Wall clock time and date at job start Wed Apr 1 2020 03:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 115.54796 * 2 1 4 4 C 1.53000 * 117.49801 * 145.66244 * 2 1 3 5 5 C 1.52995 * 117.50065 * 214.28603 * 2 1 3 6 6 H 1.09001 * 117.49747 * 0.02562 * 5 2 1 7 7 C 1.50694 * 117.49858 * 145.02127 * 5 2 1 8 8 O 1.21279 * 120.00158 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00184 * 180.02562 * 7 5 2 10 10 C 1.46498 * 119.99845 * 0.02562 * 9 7 5 11 11 C 1.50706 * 109.47236 * 276.06681 * 10 9 7 12 12 C 1.38225 * 119.61485 * 95.72955 * 11 10 9 13 13 C 1.38630 * 119.15931 * 179.71565 * 12 11 10 14 14 C 1.38677 * 118.41570 * 0.54467 * 13 12 11 15 15 C 1.38176 * 119.16897 * 359.73780 * 14 13 12 16 16 N 1.31852 * 119.61935 * 276.00411 * 11 10 9 17 17 C 1.46499 * 120.00311 * 179.97438 * 9 7 5 18 18 C 1.53034 * 109.46499 * 245.46996 * 17 9 7 19 19 C 1.53185 * 109.31757 * 178.60031 * 18 17 9 20 20 N 1.46924 * 108.76432 * 54.65561 * 19 18 17 21 21 C 1.36938 * 120.63399 * 126.41063 * 20 19 18 22 22 H 1.07996 * 120.00286 * 214.62668 * 21 20 19 23 23 C 1.38816 * 119.99847 * 34.62017 * 21 20 19 24 24 N 1.31617 * 120.00024 * 16.93946 * 23 21 20 25 25 Si 1.86807 * 119.99937 * 196.94457 * 23 21 20 26 26 H 1.48498 * 109.47122 * 59.99811 * 25 23 21 27 27 H 1.48499 * 109.47100 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46911 * 299.99898 * 25 23 21 29 29 C 1.46927 * 118.73860 * 306.38499 * 20 19 18 30 30 C 1.53041 * 109.45991 * 125.41318 * 17 9 7 31 31 H 1.08998 * 109.47777 * 325.72835 * 1 2 3 32 32 H 1.08997 * 109.47372 * 205.72412 * 1 2 3 33 33 H 1.09008 * 109.47194 * 85.72957 * 1 2 3 34 34 H 1.08997 * 117.49796 * 214.98228 * 4 2 1 35 35 H 1.09000 * 117.49688 * 0.02562 * 4 2 1 36 36 H 1.08998 * 109.47176 * 36.06832 * 10 9 7 37 37 H 1.09000 * 109.47522 * 156.06687 * 10 9 7 38 38 H 1.08003 * 120.42422 * 359.97438 * 12 11 10 39 39 H 1.07993 * 120.79047 * 180.26044 * 13 12 11 40 40 H 1.08006 * 120.41459 * 179.71078 * 14 13 12 41 41 H 1.07998 * 119.62190 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.45706 * 5.44539 * 17 9 7 43 43 H 1.09007 * 109.49693 * 298.57070 * 18 17 9 44 44 H 1.09004 * 109.49615 * 58.65895 * 18 17 9 45 45 H 1.08997 * 109.59870 * 294.86866 * 19 18 17 46 46 H 1.09001 * 109.59110 * 174.43890 * 19 18 17 47 47 H 0.96998 * 119.99529 * 180.02562 * 24 23 21 48 48 H 1.09002 * 109.58377 * 293.81845 * 29 20 19 49 49 H 1.09000 * 109.58503 * 173.40096 * 29 20 19 50 50 H 1.09004 * 109.49818 * 301.33976 * 30 17 9 51 51 H 1.09005 * 109.49641 * 61.43680 * 30 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2364 -1.1206 0.7655 5 6 2.2365 -1.1213 -0.7645 6 1 1.6112 -1.8587 -1.2678 7 6 3.5292 -0.7817 -1.4604 8 8 3.9715 0.3461 -1.4017 9 7 4.1935 -1.7309 -2.1490 10 6 3.6584 -3.0928 -2.2213 11 6 4.0759 -3.8624 -0.9947 12 6 3.2153 -3.9482 0.0836 13 6 3.6065 -4.6636 1.2048 14 6 4.8590 -5.2589 1.2039 15 6 5.6675 -5.1250 0.0914 16 7 5.2599 -4.4415 -0.9603 17 6 5.4500 -1.4007 -2.8260 18 6 5.2637 -1.5320 -4.3392 19 6 6.5690 -1.1522 -5.0453 20 7 7.6582 -1.9726 -4.4983 21 6 8.4634 -2.7064 -5.3280 22 1 8.8439 -3.6636 -5.0036 23 6 8.7905 -2.2199 -6.5863 24 7 8.6213 -0.9443 -6.8631 25 14 9.4708 -3.3756 -7.8868 26 1 8.4810 -4.4477 -8.1628 27 1 9.7371 -2.6153 -9.1342 28 1 10.7345 -3.9827 -7.3972 29 6 7.8675 -1.9904 -3.0442 30 6 6.5475 -2.3604 -2.3605 31 1 -0.3634 0.8492 0.5787 32 1 -0.3634 -0.9258 0.4460 33 1 -0.3634 0.0765 -1.0249 34 1 3.1714 -0.8746 1.2687 35 1 1.6111 -1.8581 1.2688 36 1 2.5704 -3.0534 -2.2727 37 1 4.0464 -3.5889 -3.1110 38 1 2.2486 -3.4676 0.0514 39 1 2.9533 -4.7512 2.0603 40 1 5.1984 -5.8198 2.0622 41 1 6.6444 -5.5853 0.0830 42 1 5.7354 -0.3773 -2.5826 43 1 5.0025 -2.5612 -4.5857 44 1 4.4658 -0.8654 -4.6667 45 1 6.7842 -0.0976 -4.8735 46 1 6.4733 -1.3381 -6.1151 47 1 8.8496 -0.6045 -7.7425 48 1 8.1886 -1.0041 -2.7092 49 1 8.6286 -2.7293 -2.7935 50 1 6.6636 -2.2835 -1.2794 51 1 6.2742 -3.3817 -2.6258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048625265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:16 Heat of formation + Delta-G solvation = 35.129920 kcal Electronic energy + Delta-G solvation = -31502.862983 eV Core-core repulsion = 27595.995602 eV Total energy + Delta-G solvation = -3906.867381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.83843 -40.62025 -39.34510 -37.68925 -36.74501 -34.48618 -33.32623 -32.69867 -31.72237 -31.34004 -29.56477 -27.88300 -27.12410 -25.21212 -24.39398 -23.85444 -23.39355 -23.02896 -21.65823 -20.67908 -19.93634 -18.81312 -18.30387 -17.80281 -17.42137 -16.92401 -16.75577 -16.62316 -15.86531 -15.73872 -15.46022 -15.38346 -15.05814 -14.82018 -14.57274 -14.28719 -14.17080 -14.09090 -14.04051 -13.90568 -13.61039 -13.21070 -13.08589 -13.05110 -12.81944 -12.66062 -12.59252 -12.51092 -12.27439 -12.13803 -12.03735 -11.87854 -11.54070 -11.35734 -11.25397 -10.97081 -10.75629 -10.66153 -10.56997 -10.21052 -9.90268 -9.64816 -8.64012 -7.89233 -5.42046 0.21218 0.50155 1.45489 1.46393 1.49108 1.56406 1.92742 2.50373 2.86510 2.98277 3.25734 3.35822 3.52464 3.64498 3.75478 3.81536 3.87947 3.92416 4.08245 4.10345 4.14898 4.21148 4.31863 4.34600 4.44778 4.46358 4.49182 4.57381 4.64513 4.72534 4.77462 4.80935 4.83941 4.87497 4.95099 4.99413 4.99699 5.06883 5.11077 5.12887 5.27051 5.29639 5.31493 5.36678 5.45588 5.46839 5.56350 5.63622 5.65554 5.91004 6.40055 6.41112 7.12742 7.14284 7.20712 7.80032 8.39070 9.17134 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.003478 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.597127 B = 8047.575243 C = 9580.707363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.129 4.129 3 H 0.083 0.917 4 C -0.127 4.127 5 C -0.193 4.193 6 H 0.156 0.844 7 C 0.533 3.467 8 O -0.594 6.594 9 N -0.589 5.589 10 C 0.155 3.845 11 C 0.088 3.912 12 C -0.154 4.154 13 C -0.077 4.077 14 C -0.168 4.168 15 C 0.076 3.924 16 N -0.497 5.497 17 C 0.156 3.844 18 C -0.125 4.125 19 C 0.189 3.811 20 N -0.603 5.603 21 C -0.270 4.270 22 H 0.064 0.936 23 C -0.043 4.043 24 N -0.934 5.934 25 Si 0.970 3.030 26 H -0.274 1.274 27 H -0.294 1.294 28 H -0.274 1.274 29 C 0.146 3.854 30 C -0.103 4.103 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.058 0.942 45 H -0.011 1.011 46 H 0.049 0.951 47 H 0.251 0.749 48 H -0.004 1.004 49 H 0.056 0.944 50 H 0.046 0.954 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.419 -9.311 19.898 29.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.148 4.148 3 H 0.101 0.899 4 C -0.164 4.164 5 C -0.214 4.214 6 H 0.173 0.827 7 C 0.323 3.677 8 O -0.475 6.475 9 N -0.319 5.319 10 C 0.032 3.968 11 C -0.051 4.051 12 C -0.174 4.174 13 C -0.103 4.103 14 C -0.188 4.188 15 C -0.081 4.081 16 N -0.207 5.207 17 C 0.053 3.947 18 C -0.165 4.165 19 C 0.062 3.938 20 N -0.327 5.327 21 C -0.400 4.400 22 H 0.081 0.919 23 C -0.239 4.239 24 N -0.578 5.578 25 Si 0.797 3.203 26 H -0.200 1.200 27 H -0.220 1.220 28 H -0.199 1.199 29 C 0.020 3.980 30 C -0.143 4.143 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.162 0.838 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.176 0.824 41 H 0.175 0.825 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.007 0.993 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.014 0.986 49 H 0.074 0.926 50 H 0.064 0.936 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.585 -8.564 19.039 28.625 hybrid contribution 0.888 0.087 -0.512 1.029 sum -18.697 -8.477 18.526 27.653 Atomic orbital electron populations 1.21390 0.89727 1.03616 1.02569 1.22432 0.96856 0.93883 1.01622 0.89879 1.23216 1.02437 1.01463 0.89298 1.22439 0.95756 1.06559 0.96642 0.82694 1.20570 0.85849 0.83659 0.77585 1.90664 1.70300 1.23168 1.63322 1.48046 1.23104 1.09992 1.50750 1.20607 1.00449 0.80085 0.95653 1.21617 0.90696 0.96059 0.96694 1.22329 1.01930 0.99728 0.93403 1.21984 0.96073 0.93692 0.98508 1.22468 0.95453 1.00982 0.99895 1.23061 1.00561 0.95171 0.89347 1.67490 1.16168 1.07978 1.29073 1.20773 0.83730 0.98523 0.91691 1.22274 0.98299 1.01524 0.94444 1.20379 0.85521 0.91387 0.96481 1.44193 1.33250 1.54039 1.01176 1.19389 1.25118 0.98414 0.97105 0.91875 1.26020 0.99475 0.96506 1.01937 1.70207 1.52709 1.13395 1.21508 0.85320 0.78618 0.78266 0.78080 1.19970 1.21969 1.19940 1.20994 0.95774 0.96896 0.84333 1.22094 0.94164 1.00414 0.97624 0.91364 0.89915 0.91987 0.90550 0.83778 0.85499 0.89404 0.82142 0.81436 0.82416 0.82474 0.92547 0.91372 0.92315 0.99285 0.93245 0.93989 0.98588 0.92551 0.93558 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.19 71.98 0.73 -0.47 16 2 C -0.13 -2.22 5.92 -10.80 -0.06 -2.29 16 3 H 0.08 2.01 7.67 -2.39 -0.02 1.99 16 4 C -0.13 -1.77 8.10 30.59 0.25 -1.52 16 5 C -0.19 -3.53 3.56 -11.54 -0.04 -3.57 16 6 H 0.16 1.76 6.17 -2.39 -0.01 1.75 16 7 C 0.53 16.27 7.40 87.65 0.65 16.92 16 8 O -0.59 -24.22 15.59 -3.03 -0.05 -24.27 16 9 N -0.59 -17.86 2.37 -802.01 -1.90 -19.76 16 10 C 0.15 3.53 4.76 85.64 0.41 3.93 16 11 C 0.09 1.91 6.05 42.55 0.26 2.17 16 12 C -0.15 -2.18 8.16 22.36 0.18 -2.00 16 13 C -0.08 -0.88 10.18 22.47 0.23 -0.65 16 14 C -0.17 -2.36 10.11 22.36 0.23 -2.13 16 15 C 0.08 1.57 11.18 84.67 0.95 2.51 16 16 N -0.50 -13.01 7.29 -183.89 -1.34 -14.35 16 17 C 0.16 6.10 2.45 45.02 0.11 6.21 16 18 C -0.13 -5.16 5.41 30.67 0.17 -5.00 16 19 C 0.19 9.83 5.28 86.36 0.46 10.29 16 20 N -0.60 -32.54 2.95 -699.11 -2.06 -34.60 16 21 C -0.27 -15.54 9.50 84.03 0.80 -14.74 16 22 H 0.06 3.54 7.88 -2.91 -0.02 3.52 16 23 C -0.04 -2.49 4.87 84.86 0.41 -2.07 16 24 N -0.93 -57.63 11.71 21.65 0.25 -57.37 16 25 Si 0.97 45.90 29.59 68.60 2.03 47.93 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 28 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 29 C 0.15 6.90 6.52 86.36 0.56 7.46 16 30 C -0.10 -4.06 4.05 30.67 0.12 -3.93 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.46 7.90 -2.39 -0.02 0.44 16 33 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.14 0.83 7.55 -2.39 -0.02 0.81 16 36 H 0.13 1.83 6.17 -2.39 -0.01 1.81 16 37 H 0.09 2.29 6.54 -2.39 -0.02 2.28 16 38 H 0.16 1.29 5.19 -2.91 -0.02 1.28 16 39 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 42 H 0.06 2.61 6.92 -2.39 -0.02 2.59 16 43 H 0.07 2.68 6.97 -2.38 -0.02 2.66 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 46 H 0.05 2.81 6.58 -2.39 -0.02 2.79 16 47 H 0.25 14.96 8.31 -92.71 -0.77 14.18 16 48 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 50 H 0.05 1.78 7.91 -2.39 -0.02 1.76 16 51 H 0.09 3.55 5.84 -2.38 -0.01 3.54 16 Total: -1.00 -79.47 393.07 4.26 -75.21 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.92 Total: 16.11 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.40 Total: 11.11 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.05 Total: -126.09 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -79.47 4.26 -75.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048625265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.337 kcal (2) G-P(sol) polarization free energy of solvation -79.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds