Wall clock time and date at job start Wed Apr 1 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58799 * 2 1 4 4 C 1.53164 * 109.58710 * 239.56747 * 2 1 3 5 5 C 1.53049 * 109.32687 * 185.56974 * 4 2 1 6 6 C 1.53041 * 109.52250 * 61.37079 * 5 4 2 7 7 H 1.09006 * 109.49082 * 178.69048 * 6 5 4 8 8 N 1.46496 * 109.49854 * 58.63124 * 6 5 4 9 9 C 1.34776 * 120.00382 * 154.99628 * 8 6 5 10 10 O 1.21554 * 120.00011 * 359.97438 * 9 8 6 11 11 C 1.47861 * 120.00101 * 179.97438 * 9 8 6 12 12 C 1.39607 * 120.02713 * 359.71853 * 11 9 8 13 13 C 1.37996 * 119.74391 * 179.87079 * 12 11 9 14 14 C 1.38092 * 120.28057 * 0.53731 * 13 12 11 15 15 C 1.39083 * 120.70887 * 359.51072 * 14 13 12 16 16 C 1.39155 * 119.24450 * 0.30761 * 15 14 13 17 17 N 1.40106 * 110.93634 * 180.68676 * 15 14 13 18 18 C 1.46898 * 111.00201 * 219.73077 * 17 15 14 19 19 C 1.47901 * 107.86999 * 341.53901 * 17 15 14 20 20 C 1.51625 * 131.37794 * 179.36239 * 14 13 12 21 21 C 1.53191 * 109.31761 * 298.64048 * 6 5 4 22 22 N 1.46924 * 109.58887 * 120.28490 * 2 1 3 23 23 C 1.36943 * 120.63047 * 353.37615 * 22 2 1 24 24 H 1.07994 * 119.99694 * 29.03344 * 23 22 2 25 25 C 1.38804 * 119.99860 * 209.04061 * 23 22 2 26 26 N 1.31617 * 120.00554 * 15.00542 * 25 23 22 27 27 Si 1.86804 * 119.99695 * 195.01258 * 25 23 22 28 28 H 1.48494 * 109.47415 * 59.99802 * 27 25 23 29 29 H 1.48506 * 109.47200 * 179.97438 * 27 25 23 30 30 H 1.48504 * 109.46821 * 299.99362 * 27 25 23 31 31 H 1.09004 * 109.47092 * 299.71657 * 1 2 3 32 32 H 1.09005 * 109.47173 * 59.71579 * 1 2 3 33 33 H 1.09001 * 109.47141 * 179.71731 * 1 2 3 34 34 H 1.08996 * 109.48091 * 65.62734 * 4 2 1 35 35 H 1.08996 * 109.50689 * 305.53268 * 4 2 1 36 36 H 1.09006 * 109.46012 * 301.36224 * 5 4 2 37 37 H 1.08993 * 109.46166 * 181.38763 * 5 4 2 38 38 H 0.97009 * 119.99871 * 334.99361 * 8 6 5 39 39 H 1.07999 * 120.12679 * 0.13447 * 12 11 9 40 40 H 1.08000 * 119.86037 * 180.26040 * 13 12 11 41 41 H 1.08001 * 119.96956 * 179.79526 * 16 15 14 42 42 H 1.08998 * 109.46896 * 60.00196 * 18 17 15 43 43 H 1.09008 * 109.47118 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.47108 * 299.99541 * 18 17 15 45 45 H 1.09000 * 110.77904 * 269.07640 * 19 17 15 46 46 H 1.09008 * 110.77557 * 145.64918 * 19 17 15 47 47 H 1.08993 * 110.74276 * 314.45011 * 20 14 13 48 48 H 1.09000 * 110.73593 * 77.76847 * 20 14 13 49 49 H 1.08993 * 109.58865 * 174.42189 * 21 6 5 50 50 H 1.08998 * 109.58512 * 294.85100 * 21 6 5 51 51 H 0.96998 * 120.00355 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7309 -1.2442 5 6 3.5675 -0.8494 -1.1692 6 6 3.9568 -1.6656 0.0655 7 1 5.0412 -1.7694 0.1057 8 7 3.3412 -2.9927 -0.0116 9 6 3.8979 -4.0328 0.6400 10 8 4.9113 -3.8699 1.2913 11 6 3.2762 -5.3721 0.5627 12 6 2.1091 -5.5587 -0.1803 13 6 1.5352 -6.8117 -0.2507 14 6 2.1043 -7.8768 0.4190 15 6 3.2662 -7.7080 1.1646 16 6 3.8511 -6.4474 1.2359 17 7 3.6710 -8.9188 1.7418 18 6 4.1682 -8.7103 3.1083 19 6 2.5104 -9.8355 1.7342 20 6 1.6887 -9.3310 0.5260 21 6 3.4651 -0.9454 1.3249 22 7 2.0226 -0.6981 1.1953 23 6 1.1537 -1.1101 2.1703 24 1 0.1360 -1.3649 1.9142 25 6 1.5812 -1.2000 3.4879 26 7 2.7045 -0.6215 3.8564 27 14 0.5621 -2.1425 4.7380 28 1 0.4323 -3.5571 4.3056 29 1 1.2311 -2.0897 6.0628 30 1 -0.7870 -1.5300 4.8396 31 1 -0.3633 0.5094 0.8925 32 1 -0.3634 0.5183 -0.8875 33 1 -0.3633 -1.0277 -0.0051 34 1 1.7658 -0.1694 -2.1361 35 1 1.6029 -1.7269 -1.2890 36 1 4.0061 0.1460 -1.0995 37 1 3.9376 -1.3474 -2.0653 38 1 2.5326 -3.1228 -0.5316 39 1 1.6595 -4.7264 -0.7015 40 1 0.6347 -6.9590 -0.8284 41 1 4.7517 -6.3024 1.8142 42 1 3.3769 -8.2784 3.7209 43 1 4.4753 -9.6662 3.5329 44 1 5.0211 -8.0320 3.0850 45 1 1.9380 -9.7423 2.6571 46 1 2.8323 -10.8655 1.5799 47 1 0.6201 -9.4135 0.7245 48 1 1.9575 -9.8767 -0.3785 49 1 3.6518 -1.5691 2.1990 50 1 3.9903 0.0037 1.4316 51 1 3.0033 -0.6847 4.7770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072041360.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:13 Heat of formation + Delta-G solvation = 27.405543 kcal Electronic energy + Delta-G solvation = -31401.166716 eV Core-core repulsion = 27493.964381 eV Total energy + Delta-G solvation = -3907.202335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.82878 -39.43281 -37.67125 -36.31377 -34.11562 -32.87426 -32.72066 -30.95528 -29.90982 -29.82412 -28.96599 -26.19585 -25.82276 -24.98382 -23.58293 -22.28576 -22.13841 -21.08869 -20.60182 -20.00562 -18.69890 -17.58948 -16.37441 -16.21295 -15.95947 -15.63414 -15.23013 -15.18365 -14.57758 -14.26003 -14.00099 -13.90177 -13.76617 -13.64727 -13.35229 -13.20535 -13.04692 -12.87353 -12.60342 -12.49738 -12.26060 -12.00554 -11.77621 -11.66163 -11.54196 -11.19351 -11.15151 -10.98931 -10.93088 -10.86402 -10.67858 -10.37632 -10.32639 -9.99146 -9.94364 -9.55025 -9.43986 -9.32793 -8.77842 -8.41702 -8.31122 -7.82110 -6.57281 -5.71635 -3.15754 0.99872 1.40789 3.15574 3.39566 3.46187 3.46727 3.46806 3.86532 4.11707 4.37520 4.42417 4.52599 4.85944 4.87455 5.04259 5.16407 5.23165 5.29464 5.32344 5.34103 5.37755 5.39653 5.45900 5.49459 5.52933 5.62258 5.64330 5.69734 5.72833 5.87233 6.02867 6.12971 6.15947 6.21224 6.34093 6.36070 6.39035 6.43427 6.45687 6.51492 6.57676 6.62574 6.71767 6.81640 6.93236 7.06194 7.10607 7.14207 7.42801 7.74038 7.86296 8.14393 8.52409 8.82198 9.26742 9.91370 10.47124 11.36208 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.003916 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.815006 B = 7147.554563 C = 8037.018841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.076 0.924 8 N -0.692 5.692 9 C 0.557 3.443 10 O -0.543 6.543 11 C -0.094 4.094 12 C -0.105 4.105 13 C -0.088 4.088 14 C -0.126 4.126 15 C 0.081 3.919 16 C -0.078 4.078 17 N -0.479 5.479 18 C 0.013 3.987 19 C 0.044 3.956 20 C -0.084 4.084 21 C 0.162 3.838 22 N -0.583 5.583 23 C -0.250 4.250 24 H 0.067 0.933 25 C 0.007 3.993 26 N -0.899 5.899 27 Si 0.894 3.106 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.394 0.606 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.025 0.975 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -14.016 -9.919 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.094 0.906 8 N -0.343 5.343 9 C 0.343 3.657 10 O -0.422 6.422 11 C -0.098 4.098 12 C -0.124 4.124 13 C -0.107 4.107 14 C -0.129 4.129 15 C -0.016 4.016 16 C -0.100 4.100 17 N -0.193 5.193 18 C -0.133 4.133 19 C -0.082 4.082 20 C -0.121 4.121 21 C 0.035 3.965 22 N -0.306 5.306 23 C -0.379 4.379 24 H 0.085 0.915 25 C -0.192 4.192 26 N -0.543 5.543 27 Si 0.725 3.275 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.210 1.210 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.230 0.770 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.107 0.893 49 H 0.116 0.884 50 H 0.043 0.957 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.507 -14.137 -9.493 17.036 hybrid contribution -1.414 -0.204 0.974 1.730 sum -1.921 -14.342 -8.518 16.791 Atomic orbital electron populations 1.21798 0.96157 1.01165 1.00192 1.20454 0.92860 0.93651 0.87198 0.95764 1.22062 0.95190 1.00590 0.99116 1.21697 0.96987 1.00190 0.96820 1.21807 0.97021 0.81674 0.98275 0.90571 1.45749 1.29204 1.08503 1.50825 1.18041 0.84121 0.83975 0.79583 1.90740 1.25262 1.85017 1.41165 1.19794 0.96528 0.93879 0.99571 1.21161 0.95051 0.97128 0.99102 1.20264 0.99823 0.91286 0.99318 1.20636 0.95926 0.95528 1.00857 1.19496 0.93979 0.89651 0.98494 1.20488 1.00570 0.89035 0.99895 1.60638 1.30856 1.08337 1.19475 1.22599 1.00946 1.02626 0.87143 1.23284 0.89326 0.97357 0.98240 1.21312 1.00362 0.91734 0.98702 1.21196 0.83693 0.97042 0.94558 1.44040 1.02724 1.64872 1.18951 1.19020 0.94598 1.38158 0.86145 0.91530 1.25024 0.97631 0.99580 0.96933 1.69963 1.23116 1.44303 1.16929 0.86497 0.79640 0.80306 0.81094 1.21196 1.21699 1.20989 0.92040 0.94446 0.93003 0.92838 0.92795 0.91058 0.92994 0.76967 0.85326 0.85597 0.84815 0.94086 0.90618 0.90301 0.92114 0.88725 0.89921 0.89347 0.88419 0.95695 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.94 37.16 0.30 -2.13 16 2 C 0.17 3.22 3.50 -67.62 -0.24 2.98 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.05 5.20 -26.62 -0.14 -2.19 16 5 C -0.12 -1.88 5.59 -26.68 -0.15 -2.02 16 6 C 0.12 2.27 2.81 -67.81 -0.19 2.08 16 7 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 8 N -0.69 -12.72 4.87 -54.63 -0.27 -12.99 16 9 C 0.56 11.12 7.74 -12.32 -0.10 11.03 16 10 O -0.54 -12.68 15.99 5.32 0.09 -12.60 16 11 C -0.09 -1.62 5.86 -105.06 -0.62 -2.23 16 12 C -0.10 -1.50 9.54 -39.16 -0.37 -1.88 16 13 C -0.09 -1.11 10.01 -39.72 -0.40 -1.50 16 14 C -0.13 -1.61 6.23 -103.91 -0.65 -2.26 16 15 C 0.08 1.17 5.95 -83.42 -0.50 0.67 16 16 C -0.08 -1.30 9.07 -38.85 -0.35 -1.65 16 17 N -0.48 -5.85 5.31 -176.88 -0.94 -6.78 16 18 C 0.01 0.15 9.16 60.06 0.55 0.70 16 19 C 0.04 0.41 6.91 -2.44 -0.02 0.39 16 20 C -0.08 -0.78 7.04 -26.60 -0.19 -0.97 16 21 C 0.16 3.87 4.89 -3.71 -0.02 3.86 16 22 N -0.58 -13.81 2.91 -164.80 -0.48 -14.29 16 23 C -0.25 -6.58 8.60 -15.06 -0.13 -6.71 16 24 H 0.07 1.71 6.21 -52.49 -0.33 1.39 16 25 C 0.01 0.20 4.96 -17.43 -0.09 0.12 16 26 N -0.90 -26.54 11.14 55.49 0.62 -25.92 16 27 Si 0.89 22.23 29.58 -169.99 -5.03 17.20 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 31 H 0.06 1.21 7.62 -51.93 -0.40 0.82 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.93 7.45 -51.93 -0.39 0.54 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.83 6.40 -51.93 -0.33 0.49 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.39 6.42 4.80 -40.82 -0.20 6.23 16 39 H 0.13 1.62 6.40 -52.49 -0.34 1.29 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.13 2.29 6.94 -52.49 -0.36 1.92 16 42 H 0.04 0.47 8.09 -51.93 -0.42 0.05 16 43 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.08 0.91 7.30 -51.93 -0.38 0.53 16 45 H 0.06 0.53 7.84 -51.93 -0.41 0.13 16 46 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.10 2.78 6.06 -51.93 -0.31 2.46 16 50 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -32.40 392.59 -11.42 -43.82 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.04 Total: 7.34 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -3.29 Total: -1.70 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -1.07 Total: -59.98 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.40 -11.42 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072041360.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.227 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds