Wall clock time and date at job start Wed Apr 1 2020 03:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 115.54796 * 2 1 4 4 C 1.53000 * 117.49801 * 145.66244 * 2 1 3 5 5 C 1.52995 * 117.50065 * 214.28603 * 2 1 3 6 6 H 1.09001 * 117.49747 * 0.02562 * 5 2 1 7 7 C 1.50694 * 117.49858 * 145.02127 * 5 2 1 8 8 O 1.21279 * 120.00158 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00184 * 180.02562 * 7 5 2 10 10 C 1.46498 * 119.99845 * 0.02562 * 9 7 5 11 11 C 1.50706 * 109.47236 * 276.06681 * 10 9 7 12 12 C 1.38225 * 119.61485 * 95.72955 * 11 10 9 13 13 C 1.38630 * 119.15931 * 179.71565 * 12 11 10 14 14 C 1.38677 * 118.41570 * 0.54467 * 13 12 11 15 15 C 1.38176 * 119.16897 * 359.73780 * 14 13 12 16 16 N 1.31852 * 119.61935 * 276.00411 * 11 10 9 17 17 C 1.46499 * 120.00311 * 179.97438 * 9 7 5 18 18 C 1.53034 * 109.46499 * 245.46996 * 17 9 7 19 19 C 1.53185 * 109.31757 * 178.60031 * 18 17 9 20 20 N 1.46924 * 108.76432 * 54.65561 * 19 18 17 21 21 C 1.36938 * 120.63399 * 126.41063 * 20 19 18 22 22 H 1.07996 * 120.00286 * 214.62668 * 21 20 19 23 23 C 1.38816 * 119.99847 * 34.62017 * 21 20 19 24 24 N 1.31617 * 120.00024 * 16.93946 * 23 21 20 25 25 Si 1.86807 * 119.99937 * 196.94457 * 23 21 20 26 26 H 1.48498 * 109.47122 * 59.99811 * 25 23 21 27 27 H 1.48499 * 109.47100 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46911 * 299.99898 * 25 23 21 29 29 C 1.46927 * 118.73860 * 306.38499 * 20 19 18 30 30 C 1.53041 * 109.45991 * 125.41318 * 17 9 7 31 31 H 1.08998 * 109.47777 * 325.72835 * 1 2 3 32 32 H 1.08997 * 109.47372 * 205.72412 * 1 2 3 33 33 H 1.09008 * 109.47194 * 85.72957 * 1 2 3 34 34 H 1.08997 * 117.49796 * 214.98228 * 4 2 1 35 35 H 1.09000 * 117.49688 * 0.02562 * 4 2 1 36 36 H 1.08998 * 109.47176 * 36.06832 * 10 9 7 37 37 H 1.09000 * 109.47522 * 156.06687 * 10 9 7 38 38 H 1.08003 * 120.42422 * 359.97438 * 12 11 10 39 39 H 1.07993 * 120.79047 * 180.26044 * 13 12 11 40 40 H 1.08006 * 120.41459 * 179.71078 * 14 13 12 41 41 H 1.07998 * 119.62190 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.45706 * 5.44539 * 17 9 7 43 43 H 1.09007 * 109.49693 * 298.57070 * 18 17 9 44 44 H 1.09004 * 109.49615 * 58.65895 * 18 17 9 45 45 H 1.08997 * 109.59870 * 294.86866 * 19 18 17 46 46 H 1.09001 * 109.59110 * 174.43890 * 19 18 17 47 47 H 0.96998 * 119.99529 * 180.02562 * 24 23 21 48 48 H 1.09002 * 109.58377 * 293.81845 * 29 20 19 49 49 H 1.09000 * 109.58503 * 173.40096 * 29 20 19 50 50 H 1.09004 * 109.49818 * 301.33976 * 30 17 9 51 51 H 1.09005 * 109.49641 * 61.43680 * 30 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2364 -1.1206 0.7655 5 6 2.2365 -1.1213 -0.7645 6 1 1.6112 -1.8587 -1.2678 7 6 3.5292 -0.7817 -1.4604 8 8 3.9715 0.3461 -1.4017 9 7 4.1935 -1.7309 -2.1490 10 6 3.6584 -3.0928 -2.2213 11 6 4.0759 -3.8624 -0.9947 12 6 3.2153 -3.9482 0.0836 13 6 3.6065 -4.6636 1.2048 14 6 4.8590 -5.2589 1.2039 15 6 5.6675 -5.1250 0.0914 16 7 5.2599 -4.4415 -0.9603 17 6 5.4500 -1.4007 -2.8260 18 6 5.2637 -1.5320 -4.3392 19 6 6.5690 -1.1522 -5.0453 20 7 7.6582 -1.9726 -4.4983 21 6 8.4634 -2.7064 -5.3280 22 1 8.8439 -3.6636 -5.0036 23 6 8.7905 -2.2199 -6.5863 24 7 8.6213 -0.9443 -6.8631 25 14 9.4708 -3.3756 -7.8868 26 1 8.4810 -4.4477 -8.1628 27 1 9.7371 -2.6153 -9.1342 28 1 10.7345 -3.9827 -7.3972 29 6 7.8675 -1.9904 -3.0442 30 6 6.5475 -2.3604 -2.3605 31 1 -0.3634 0.8492 0.5787 32 1 -0.3634 -0.9258 0.4460 33 1 -0.3634 0.0765 -1.0249 34 1 3.1714 -0.8746 1.2687 35 1 1.6111 -1.8581 1.2688 36 1 2.5704 -3.0534 -2.2727 37 1 4.0464 -3.5889 -3.1110 38 1 2.2486 -3.4676 0.0514 39 1 2.9533 -4.7512 2.0603 40 1 5.1984 -5.8198 2.0622 41 1 6.6444 -5.5853 0.0830 42 1 5.7354 -0.3773 -2.5826 43 1 5.0025 -2.5612 -4.5857 44 1 4.4658 -0.8654 -4.6667 45 1 6.7842 -0.0976 -4.8735 46 1 6.4733 -1.3381 -6.1151 47 1 8.8496 -0.6045 -7.7425 48 1 8.1886 -1.0041 -2.7092 49 1 8.6286 -2.7293 -2.7935 50 1 6.6636 -2.2835 -1.2794 51 1 6.2742 -3.3817 -2.6258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048625265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:18 Heat of formation + Delta-G solvation = 54.129208 kcal Electronic energy + Delta-G solvation = -31502.039112 eV Core-core repulsion = 27595.995602 eV Total energy + Delta-G solvation = -3906.043510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.81421 -39.70657 -37.91285 -36.51640 -35.32968 -32.72170 -32.58688 -31.46261 -30.04043 -29.58670 -28.85731 -26.86798 -25.43853 -23.82354 -23.65615 -22.43858 -22.02570 -21.67042 -20.79443 -19.11160 -18.73516 -17.43183 -16.96853 -16.60744 -16.35766 -15.86672 -15.84478 -14.85442 -14.70469 -14.53264 -14.29645 -13.92156 -13.62957 -13.50738 -13.38324 -13.32401 -13.13095 -12.92057 -12.80096 -12.56187 -12.35114 -12.24475 -11.97516 -11.87286 -11.59407 -11.30228 -11.08852 -10.75765 -10.67347 -10.52004 -10.27008 -10.25922 -10.14676 -10.08984 -9.94117 -9.75666 -9.60027 -9.37670 -9.27424 -9.13481 -8.46400 -8.29181 -6.49936 -5.72535 -3.20095 0.94327 1.17549 2.56461 3.06726 3.42372 3.47783 3.49270 3.67041 3.75771 4.14883 4.42631 4.51673 4.55373 4.58839 4.60979 4.72013 4.85851 4.89267 4.98458 5.08942 5.23866 5.31840 5.38159 5.43221 5.44279 5.50283 5.53866 5.56268 5.63340 5.66571 5.74139 5.77780 5.81892 5.95685 6.01830 6.03945 6.10941 6.26518 6.36458 6.46127 6.57277 6.64563 6.71667 6.78996 6.94216 7.01588 7.21796 7.37310 7.56834 7.68668 7.88851 7.96154 8.34497 8.56667 9.28962 9.91104 10.53386 11.35657 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.003478 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.597127 B = 8047.575243 C = 9580.707363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.124 4.124 3 H 0.116 0.884 4 C -0.147 4.147 5 C -0.190 4.190 6 H 0.122 0.878 7 C 0.541 3.459 8 O -0.540 6.540 9 N -0.592 5.592 10 C 0.157 3.843 11 C 0.113 3.887 12 C -0.162 4.162 13 C -0.079 4.079 14 C -0.175 4.175 15 C 0.101 3.899 16 N -0.454 5.454 17 C 0.146 3.854 18 C -0.144 4.144 19 C 0.180 3.820 20 N -0.588 5.588 21 C -0.256 4.256 22 H 0.061 0.939 23 C 0.009 3.991 24 N -0.898 5.898 25 Si 0.900 3.100 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.149 3.851 30 C -0.132 4.132 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.155 0.845 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.021 0.979 46 H 0.076 0.924 47 H 0.254 0.746 48 H 0.013 0.987 49 H 0.055 0.945 50 H 0.042 0.958 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.313 -6.539 17.632 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 H 0.135 0.865 4 C -0.184 4.184 5 C -0.211 4.211 6 H 0.139 0.861 7 C 0.329 3.671 8 O -0.417 6.417 9 N -0.322 5.322 10 C 0.033 3.967 11 C -0.026 4.026 12 C -0.182 4.182 13 C -0.106 4.106 14 C -0.195 4.195 15 C -0.057 4.057 16 N -0.163 5.163 17 C 0.045 3.955 18 C -0.185 4.185 19 C 0.053 3.947 20 N -0.311 5.311 21 C -0.386 4.386 22 H 0.079 0.921 23 C -0.191 4.191 24 N -0.541 5.541 25 Si 0.729 3.271 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.022 3.978 30 C -0.172 4.172 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.172 0.828 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.039 0.961 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.031 0.969 49 H 0.073 0.927 50 H 0.061 0.939 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.453 -5.748 16.741 24.166 hybrid contribution -0.133 -0.805 0.092 0.821 sum -16.587 -6.552 16.833 24.524 Atomic orbital electron populations 1.21392 0.92323 1.02031 1.02200 1.22400 0.95057 0.95283 1.01500 0.86549 1.23091 1.02966 1.01424 0.90949 1.22425 0.98140 1.04967 0.95599 0.86064 1.19639 0.84603 0.84654 0.78231 1.90685 1.68626 1.20910 1.61489 1.48140 1.24561 1.08242 1.51279 1.20356 0.98469 0.82285 0.95577 1.21656 0.90131 0.94943 0.95890 1.22080 1.01565 1.00315 0.94256 1.21516 0.96055 0.95118 0.97873 1.22150 0.95518 1.01704 1.00158 1.22841 0.99627 0.94503 0.88696 1.67649 1.14778 1.06513 1.27380 1.21258 0.81590 1.00483 0.92203 1.22558 1.00916 1.00988 0.94002 1.20610 0.83382 0.93189 0.97485 1.43967 1.32892 1.54157 1.00104 1.19051 1.25021 0.98121 0.96416 0.92110 1.25199 0.98838 0.95099 0.99938 1.70041 1.51282 1.11501 1.21294 0.86430 0.79020 0.80369 0.81264 1.20977 1.21712 1.20841 1.20896 0.93605 0.97720 0.85578 1.22428 0.96150 1.00451 0.98159 0.91765 0.92489 0.91914 0.88494 0.88003 0.89365 0.87743 0.84826 0.85154 0.85084 0.82752 0.89126 0.92401 0.93255 0.96098 0.90560 0.93623 0.96919 0.92681 0.93894 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.19 37.16 0.38 -0.48 16 2 C -0.12 -1.20 5.92 -90.62 -0.54 -1.74 16 3 H 0.12 1.38 7.67 -51.93 -0.40 0.98 16 4 C -0.15 -1.30 8.10 -26.73 -0.22 -1.51 16 5 C -0.19 -2.01 3.56 -91.78 -0.33 -2.34 16 6 H 0.12 1.00 6.17 -51.93 -0.32 0.68 16 7 C 0.54 8.34 7.40 -10.99 -0.08 8.25 16 8 O -0.54 -10.53 15.59 5.56 0.09 -10.45 16 9 N -0.59 -9.04 2.37 -167.43 -0.40 -9.44 16 10 C 0.16 1.94 4.76 -5.19 -0.02 1.91 16 11 C 0.11 1.36 6.05 -82.58 -0.50 0.86 16 12 C -0.16 -1.50 8.16 -39.44 -0.32 -1.82 16 13 C -0.08 -0.65 10.18 -39.27 -0.40 -1.05 16 14 C -0.18 -1.52 10.11 -39.44 -0.40 -1.92 16 15 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 16 N -0.45 -6.15 7.29 -9.47 -0.07 -6.22 16 17 C 0.15 2.74 2.45 -67.89 -0.17 2.57 16 18 C -0.14 -2.87 5.41 -26.62 -0.14 -3.01 16 19 C 0.18 4.42 5.28 -3.72 -0.02 4.40 16 20 N -0.59 -15.18 2.95 -172.33 -0.51 -15.68 16 21 C -0.26 -7.17 9.50 -15.06 -0.14 -7.31 16 22 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 23 C 0.01 0.25 4.87 -17.43 -0.08 0.17 16 24 N -0.90 -26.66 11.71 55.49 0.65 -26.01 16 25 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.15 3.35 6.52 -3.71 -0.02 3.32 16 30 C -0.13 -2.51 4.05 -26.61 -0.11 -2.62 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 33 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.10 0.63 7.55 -51.93 -0.39 0.24 16 36 H 0.09 0.81 6.17 -51.93 -0.32 0.49 16 37 H 0.10 1.41 6.54 -51.93 -0.34 1.07 16 38 H 0.13 0.96 5.19 -52.48 -0.27 0.68 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 42 H 0.09 1.95 6.92 -51.93 -0.36 1.59 16 43 H 0.06 1.12 6.97 -51.93 -0.36 0.76 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 2.05 6.58 -51.93 -0.34 1.71 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.05 1.22 7.93 -51.93 -0.41 0.81 16 50 H 0.04 0.80 7.91 -51.93 -0.41 0.39 16 51 H 0.09 1.67 5.84 -51.93 -0.30 1.37 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -33.59 393.07 -10.65 -44.24 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.00 Total: 2.12 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -3.31 Total: -1.40 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.33 Total: -57.35 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.59 -10.65 -44.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048625265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.372 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds