Wall clock time and date at job start Wed Apr 1 2020 03:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 115.56080 * 2 1 4 4 C 1.53070 * 117.50927 * 214.29712 * 2 1 3 5 5 C 1.52999 * 59.98524 * 252.52622 * 4 2 1 6 6 H 1.09005 * 117.49873 * 252.50445 * 5 4 2 7 7 C 1.50694 * 117.50169 * 107.50282 * 5 4 2 8 8 O 1.21280 * 120.00181 * 291.25476 * 7 5 4 9 9 N 1.34781 * 120.00153 * 111.25583 * 7 5 4 10 10 C 1.46495 * 120.00109 * 180.02562 * 9 7 5 11 11 C 1.50693 * 109.47336 * 269.99792 * 10 9 7 12 12 C 1.38229 * 119.62020 * 95.00078 * 11 10 9 13 13 C 1.38629 * 119.16399 * 180.02562 * 12 11 10 14 14 C 1.38669 * 118.41835 * 0.24731 * 13 12 11 15 15 C 1.38180 * 119.16633 * 359.52867 * 14 13 12 16 16 N 1.31858 * 119.62114 * 275.02348 * 11 10 9 17 17 C 1.46502 * 119.99636 * 0.02562 * 9 7 5 18 18 C 1.53042 * 109.45890 * 240.06955 * 17 9 7 19 19 C 1.53189 * 109.31337 * 178.61844 * 18 17 9 20 20 N 1.46922 * 108.77827 * 54.63397 * 19 18 17 21 21 C 1.36937 * 120.63276 * 126.41816 * 20 19 18 22 22 H 1.08000 * 119.99762 * 207.65896 * 21 20 19 23 23 C 1.38813 * 120.00136 * 27.65382 * 21 20 19 24 24 N 1.31621 * 119.99648 * 17.38047 * 23 21 20 25 25 Si 1.86795 * 120.00023 * 197.38230 * 23 21 20 26 26 H 1.48502 * 109.47115 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47187 * 119.99978 * 25 23 21 28 28 H 1.48503 * 109.47087 * 240.00215 * 25 23 21 29 29 C 1.46931 * 118.73492 * 306.39174 * 20 19 18 30 30 C 1.53036 * 109.45997 * 120.00394 * 17 9 7 31 31 H 1.09008 * 109.47260 * 274.30996 * 1 2 3 32 32 H 1.09001 * 109.47313 * 34.30740 * 1 2 3 33 33 H 1.08996 * 109.47279 * 154.31218 * 1 2 3 34 34 H 1.09003 * 117.49492 * 145.04236 * 4 2 1 35 35 H 1.08999 * 117.53686 * 359.97438 * 4 2 1 36 36 H 1.09006 * 109.47183 * 150.00061 * 10 9 7 37 37 H 1.08995 * 109.47403 * 30.00025 * 10 9 7 38 38 H 1.08001 * 120.41790 * 359.97438 * 12 11 10 39 39 H 1.07995 * 120.78569 * 179.97438 * 13 12 11 40 40 H 1.08001 * 120.42048 * 179.75282 * 14 13 12 41 41 H 1.08000 * 119.62336 * 180.20595 * 15 14 13 42 42 H 1.08993 * 109.46303 * 0.02671 * 17 9 7 43 43 H 1.09007 * 109.49732 * 298.56863 * 18 17 9 44 44 H 1.08995 * 109.50030 * 58.66331 * 18 17 9 45 45 H 1.09003 * 109.58536 * 294.84654 * 19 18 17 46 46 H 1.09000 * 109.58911 * 174.42190 * 19 18 17 47 47 H 0.97004 * 119.99600 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.58669 * 293.81536 * 29 20 19 49 49 H 1.09003 * 109.69787 * 173.46866 * 29 20 19 50 50 H 1.09005 * 109.49502 * 301.33433 * 30 17 9 51 51 H 1.08998 * 109.49985 * 61.39934 * 30 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2370 -1.1216 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 3.1713 -0.8751 1.2686 7 6 1.3719 -2.1406 1.4608 8 8 0.1637 -2.0523 1.4026 9 7 1.9414 -3.1506 2.1479 10 6 1.1010 -4.1421 2.8239 11 6 0.8141 -3.6824 4.2301 12 6 -0.3532 -2.9924 4.4985 13 6 -0.6073 -2.5736 5.7954 14 6 0.3288 -2.8612 6.7771 15 6 1.4710 -3.5593 6.4347 16 7 1.6797 -3.9427 5.1902 17 6 3.4008 -3.2569 2.2188 18 6 3.8449 -4.5906 1.6135 19 6 5.3733 -4.6832 1.6579 20 7 5.8201 -4.4699 3.0412 21 6 6.6359 -5.3798 3.6591 22 1 6.6093 -5.4865 4.7335 23 6 7.4968 -6.1649 2.9046 24 7 7.7885 -5.8203 1.6683 25 14 8.2413 -7.7103 3.6439 26 1 7.7585 -7.8739 5.0387 27 1 7.8358 -8.8896 2.8377 28 1 9.7219 -7.5957 3.6434 29 6 5.3754 -3.2614 3.7487 30 6 3.8469 -3.1847 3.6809 31 1 -0.3634 0.0772 1.0248 32 1 -0.3634 0.8489 -0.5792 33 1 -0.3633 -0.9261 -0.4454 34 1 3.1723 -0.8757 -1.2679 35 1 1.6126 -1.8599 -1.2680 36 1 1.6212 -5.0995 2.8537 37 1 0.1632 -4.2548 2.2801 38 1 -1.0579 -2.7816 3.7078 39 1 -1.5107 -2.0323 6.0344 40 1 0.1655 -2.5467 7.7974 41 1 2.2034 -3.7902 7.1941 42 1 3.8522 -2.4368 1.6605 43 1 3.4138 -5.4116 2.1865 44 1 3.5066 -4.6513 0.5792 45 1 5.8047 -3.9180 1.0125 46 1 5.6896 -5.6701 1.3199 47 1 8.3904 -6.3688 1.1411 48 1 5.8069 -2.3803 3.2738 49 1 5.6932 -3.3076 4.7903 50 1 3.5100 -2.2447 4.1180 51 1 3.4154 -4.0186 4.2345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048625262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:06 Heat of formation + Delta-G solvation = 61.156171 kcal Electronic energy + Delta-G solvation = -31698.488657 eV Core-core repulsion = 27792.749859 eV Total energy + Delta-G solvation = -3905.738798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.71601 -39.76331 -37.84837 -36.55207 -35.03914 -32.65872 -32.44770 -31.59002 -30.03054 -29.37599 -28.72656 -27.14113 -25.07532 -23.78611 -23.48623 -22.24895 -22.11433 -21.76902 -20.88147 -19.26416 -18.34983 -17.32741 -16.95827 -16.64492 -16.08313 -15.71185 -15.59973 -15.24591 -14.76070 -14.43951 -14.04001 -13.89486 -13.62128 -13.41064 -13.26179 -13.10768 -13.01835 -12.87831 -12.59696 -12.58642 -12.35914 -12.17989 -11.85111 -11.73759 -11.49072 -11.37231 -11.05816 -10.75901 -10.70453 -10.34581 -10.28353 -10.24678 -10.10184 -9.98327 -9.82495 -9.70185 -9.67049 -9.34576 -9.10037 -8.93264 -8.52640 -8.29227 -6.65184 -5.76957 -3.17654 1.06599 1.29825 2.60713 3.11545 3.38888 3.47119 3.49453 3.77971 3.93567 4.31042 4.52341 4.54558 4.66569 4.74363 4.83833 4.85788 5.04537 5.08009 5.14876 5.28319 5.32562 5.42938 5.47162 5.49769 5.54963 5.65225 5.69454 5.75845 5.78373 5.79044 5.85895 5.88981 6.00126 6.07796 6.13364 6.16556 6.20411 6.34848 6.39395 6.47161 6.56980 6.60937 6.66155 6.73549 6.81587 6.86640 7.21987 7.39089 7.59272 7.69426 7.83331 8.05872 8.33566 8.47485 9.23950 9.87592 10.43937 11.31894 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010017 B = 0.004119 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.575314 B = 6796.534770 C = 8940.920666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.123 4.123 3 H 0.108 0.892 4 C -0.147 4.147 5 C -0.191 4.191 6 H 0.124 0.876 7 C 0.546 3.454 8 O -0.547 6.547 9 N -0.592 5.592 10 C 0.164 3.836 11 C 0.114 3.886 12 C -0.151 4.151 13 C -0.083 4.083 14 C -0.176 4.176 15 C 0.097 3.903 16 N -0.455 5.455 17 C 0.143 3.857 18 C -0.147 4.147 19 C 0.175 3.825 20 N -0.590 5.590 21 C -0.246 4.246 22 H 0.066 0.934 23 C 0.001 3.999 24 N -0.904 5.904 25 Si 0.899 3.101 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.291 1.291 29 C 0.151 3.849 30 C -0.152 4.152 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.018 0.982 46 H 0.090 0.910 47 H 0.252 0.748 48 H 0.011 0.989 49 H 0.054 0.946 50 H 0.038 0.962 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.118 9.319 1.810 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 H 0.126 0.874 4 C -0.185 4.185 5 C -0.212 4.212 6 H 0.142 0.858 7 C 0.335 3.665 8 O -0.426 6.426 9 N -0.322 5.322 10 C 0.040 3.960 11 C -0.025 4.025 12 C -0.172 4.172 13 C -0.109 4.109 14 C -0.196 4.196 15 C -0.061 4.061 16 N -0.164 5.164 17 C 0.041 3.959 18 C -0.187 4.187 19 C 0.049 3.951 20 N -0.312 5.312 21 C -0.376 4.376 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.549 5.549 25 Si 0.730 3.270 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.218 1.218 29 C 0.024 3.976 30 C -0.192 4.192 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.036 0.964 46 H 0.109 0.891 47 H 0.062 0.938 48 H 0.029 0.971 49 H 0.072 0.928 50 H 0.057 0.943 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.864 8.801 1.468 18.200 hybrid contribution -0.068 -0.242 0.741 0.783 sum -15.931 8.559 2.209 18.219 Atomic orbital electron populations 1.21326 0.91655 1.01147 1.02309 1.22375 0.96413 0.93541 1.01874 0.87407 1.23063 1.02989 1.01515 0.90922 1.22316 1.02091 1.00820 0.95981 0.85850 1.19689 0.87758 0.81012 0.78043 1.90625 1.14489 1.74841 1.62602 1.48202 1.07817 1.26277 1.49951 1.20207 0.96593 0.92563 0.86609 1.21634 0.90216 0.94876 0.95794 1.22067 0.98867 0.98745 0.97477 1.21551 0.98928 0.97469 0.92948 1.22124 0.95996 1.00978 1.00478 1.22811 0.95782 0.94107 0.93373 1.67580 1.29507 1.18838 1.00504 1.21398 0.76736 0.99491 0.98251 1.22582 1.01531 0.95762 0.98799 1.20734 0.86573 1.02073 0.85743 1.44047 1.55281 1.20293 1.11608 1.19228 1.13734 1.12772 0.91873 0.91658 1.25002 0.97242 1.00581 0.96861 1.70037 1.37312 1.37915 1.09638 0.86262 0.78536 0.83592 0.78645 1.20266 1.21624 1.21842 1.20848 0.90823 0.89496 0.96465 1.22740 0.98993 1.02491 0.95005 0.91586 0.93653 0.91796 0.87808 0.88321 0.88312 0.88743 0.84576 0.85247 0.85158 0.82781 0.89853 0.92077 0.93116 0.96420 0.89146 0.93769 0.97130 0.92764 0.94319 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.43 37.16 0.31 -0.92 16 2 C -0.12 -1.38 6.41 -90.58 -0.58 -1.96 16 3 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 4 C -0.15 -1.65 9.88 -26.70 -0.26 -1.91 16 5 C -0.19 -2.46 5.00 -91.77 -0.46 -2.92 16 6 H 0.12 1.58 6.65 -51.93 -0.35 1.23 16 7 C 0.55 8.08 7.44 -10.99 -0.08 8.00 16 8 O -0.55 -8.66 12.64 5.56 0.07 -8.59 16 9 N -0.59 -8.87 2.39 -167.43 -0.40 -9.27 16 10 C 0.16 2.34 5.19 -5.20 -0.03 2.32 16 11 C 0.11 1.61 5.96 -82.59 -0.49 1.12 16 12 C -0.15 -1.91 9.72 -39.44 -0.38 -2.29 16 13 C -0.08 -0.89 10.18 -39.28 -0.40 -1.29 16 14 C -0.18 -1.83 10.11 -39.44 -0.40 -2.23 16 15 C 0.10 1.20 11.18 -17.55 -0.20 1.00 16 16 N -0.46 -6.78 6.88 -9.47 -0.07 -6.85 16 17 C 0.14 2.37 2.39 -67.89 -0.16 2.21 16 18 C -0.15 -2.70 5.31 -26.61 -0.14 -2.84 16 19 C 0.18 4.03 5.31 -3.71 -0.02 4.01 16 20 N -0.59 -14.39 3.00 -172.32 -0.52 -14.91 16 21 C -0.25 -6.66 9.59 -15.06 -0.14 -6.81 16 22 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 23 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 24 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 25 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 C 0.15 3.14 6.51 -3.71 -0.02 3.11 16 30 C -0.15 -2.70 4.24 -26.61 -0.11 -2.82 16 31 H 0.07 0.85 7.26 -51.92 -0.38 0.47 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.81 7.02 -51.93 -0.36 0.45 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 36 H 0.10 1.47 6.46 -51.93 -0.34 1.13 16 37 H 0.09 1.27 7.32 -51.93 -0.38 0.89 16 38 H 0.14 1.68 8.01 -52.49 -0.42 1.25 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.08 1.36 5.43 -51.93 -0.28 1.08 16 43 H 0.06 1.17 6.73 -51.93 -0.35 0.82 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 47 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 49 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 50 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.11 2.01 5.13 -51.93 -0.27 1.75 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -30.24 394.14 -11.08 -41.32 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -8.04 Total: 5.29 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -3.66 Total: -4.28 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.36 Total: -56.20 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.59 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.24 -11.08 -41.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048625262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.472 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds