Wall clock time and date at job start Wed Apr 1 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 115.56080 * 2 1 4 4 C 1.53070 * 117.50927 * 214.29712 * 2 1 3 5 5 C 1.52999 * 59.98524 * 252.52622 * 4 2 1 6 6 H 1.09005 * 117.49873 * 252.50445 * 5 4 2 7 7 C 1.50694 * 117.50169 * 107.50282 * 5 4 2 8 8 O 1.21280 * 120.00181 * 291.25476 * 7 5 4 9 9 N 1.34781 * 120.00153 * 111.25583 * 7 5 4 10 10 C 1.46495 * 120.00109 * 180.02562 * 9 7 5 11 11 C 1.50693 * 109.47336 * 269.99792 * 10 9 7 12 12 C 1.38229 * 119.62020 * 95.00078 * 11 10 9 13 13 C 1.38629 * 119.16399 * 180.02562 * 12 11 10 14 14 C 1.38669 * 118.41835 * 0.24731 * 13 12 11 15 15 C 1.38180 * 119.16633 * 359.52867 * 14 13 12 16 16 N 1.31858 * 119.62114 * 275.02348 * 11 10 9 17 17 C 1.46502 * 119.99636 * 0.02562 * 9 7 5 18 18 C 1.53042 * 109.45890 * 240.06955 * 17 9 7 19 19 C 1.53189 * 109.31337 * 178.61844 * 18 17 9 20 20 N 1.46922 * 108.77827 * 54.63397 * 19 18 17 21 21 C 1.36937 * 120.63276 * 126.41816 * 20 19 18 22 22 H 1.08000 * 119.99762 * 207.65896 * 21 20 19 23 23 C 1.38813 * 120.00136 * 27.65382 * 21 20 19 24 24 N 1.31621 * 119.99648 * 17.38047 * 23 21 20 25 25 Si 1.86795 * 120.00023 * 197.38230 * 23 21 20 26 26 H 1.48502 * 109.47115 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47187 * 119.99978 * 25 23 21 28 28 H 1.48503 * 109.47087 * 240.00215 * 25 23 21 29 29 C 1.46931 * 118.73492 * 306.39174 * 20 19 18 30 30 C 1.53036 * 109.45997 * 120.00394 * 17 9 7 31 31 H 1.09008 * 109.47260 * 274.30996 * 1 2 3 32 32 H 1.09001 * 109.47313 * 34.30740 * 1 2 3 33 33 H 1.08996 * 109.47279 * 154.31218 * 1 2 3 34 34 H 1.09003 * 117.49492 * 145.04236 * 4 2 1 35 35 H 1.08999 * 117.53686 * 359.97438 * 4 2 1 36 36 H 1.09006 * 109.47183 * 150.00061 * 10 9 7 37 37 H 1.08995 * 109.47403 * 30.00025 * 10 9 7 38 38 H 1.08001 * 120.41790 * 359.97438 * 12 11 10 39 39 H 1.07995 * 120.78569 * 179.97438 * 13 12 11 40 40 H 1.08001 * 120.42048 * 179.75282 * 14 13 12 41 41 H 1.08000 * 119.62336 * 180.20595 * 15 14 13 42 42 H 1.08993 * 109.46303 * 0.02671 * 17 9 7 43 43 H 1.09007 * 109.49732 * 298.56863 * 18 17 9 44 44 H 1.08995 * 109.50030 * 58.66331 * 18 17 9 45 45 H 1.09003 * 109.58536 * 294.84654 * 19 18 17 46 46 H 1.09000 * 109.58911 * 174.42190 * 19 18 17 47 47 H 0.97004 * 119.99600 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.58669 * 293.81536 * 29 20 19 49 49 H 1.09003 * 109.69787 * 173.46866 * 29 20 19 50 50 H 1.09005 * 109.49502 * 301.33433 * 30 17 9 51 51 H 1.08998 * 109.49985 * 61.39934 * 30 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2370 -1.1216 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 3.1713 -0.8751 1.2686 7 6 1.3719 -2.1406 1.4608 8 8 0.1637 -2.0523 1.4026 9 7 1.9414 -3.1506 2.1479 10 6 1.1010 -4.1421 2.8239 11 6 0.8141 -3.6824 4.2301 12 6 -0.3532 -2.9924 4.4985 13 6 -0.6073 -2.5736 5.7954 14 6 0.3288 -2.8612 6.7771 15 6 1.4710 -3.5593 6.4347 16 7 1.6797 -3.9427 5.1902 17 6 3.4008 -3.2569 2.2188 18 6 3.8449 -4.5906 1.6135 19 6 5.3733 -4.6832 1.6579 20 7 5.8201 -4.4699 3.0412 21 6 6.6359 -5.3798 3.6591 22 1 6.6093 -5.4865 4.7335 23 6 7.4968 -6.1649 2.9046 24 7 7.7885 -5.8203 1.6683 25 14 8.2413 -7.7103 3.6439 26 1 7.7585 -7.8739 5.0387 27 1 7.8358 -8.8896 2.8377 28 1 9.7219 -7.5957 3.6434 29 6 5.3754 -3.2614 3.7487 30 6 3.8469 -3.1847 3.6809 31 1 -0.3634 0.0772 1.0248 32 1 -0.3634 0.8489 -0.5792 33 1 -0.3633 -0.9261 -0.4454 34 1 3.1723 -0.8757 -1.2679 35 1 1.6126 -1.8599 -1.2680 36 1 1.6212 -5.0995 2.8537 37 1 0.1632 -4.2548 2.2801 38 1 -1.0579 -2.7816 3.7078 39 1 -1.5107 -2.0323 6.0344 40 1 0.1655 -2.5467 7.7974 41 1 2.2034 -3.7902 7.1941 42 1 3.8522 -2.4368 1.6605 43 1 3.4138 -5.4116 2.1865 44 1 3.5066 -4.6513 0.5792 45 1 5.8047 -3.9180 1.0125 46 1 5.6896 -5.6701 1.3199 47 1 8.3904 -6.3688 1.1411 48 1 5.8069 -2.3803 3.2738 49 1 5.6932 -3.3076 4.7903 50 1 3.5100 -2.2447 4.1180 51 1 3.4154 -4.0186 4.2345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048625262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:05 Heat of formation + Delta-G solvation = 47.028349 kcal Electronic energy + Delta-G solvation = -31699.101286 eV Core-core repulsion = 27792.749859 eV Total energy + Delta-G solvation = -3906.351426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.82375 -40.75632 -39.29661 -37.67779 -36.49100 -34.24852 -33.44875 -32.85355 -31.66753 -31.08155 -29.66808 -28.20173 -26.91180 -24.84817 -24.42697 -23.78903 -23.77475 -22.82840 -21.81336 -20.86600 -19.58956 -18.75976 -18.25496 -17.85169 -17.07450 -17.02216 -16.65097 -16.59378 -16.19063 -15.62157 -15.51741 -15.34460 -15.04222 -14.73096 -14.56851 -14.29429 -14.18940 -14.07772 -14.00561 -13.82191 -13.55845 -13.17700 -13.16503 -13.02279 -12.90391 -12.67042 -12.59283 -12.35888 -12.35025 -12.01743 -11.95661 -11.79692 -11.44103 -11.38798 -11.16535 -10.90835 -10.76742 -10.54695 -10.51723 -10.17894 -9.91328 -9.61221 -8.64920 -7.84570 -5.27620 0.13719 0.39848 1.47153 1.49622 1.50010 1.59833 1.97132 2.53936 2.83790 2.96710 3.30167 3.33182 3.47672 3.68510 3.74397 3.81665 3.89178 3.93752 4.03717 4.12629 4.14902 4.20135 4.26900 4.34430 4.47374 4.49447 4.52606 4.57356 4.69385 4.79537 4.81669 4.84918 4.89044 4.90311 4.93432 5.00001 5.06415 5.07612 5.13512 5.18205 5.20718 5.25033 5.29086 5.44053 5.51238 5.58274 5.62785 5.70309 5.77552 5.91204 6.41318 6.43992 7.10701 7.17140 7.18915 7.89821 8.41125 9.22198 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010017 B = 0.004119 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.575314 B = 6796.534770 C = 8940.920666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.114 4.114 3 H 0.130 0.870 4 C -0.140 4.140 5 C -0.211 4.211 6 H 0.125 0.875 7 C 0.543 3.457 8 O -0.558 6.558 9 N -0.591 5.591 10 C 0.165 3.835 11 C 0.095 3.905 12 C -0.159 4.159 13 C -0.081 4.081 14 C -0.164 4.164 15 C 0.080 3.920 16 N -0.488 5.488 17 C 0.156 3.844 18 C -0.130 4.130 19 C 0.184 3.816 20 N -0.605 5.605 21 C -0.256 4.256 22 H 0.063 0.937 23 C -0.047 4.047 24 N -0.933 5.933 25 Si 0.961 3.039 26 H -0.269 1.269 27 H -0.291 1.291 28 H -0.293 1.293 29 C 0.150 3.850 30 C -0.132 4.132 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.135 0.865 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.003 0.997 46 H 0.056 0.944 47 H 0.249 0.751 48 H 0.012 0.988 49 H 0.050 0.950 50 H 0.046 0.954 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.519 10.713 2.677 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.132 4.132 3 H 0.148 0.852 4 C -0.177 4.177 5 C -0.232 4.232 6 H 0.143 0.857 7 C 0.333 3.667 8 O -0.438 6.438 9 N -0.321 5.321 10 C 0.041 3.959 11 C -0.043 4.043 12 C -0.179 4.179 13 C -0.107 4.107 14 C -0.184 4.184 15 C -0.077 4.077 16 N -0.197 5.197 17 C 0.053 3.947 18 C -0.170 4.170 19 C 0.058 3.942 20 N -0.329 5.329 21 C -0.387 4.387 22 H 0.080 0.920 23 C -0.242 4.242 24 N -0.579 5.579 25 Si 0.789 3.211 26 H -0.194 1.194 27 H -0.218 1.218 28 H -0.220 1.220 29 C 0.024 3.976 30 C -0.172 4.172 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.182 0.818 41 H 0.185 0.815 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.021 0.979 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.030 0.970 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.296 10.210 2.347 20.221 hybrid contribution 0.304 -0.624 0.531 0.874 sum -16.992 9.585 2.878 19.720 Atomic orbital electron populations 1.21260 0.92021 1.01250 1.01496 1.22516 0.96118 0.94161 1.00446 0.85210 1.23144 1.03649 1.01291 0.89618 1.22353 1.02288 1.01571 0.96963 0.85724 1.20040 0.87884 0.81035 0.77707 1.90621 1.15074 1.75126 1.62939 1.48092 1.06919 1.26744 1.50340 1.20196 0.96388 0.91898 0.87378 1.21541 0.91129 0.96226 0.95403 1.22127 0.98320 0.98861 0.98592 1.21932 0.99944 0.96761 0.92017 1.22461 0.94654 0.99232 1.02006 1.23175 0.97101 0.94521 0.92896 1.67479 1.30536 1.20072 1.01654 1.21099 0.77920 0.98374 0.97264 1.22320 0.98056 0.96804 0.99830 1.20510 0.89268 0.99563 0.84901 1.44262 1.55296 1.21239 1.12091 1.19489 1.13778 1.13408 0.92004 0.91954 1.25674 0.98076 1.03112 0.97350 1.70171 1.38128 1.38837 1.10764 0.85305 0.77428 0.80117 0.78201 1.19369 1.21762 1.21965 1.20944 0.92813 0.88115 0.95764 1.22482 0.96349 1.02553 0.95825 0.93128 0.91521 0.93373 0.86140 0.88839 0.89530 0.88297 0.84715 0.82231 0.81796 0.81535 0.89166 0.92928 0.91622 0.97868 0.92529 0.94162 0.96997 0.93179 0.93515 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 8.43 71.98 0.61 -1.60 16 2 C -0.11 -2.28 6.41 -10.77 -0.07 -2.35 16 3 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.14 -2.86 9.88 30.62 0.30 -2.55 16 5 C -0.21 -5.11 5.00 -11.54 -0.06 -5.17 16 6 H 0.12 2.99 6.65 -2.38 -0.02 2.97 16 7 C 0.54 15.62 7.44 87.65 0.65 16.28 16 8 O -0.56 -17.30 12.64 -3.03 -0.04 -17.34 16 9 N -0.59 -17.44 2.39 -802.03 -1.91 -19.36 16 10 C 0.16 4.73 5.19 85.63 0.44 5.18 16 11 C 0.10 2.66 5.96 42.55 0.25 2.91 16 12 C -0.16 -3.81 9.72 22.36 0.22 -3.59 16 13 C -0.08 -1.51 10.18 22.47 0.23 -1.29 16 14 C -0.16 -2.95 10.11 22.36 0.23 -2.72 16 15 C 0.08 1.87 11.18 84.67 0.95 2.82 16 16 N -0.49 -14.31 6.88 -183.89 -1.27 -15.57 16 17 C 0.16 5.11 2.39 45.02 0.11 5.21 16 18 C -0.13 -4.84 5.31 30.67 0.16 -4.68 16 19 C 0.18 8.67 5.31 86.36 0.46 9.13 16 20 N -0.61 -30.11 3.00 -699.11 -2.09 -32.20 16 21 C -0.26 -14.10 9.59 84.03 0.81 -13.29 16 22 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 23 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 24 N -0.93 -54.49 11.19 21.65 0.24 -54.25 16 25 Si 0.96 44.93 29.59 68.60 2.03 46.96 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 28 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 29 C 0.15 6.25 6.51 86.36 0.56 6.82 16 30 C -0.13 -4.65 4.24 30.67 0.13 -4.52 16 31 H 0.05 1.24 7.26 -2.38 -0.02 1.22 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.17 7.02 -2.39 -0.02 1.15 16 34 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 2.02 8.05 -2.39 -0.02 2.00 16 36 H 0.09 2.65 6.46 -2.38 -0.02 2.63 16 37 H 0.10 2.68 7.32 -2.39 -0.02 2.66 16 38 H 0.13 3.20 8.01 -2.91 -0.02 3.18 16 39 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 42 H 0.09 2.87 5.43 -2.39 -0.01 2.85 16 43 H 0.05 2.05 6.73 -2.38 -0.02 2.03 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.06 3.05 6.04 -2.39 -0.01 3.04 16 47 H 0.25 14.11 8.31 -92.71 -0.77 13.33 16 48 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.05 2.10 7.94 -2.39 -0.02 2.08 16 50 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 51 H 0.10 3.75 5.13 -2.39 -0.01 3.74 16 Total: -1.00 -66.00 394.14 4.28 -61.72 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.92 Total: 25.64 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 6.39 Total: 4.39 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -5.03 Total: -121.38 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.04 Total: -17.34 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -66.00 4.28 -61.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048625262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.753 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds