88797 0.86229 0.92202 1.42810 1.37773 1.30527 1.27896 1.19047 1.11288 0.99881 1.07158 0.89202 1.24671 0.98946 0.97239 0.98209 1.69698 1.42866 1.19560 1.25964 0.86564 0.83465 0.78157 0.80404 1.21076 1.21783 1.20350 1.22647 1.01036 1.00932 0.94676 1.21855 1.01151 0.79279 0.99461 1.48265 1.55459 1.09501 1.20557 1.20329 0.77901 0.87646 0.83942 1.90685 1.56521 1.14877 1.78243 1.22134 1.00324 0.94010 0.92294 1.59657 1.20093 1.23694 1.15591 1.23122 0.93748 0.98049 0.91787 1.21756 0.94336 0.99285 0.99789 1.21023 0.96285 1.01181 0.95639 1.20399 0.95165 0.97809 0.97493 1.21070 0.94991 1.01121 0.97928 1.20953 0.99947 0.98738 0.92584 1.20570 0.92915 0.99699 0.99792 1.19548 0.94042 0.95744 0.91120 0.91552 0.91317 0.92897 0.90446 0.91984 0.80661 0.93038 0.90153 0.92270 0.91158 0.90723 0.91054 0.87573 0.88957 0.89735 0.89459 0.90058 0.86209 0.85758 0.85507 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.02 37.16 0.34 -1.58 16 2 C 0.14 1.94 3.19 -67.82 -0.22 1.72 16 3 H 0.10 1.38 7.01 -51.93 -0.36 1.02 16 4 C -0.14 -2.11 4.99 -26.84 -0.13 -2.24 16 5 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 6 H 0.06 1.09 6.43 -51.93 -0.33 0.75 16 7 N -0.75 -16.88 4.92 -53.39 -0.26 -17.14 16 8 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.71 13.97 55.49 0.78 -27.93 16 12 Si 0.88 21.81 27.74 -169.99 -4.71 17.09 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 15 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 16 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 17 C 0.11 1.26 5.89 -3.71 -0.02 1.23 16 18 N -0.60 -7.77 2.68 -165.48 -0.44 -8.21 16 19 C 0.52 6.97 7.16 -10.99 -0.08 6.89 16 20 O -0.53 -8.84 15.37 5.55 0.09 -8.75 16 21 C 0.04 0.45 3.60 -4.98 -0.02 0.43 16 22 N -0.47 -5.54 4.60 -170.39 -0.78 -6.32 16 23 C 0.06 0.59 6.36 -2.43 -0.02 0.57 16 24 C -0.11 -0.91 6.92 -26.61 -0.18 -1.09 16 25 C -0.14 -1.32 6.23 -104.04 -0.65 -1.97 16 26 C -0.09 -0.75 10.03 -39.67 -0.40 -1.15 16 27 C -0.13 -1.03 10.06 -39.53 -0.40 -1.43 16 28 C -0.10 -0.86 10.02 -39.68 -0.40 -1.26 16 29 C -0.11 -1.10 10.05 -39.27 -0.39 -1.50 16 30 C 0.09 1.00 5.49 -83.40 -0.46 0.54 16 31 H 0.07 0.82 5.74 -51.93 -0.30 0.52 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.36 8.17 5.66 -40.82 -0.23 7.94 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.08 1.36 8.14 -51.92 -0.42 0.93 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.78 7.52 -51.93 -0.39 0.39 16 41 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 42 H 0.07 0.66 7.47 -51.93 -0.39 0.27 16 43 H 0.11 1.12 7.75 -51.93 -0.40 0.72 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.08 0.84 7.30 -51.93 -0.38 0.46 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 49 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 50 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 51 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 395.81 15.07 5.96 5.96 Total: -1.00 -32.92 395.81 -11.16 -44.08 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -8.18 Total: 8.16 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.60 Total: -6.95 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.71 Total: -59.60 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.92 -11.16 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044863115.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.268 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds