Wall clock time and date at job start Wed Apr 1 2020 03:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 115.56377 * 2 1 4 4 C 1.53080 * 117.51196 * 145.70338 * 2 1 3 5 5 C 1.52992 * 59.98370 * 107.47285 * 4 2 1 6 6 H 1.09002 * 117.50138 * 107.50042 * 5 4 2 7 7 C 1.50699 * 117.49998 * 252.49844 * 5 4 2 8 8 O 1.21275 * 120.00289 * 68.74528 * 7 5 4 9 9 N 1.34782 * 119.99834 * 248.74972 * 7 5 4 10 10 C 1.46506 * 119.99588 * 180.02562 * 9 7 5 11 11 C 1.50706 * 109.46895 * 269.99452 * 10 9 7 12 12 C 1.38224 * 119.61405 * 94.73271 * 11 10 9 13 13 C 1.38635 * 119.15927 * 179.71200 * 12 11 10 14 14 C 1.38670 * 118.41620 * 0.54977 * 13 12 11 15 15 C 1.38183 * 119.16802 * 359.73363 * 14 13 12 16 16 N 1.31856 * 119.62039 * 275.00291 * 11 10 9 17 17 C 1.46493 * 120.00058 * 359.97438 * 9 7 5 18 18 C 1.53045 * 109.45995 * 120.00305 * 17 9 7 19 19 C 1.53187 * 109.31402 * 181.38960 * 18 17 9 20 20 N 1.46926 * 108.77188 * 305.36039 * 19 18 17 21 21 C 1.36939 * 120.62804 * 233.58509 * 20 19 18 22 22 H 1.08000 * 119.99985 * 29.49498 * 21 20 19 23 23 C 1.38810 * 119.99816 * 209.48626 * 21 20 19 24 24 N 1.31624 * 120.00096 * 198.98337 * 23 21 20 25 25 Si 1.86801 * 120.00168 * 19.25726 * 23 21 20 26 26 H 1.48502 * 109.47116 * 272.75599 * 25 23 21 27 27 H 1.48505 * 109.46945 * 32.75498 * 25 23 21 28 28 H 1.48503 * 109.47144 * 152.75200 * 25 23 21 29 29 C 1.46922 * 118.74031 * 53.86397 * 20 19 18 30 30 C 1.53035 * 109.46399 * 240.06838 * 17 9 7 31 31 H 1.08997 * 109.47513 * 205.69612 * 1 2 3 32 32 H 1.09009 * 109.46562 * 325.68997 * 1 2 3 33 33 H 1.08997 * 109.47464 * 85.68633 * 1 2 3 34 34 H 1.09003 * 117.51430 * 359.97438 * 4 2 1 35 35 H 1.08996 * 117.49305 * 214.96040 * 4 2 1 36 36 H 1.08996 * 109.47394 * 29.99914 * 10 9 7 37 37 H 1.09006 * 109.46491 * 150.00278 * 10 9 7 38 38 H 1.07996 * 120.42412 * 359.97438 * 12 11 10 39 39 H 1.07993 * 120.78831 * 180.30564 * 13 12 11 40 40 H 1.08007 * 120.41632 * 179.75818 * 14 13 12 41 41 H 1.07997 * 119.61888 * 180.02562 * 15 14 13 42 42 H 1.08997 * 109.46024 * 0.03299 * 17 9 7 43 43 H 1.08999 * 109.50068 * 61.42944 * 18 17 9 44 44 H 1.09009 * 109.52401 * 301.35561 * 18 17 9 45 45 H 1.09010 * 109.58396 * 185.58024 * 19 18 17 46 46 H 1.08994 * 109.70816 * 65.22233 * 19 18 17 47 47 H 0.96998 * 120.00002 * 180.02562 * 24 23 21 48 48 H 1.09003 * 109.58469 * 65.92333 * 29 20 19 49 49 H 1.08994 * 109.58961 * 186.35069 * 29 20 19 50 50 H 1.09005 * 109.49788 * 298.56842 * 30 17 9 51 51 H 1.09002 * 109.49891 * 58.63216 * 30 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 0.7650 5 6 2.2364 -1.1211 -0.7649 6 1 3.1712 -0.8752 -1.2686 7 6 1.3719 -2.1407 -1.4607 8 8 0.1637 -2.0524 -1.4024 9 7 1.9414 -3.1507 -2.1478 10 6 1.1009 -4.1416 -2.8246 11 6 0.8104 -5.2814 -1.8825 12 6 -0.3557 -5.2740 -1.1404 13 6 -0.6163 -6.3303 -0.2812 14 6 0.3155 -7.3534 -0.1916 15 6 1.4620 -7.2894 -0.9603 16 7 1.6741 -6.2716 -1.7717 17 6 3.4007 -3.2571 -2.2186 18 6 3.8446 -4.5915 -1.6149 19 6 5.3730 -4.6842 -1.6591 20 7 5.8199 -4.4693 -3.0421 21 6 6.6357 -5.3786 -3.6610 22 1 6.5869 -6.4221 -3.3870 23 6 7.5252 -4.9590 -4.6406 24 7 8.0305 -5.8306 -5.4876 25 14 8.0111 -3.1588 -4.7519 26 1 7.0310 -2.4330 -5.5992 27 1 8.0245 -2.5646 -3.3910 28 1 9.3641 -3.0475 -5.3539 29 6 5.3800 -3.2572 -3.7464 30 6 3.8470 -3.1832 -3.6806 31 1 -0.3634 -0.9260 0.4456 32 1 -0.3633 0.8489 0.5793 33 1 -0.3634 0.0773 -1.0247 34 1 1.6123 -1.8593 1.2687 35 1 3.1723 -0.8757 1.2679 36 1 0.1644 -3.6754 -3.1306 37 1 1.6224 -4.5206 -3.7036 38 1 -1.0570 -4.4579 -1.2320 39 1 -1.5215 -6.3538 0.3073 40 1 0.1471 -8.1900 0.4705 41 1 2.1923 -8.0824 -0.8966 42 1 3.8521 -2.4376 -1.6595 43 1 3.4135 -5.4119 -2.1888 44 1 3.5061 -4.6540 -0.5806 45 1 5.6891 -5.6716 -1.3223 46 1 5.8064 -3.9215 -1.0123 47 1 8.6524 -5.5375 -6.1719 48 1 5.8119 -2.3789 -3.2668 49 1 5.7007 -3.3026 -4.7871 50 1 3.4159 -4.0168 -4.2351 51 1 3.5098 -2.2429 -4.1168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048625264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:14 Heat of formation + Delta-G solvation = 67.010481 kcal Electronic energy + Delta-G solvation = -31841.841042 eV Core-core repulsion = 27936.356106 eV Total energy + Delta-G solvation = -3905.484936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.80800 -39.82717 -38.08463 -36.69843 -35.21941 -32.69012 -32.47409 -31.69565 -30.32527 -30.01053 -28.80923 -27.22579 -25.07635 -23.83124 -23.52194 -22.79686 -22.22514 -21.76237 -20.96255 -19.60246 -18.46947 -17.43669 -17.05771 -16.67791 -16.20377 -15.86291 -15.63531 -15.31534 -14.96169 -14.60050 -14.21955 -14.10635 -13.75497 -13.48711 -13.41039 -13.15836 -13.09401 -13.07492 -12.89426 -12.70028 -12.32207 -12.28517 -11.97760 -11.86889 -11.77094 -11.64912 -11.58989 -10.92581 -10.76208 -10.47515 -10.36156 -10.27477 -10.15135 -10.07865 -9.86728 -9.82516 -9.49294 -9.47215 -9.15761 -8.98413 -8.60536 -8.47605 -6.92849 -5.92360 -3.29768 1.02843 1.26427 2.50592 2.99899 3.31188 3.48380 3.50912 3.69957 3.87639 4.25063 4.45145 4.54005 4.56487 4.68041 4.74413 4.81887 4.94831 5.01502 5.02854 5.10436 5.13289 5.24037 5.33400 5.39785 5.43088 5.52318 5.56400 5.60148 5.69992 5.73383 5.75081 5.78869 5.89701 5.91502 6.00523 6.06753 6.09526 6.13200 6.17432 6.24530 6.34590 6.40477 6.48526 6.61590 6.64002 6.64919 6.69897 6.81283 7.18235 7.52393 8.01139 8.02355 8.23111 8.37120 8.97357 9.74606 10.12929 11.23985 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.004372 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.649285 B = 6402.740013 C = 8362.905241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.149 4.149 5 C -0.193 4.193 6 H 0.125 0.875 7 C 0.546 3.454 8 O -0.543 6.543 9 N -0.592 5.592 10 C 0.163 3.837 11 C 0.113 3.887 12 C -0.152 4.152 13 C -0.083 4.083 14 C -0.175 4.175 15 C 0.098 3.902 16 N -0.455 5.455 17 C 0.143 3.857 18 C -0.152 4.152 19 C 0.153 3.847 20 N -0.604 5.604 21 C -0.255 4.255 22 H 0.085 0.915 23 C 0.023 3.977 24 N -0.910 5.910 25 Si 0.884 3.116 26 H -0.287 1.287 27 H -0.273 1.273 28 H -0.304 1.304 29 C 0.128 3.872 30 C -0.143 4.143 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.156 0.844 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.016 0.984 47 H 0.262 0.738 48 H 0.023 0.977 49 H 0.078 0.922 50 H 0.072 0.928 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.089 5.620 12.138 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.140 4.140 3 H 0.127 0.873 4 C -0.186 4.186 5 C -0.213 4.213 6 H 0.142 0.858 7 C 0.335 3.665 8 O -0.422 6.422 9 N -0.323 5.323 10 C 0.040 3.960 11 C -0.026 4.026 12 C -0.172 4.172 13 C -0.109 4.109 14 C -0.195 4.195 15 C -0.059 4.059 16 N -0.164 5.164 17 C 0.041 3.959 18 C -0.192 4.192 19 C 0.027 3.973 20 N -0.327 5.327 21 C -0.384 4.384 22 H 0.103 0.897 23 C -0.175 4.175 24 N -0.554 5.554 25 Si 0.714 3.286 26 H -0.214 1.214 27 H -0.198 1.198 28 H -0.232 1.232 29 C 0.002 3.998 30 C -0.183 4.183 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.173 0.827 42 H 0.102 0.898 43 H 0.128 0.872 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.072 0.928 48 H 0.041 0.959 49 H 0.096 0.904 50 H 0.090 0.910 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.827 5.632 11.519 21.156 hybrid contribution -0.155 0.850 0.390 0.948 sum -16.982 6.482 11.909 21.731 Atomic orbital electron populations 1.21333 0.91572 1.01133 1.02469 1.22379 0.96478 0.93516 1.01589 0.87300 1.23046 1.02975 1.01680 0.90939 1.22331 1.02190 1.00957 0.95868 0.85758 1.19680 0.87793 0.80983 0.78016 1.90634 1.14446 1.75427 1.61667 1.48145 1.07550 1.25295 1.51321 1.20235 0.96624 0.85772 0.93403 1.21599 0.90326 0.94412 0.96265 1.22058 0.98821 0.99230 0.97085 1.21555 0.98941 0.93386 0.97015 1.22139 0.95956 1.00008 1.01382 1.22827 0.95768 0.95619 0.91727 1.67570 1.29643 1.00960 1.18245 1.21346 0.77252 0.99679 0.97653 1.22723 0.98606 0.98015 0.99873 1.20888 0.91041 0.99345 0.86052 1.44355 1.56061 1.22961 1.09344 1.18922 1.12588 0.89692 1.17185 0.89738 1.25319 0.97457 0.97013 0.97741 1.69821 1.33730 1.34016 1.17786 0.86986 0.76758 0.86972 0.77854 1.21443 1.19840 1.23229 1.21433 0.90935 0.89423 0.98004 1.22500 0.99293 1.01344 0.95140 0.91890 0.93577 0.91397 0.88503 0.87902 0.88604 0.88248 0.84613 0.85242 0.85103 0.82674 0.89755 0.87178 0.93753 0.91790 0.96585 0.92809 0.95919 0.90414 0.90962 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 8.43 37.16 0.31 -0.86 16 2 C -0.12 -1.25 6.41 -90.58 -0.58 -1.83 16 3 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.15 -1.54 9.88 -26.69 -0.26 -1.80 16 5 C -0.19 -2.29 5.00 -91.78 -0.46 -2.75 16 6 H 0.12 1.43 6.65 -51.93 -0.35 1.08 16 7 C 0.55 7.59 7.44 -10.98 -0.08 7.51 16 8 O -0.54 -8.18 12.61 5.56 0.07 -8.11 16 9 N -0.59 -8.32 2.39 -167.42 -0.40 -8.72 16 10 C 0.16 2.22 5.19 -5.19 -0.03 2.19 16 11 C 0.11 1.54 5.96 -82.58 -0.49 1.04 16 12 C -0.15 -1.83 9.72 -39.44 -0.38 -2.22 16 13 C -0.08 -0.85 10.18 -39.28 -0.40 -1.25 16 14 C -0.17 -1.76 10.11 -39.44 -0.40 -2.16 16 15 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 16 N -0.46 -6.59 6.89 -9.47 -0.07 -6.65 16 17 C 0.14 2.19 2.39 -67.89 -0.16 2.03 16 18 C -0.15 -2.54 4.24 -26.61 -0.11 -2.65 16 19 C 0.15 2.98 6.51 -3.71 -0.02 2.96 16 20 N -0.60 -13.96 2.74 -172.06 -0.47 -14.43 16 21 C -0.26 -7.04 10.03 -15.06 -0.15 -7.19 16 22 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 23 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 24 N -0.91 -27.75 13.97 55.49 0.78 -26.97 16 25 Si 0.88 22.11 24.35 -169.99 -4.14 17.97 16 26 H -0.29 -6.85 6.40 56.52 0.36 -6.49 16 27 H -0.27 -6.72 6.93 56.52 0.39 -6.33 16 28 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 29 C 0.13 2.70 4.23 -3.49 -0.01 2.68 16 30 C -0.14 -2.44 5.33 -26.39 -0.14 -2.58 16 31 H 0.06 0.76 7.02 -51.93 -0.36 0.40 16 32 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 33 H 0.07 0.83 7.26 -51.93 -0.38 0.45 16 34 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.23 7.32 -51.93 -0.38 0.85 16 37 H 0.10 1.41 6.46 -51.93 -0.34 1.08 16 38 H 0.14 1.60 7.99 -52.49 -0.42 1.18 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.08 1.24 5.43 -51.93 -0.28 0.96 16 43 H 0.11 2.00 5.14 -51.93 -0.27 1.73 16 44 H 0.04 0.72 8.14 -51.92 -0.42 0.29 16 45 H 0.06 1.27 7.93 -51.92 -0.41 0.86 16 46 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.02 0.47 7.21 -51.93 -0.37 0.10 16 49 H 0.08 1.81 4.51 -51.93 -0.23 1.58 16 50 H 0.07 1.30 6.72 -51.93 -0.35 0.95 16 51 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -31.48 387.92 -10.02 -41.50 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.97 Total: 4.89 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -3.67 Total: -5.31 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.16 Total: -56.78 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.11 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.48 -10.02 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048625264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.509 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds