Wall clock time and date at job start Wed Apr 1 2020 03:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58799 * 2 1 4 4 C 1.53164 * 109.58710 * 239.56747 * 2 1 3 5 5 C 1.53049 * 109.32687 * 185.56974 * 4 2 1 6 6 C 1.53041 * 109.52250 * 61.37079 * 5 4 2 7 7 H 1.09006 * 109.49082 * 178.69048 * 6 5 4 8 8 N 1.46496 * 109.49854 * 58.63124 * 6 5 4 9 9 C 1.34776 * 120.00382 * 154.99628 * 8 6 5 10 10 O 1.21554 * 120.00011 * 359.97438 * 9 8 6 11 11 C 1.47861 * 120.00101 * 179.97438 * 9 8 6 12 12 C 1.39607 * 120.02713 * 359.71853 * 11 9 8 13 13 C 1.37996 * 119.74391 * 179.87079 * 12 11 9 14 14 C 1.38092 * 120.28057 * 0.53731 * 13 12 11 15 15 C 1.39083 * 120.70887 * 359.51072 * 14 13 12 16 16 C 1.39155 * 119.24450 * 0.30761 * 15 14 13 17 17 N 1.40106 * 110.93634 * 180.68676 * 15 14 13 18 18 C 1.46898 * 111.00201 * 219.73077 * 17 15 14 19 19 C 1.47901 * 107.86999 * 341.53901 * 17 15 14 20 20 C 1.51625 * 131.37794 * 179.36239 * 14 13 12 21 21 C 1.53191 * 109.31761 * 298.64048 * 6 5 4 22 22 N 1.46924 * 109.58887 * 120.28490 * 2 1 3 23 23 C 1.36943 * 120.63047 * 353.37615 * 22 2 1 24 24 H 1.07994 * 119.99694 * 29.03344 * 23 22 2 25 25 C 1.38804 * 119.99860 * 209.04061 * 23 22 2 26 26 N 1.31617 * 120.00554 * 15.00542 * 25 23 22 27 27 Si 1.86804 * 119.99695 * 195.01258 * 25 23 22 28 28 H 1.48494 * 109.47415 * 59.99802 * 27 25 23 29 29 H 1.48506 * 109.47200 * 179.97438 * 27 25 23 30 30 H 1.48504 * 109.46821 * 299.99362 * 27 25 23 31 31 H 1.09004 * 109.47092 * 299.71657 * 1 2 3 32 32 H 1.09005 * 109.47173 * 59.71579 * 1 2 3 33 33 H 1.09001 * 109.47141 * 179.71731 * 1 2 3 34 34 H 1.08996 * 109.48091 * 65.62734 * 4 2 1 35 35 H 1.08996 * 109.50689 * 305.53268 * 4 2 1 36 36 H 1.09006 * 109.46012 * 301.36224 * 5 4 2 37 37 H 1.08993 * 109.46166 * 181.38763 * 5 4 2 38 38 H 0.97009 * 119.99871 * 334.99361 * 8 6 5 39 39 H 1.07999 * 120.12679 * 0.13447 * 12 11 9 40 40 H 1.08000 * 119.86037 * 180.26040 * 13 12 11 41 41 H 1.08001 * 119.96956 * 179.79526 * 16 15 14 42 42 H 1.08998 * 109.46896 * 60.00196 * 18 17 15 43 43 H 1.09008 * 109.47118 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.47108 * 299.99541 * 18 17 15 45 45 H 1.09000 * 110.77904 * 269.07640 * 19 17 15 46 46 H 1.09008 * 110.77557 * 145.64918 * 19 17 15 47 47 H 1.08993 * 110.74276 * 314.45011 * 20 14 13 48 48 H 1.09000 * 110.73593 * 77.76847 * 20 14 13 49 49 H 1.08993 * 109.58865 * 174.42189 * 21 6 5 50 50 H 1.08998 * 109.58512 * 294.85100 * 21 6 5 51 51 H 0.96998 * 120.00355 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7309 -1.2442 5 6 3.5675 -0.8494 -1.1692 6 6 3.9568 -1.6656 0.0655 7 1 5.0412 -1.7694 0.1057 8 7 3.3412 -2.9927 -0.0116 9 6 3.8979 -4.0328 0.6400 10 8 4.9113 -3.8699 1.2913 11 6 3.2762 -5.3721 0.5627 12 6 2.1091 -5.5587 -0.1803 13 6 1.5352 -6.8117 -0.2507 14 6 2.1043 -7.8768 0.4190 15 6 3.2662 -7.7080 1.1646 16 6 3.8511 -6.4474 1.2359 17 7 3.6710 -8.9188 1.7418 18 6 4.1682 -8.7103 3.1083 19 6 2.5104 -9.8355 1.7342 20 6 1.6887 -9.3310 0.5260 21 6 3.4651 -0.9454 1.3249 22 7 2.0226 -0.6981 1.1953 23 6 1.1537 -1.1101 2.1703 24 1 0.1360 -1.3649 1.9142 25 6 1.5812 -1.2000 3.4879 26 7 2.7045 -0.6215 3.8564 27 14 0.5621 -2.1425 4.7380 28 1 0.4323 -3.5571 4.3056 29 1 1.2311 -2.0897 6.0628 30 1 -0.7870 -1.5300 4.8396 31 1 -0.3633 0.5094 0.8925 32 1 -0.3634 0.5183 -0.8875 33 1 -0.3633 -1.0277 -0.0051 34 1 1.7658 -0.1694 -2.1361 35 1 1.6029 -1.7269 -1.2890 36 1 4.0061 0.1460 -1.0995 37 1 3.9376 -1.3474 -2.0653 38 1 2.5326 -3.1228 -0.5316 39 1 1.6595 -4.7264 -0.7015 40 1 0.6347 -6.9590 -0.8284 41 1 4.7517 -6.3024 1.8142 42 1 3.3769 -8.2784 3.7209 43 1 4.4753 -9.6662 3.5329 44 1 5.0211 -8.0320 3.0850 45 1 1.9380 -9.7423 2.6571 46 1 2.8323 -10.8655 1.5799 47 1 0.6201 -9.4135 0.7245 48 1 1.9575 -9.8767 -0.3785 49 1 3.6518 -1.5691 2.1990 50 1 3.9903 0.0037 1.4316 51 1 3.0033 -0.6847 4.7770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072041360.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:12 Heat of formation + Delta-G solvation = 6.677596 kcal Electronic energy + Delta-G solvation = -31402.065547 eV Core-core repulsion = 27493.964381 eV Total energy + Delta-G solvation = -3908.101166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.88293 -40.89916 -39.22752 -37.45934 -35.82401 -34.52017 -33.83348 -32.40926 -31.73983 -30.90425 -30.05478 -27.84229 -26.78812 -26.72308 -24.77554 -23.86203 -23.30967 -22.16257 -22.02840 -21.38892 -20.37295 -18.85905 -18.22571 -17.36871 -17.06260 -16.79053 -16.75836 -16.51316 -15.99935 -15.90476 -15.60026 -15.38041 -15.01034 -14.83893 -14.66174 -14.49745 -14.45530 -14.09791 -13.94336 -13.71742 -13.58674 -13.14862 -12.97636 -12.89588 -12.80124 -12.61181 -12.57207 -12.48206 -12.41035 -12.34984 -12.13932 -12.08475 -12.06591 -11.57342 -11.23293 -11.05480 -10.98035 -10.95074 -10.51596 -10.05569 -9.79527 -8.81798 -8.57099 -7.81712 -5.26598 -0.17688 0.32166 1.37662 1.41740 1.45904 1.85167 2.20647 2.49273 2.69260 2.89967 3.34341 3.48269 3.63321 3.63843 3.79566 3.96623 4.01769 4.10226 4.13031 4.17172 4.19754 4.24275 4.34971 4.43068 4.49074 4.50060 4.65409 4.71173 4.74362 4.80260 4.81887 4.83536 4.93816 4.97381 5.01340 5.05009 5.08373 5.12515 5.19344 5.27521 5.32244 5.33394 5.36545 5.56461 5.58895 5.62867 5.68935 5.74319 5.75806 5.86939 6.07277 6.44514 6.65613 7.18913 7.31624 7.93833 8.44271 9.23384 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.003916 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.815006 B = 7147.554563 C = 8037.018841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.014 0.986 4 C -0.119 4.119 5 C -0.110 4.110 6 C 0.126 3.874 7 H 0.063 0.937 8 N -0.681 5.681 9 C 0.548 3.452 10 O -0.593 6.593 11 C -0.122 4.122 12 C -0.105 4.105 13 C -0.082 4.082 14 C -0.123 4.123 15 C 0.071 3.929 16 C -0.104 4.104 17 N -0.489 5.489 18 C 0.014 3.986 19 C 0.040 3.960 20 C -0.078 4.078 21 C 0.172 3.828 22 N -0.594 5.594 23 C -0.234 4.234 24 H 0.079 0.921 25 C -0.055 4.055 26 N -0.938 5.938 27 Si 0.947 3.053 28 H -0.285 1.285 29 H -0.305 1.305 30 H -0.268 1.268 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.407 0.593 39 H 0.147 0.853 40 H 0.166 0.834 41 H 0.108 0.892 42 H 0.032 0.968 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.120 0.880 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.046 0.954 50 H -0.004 1.004 51 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 -16.388 -13.334 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.158 4.158 5 C -0.148 4.148 6 C 0.020 3.980 7 H 0.081 0.919 8 N -0.332 5.332 9 C 0.337 3.663 10 O -0.475 6.475 11 C -0.126 4.126 12 C -0.124 4.124 13 C -0.100 4.100 14 C -0.126 4.126 15 C -0.027 4.027 16 C -0.126 4.126 17 N -0.203 5.203 18 C -0.132 4.132 19 C -0.085 4.085 20 C -0.115 4.115 21 C 0.045 3.955 22 N -0.318 5.318 23 C -0.364 4.364 24 H 0.096 0.904 25 C -0.250 4.250 26 N -0.585 5.585 27 Si 0.777 3.223 28 H -0.212 1.212 29 H -0.232 1.232 30 H -0.193 1.193 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.246 0.754 39 H 0.165 0.835 40 H 0.184 0.816 41 H 0.126 0.874 42 H 0.050 0.950 43 H 0.121 0.879 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.138 0.862 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.065 0.935 50 H 0.014 0.986 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.833 -16.515 -12.966 21.344 hybrid contribution -0.396 0.499 2.000 2.099 sum -4.229 -16.017 -10.965 19.866 Atomic orbital electron populations 1.21728 0.94538 1.01472 1.00827 1.20784 0.94295 0.93191 0.86934 0.96872 1.21961 0.94489 1.01134 0.98194 1.21676 0.97538 0.99859 0.95757 1.21537 0.96255 0.82274 0.97939 0.91935 1.45620 1.29443 1.07680 1.50417 1.18658 0.83604 0.85454 0.78608 1.90701 1.27578 1.85966 1.43285 1.19657 0.98432 0.92252 1.02250 1.21385 0.93806 0.98853 0.98377 1.20682 1.00546 0.90109 0.98683 1.21206 0.94663 0.97666 0.99088 1.19677 0.94534 0.89436 0.99098 1.20411 1.00599 0.90644 1.00904 1.60679 1.32320 1.07727 1.19591 1.22605 1.00045 1.03656 0.86921 1.23503 0.88366 0.97829 0.98767 1.21457 1.01741 0.88972 0.99357 1.20839 0.84333 0.95200 0.95142 1.44257 1.02105 1.65565 1.19873 1.19390 0.95058 1.35593 0.86379 0.90396 1.25714 0.98841 1.01438 0.99001 1.70150 1.25190 1.46862 1.16291 0.85630 0.78918 0.79153 0.78621 1.21218 1.23168 1.19298 0.94732 0.90505 0.92792 0.88886 0.91750 0.90767 0.89560 0.75435 0.83549 0.81636 0.87408 0.94964 0.87875 0.92069 0.91577 0.86179 0.87467 0.87451 0.93544 0.98558 0.94978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.94 71.98 0.57 -3.65 16 2 C 0.15 5.71 3.50 44.96 0.16 5.86 16 3 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 4 C -0.12 -3.28 5.20 30.67 0.16 -3.12 16 5 C -0.11 -3.22 5.59 30.62 0.17 -3.05 16 6 C 0.13 4.97 2.81 45.07 0.13 5.10 16 7 H 0.06 2.63 7.58 -2.38 -0.02 2.61 16 8 N -0.68 -25.20 4.87 -445.02 -2.17 -27.37 16 9 C 0.55 23.10 7.74 86.79 0.67 23.77 16 10 O -0.59 -30.21 15.99 -3.88 -0.06 -30.28 16 11 C -0.12 -4.33 5.86 -20.15 -0.12 -4.45 16 12 C -0.10 -2.81 9.54 22.54 0.22 -2.60 16 13 C -0.08 -1.77 10.01 22.18 0.22 -1.54 16 14 C -0.12 -2.79 6.23 -19.40 -0.12 -2.91 16 15 C 0.07 2.00 5.95 38.24 0.23 2.23 16 16 C -0.10 -3.63 9.07 22.74 0.21 -3.43 16 17 N -0.49 -11.38 5.31 -713.51 -3.79 -15.17 16 18 C 0.01 0.31 9.16 127.69 1.17 1.48 16 19 C 0.04 0.62 6.91 86.65 0.60 1.22 16 20 C -0.08 -1.11 7.04 30.68 0.22 -0.89 16 21 C 0.17 8.70 4.89 86.36 0.42 9.12 16 22 N -0.59 -28.54 2.91 -675.31 -1.96 -30.50 16 23 C -0.23 -12.46 8.60 84.03 0.72 -11.74 16 24 H 0.08 3.94 6.21 -2.91 -0.02 3.92 16 25 C -0.06 -3.20 4.96 84.86 0.42 -2.78 16 26 N -0.94 -58.89 11.14 21.65 0.24 -58.65 16 27 Si 0.95 47.13 29.58 68.60 2.03 49.16 16 28 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 29 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 30 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 31 H 0.03 1.30 7.62 -2.39 -0.02 1.28 16 32 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.05 1.74 7.45 -2.39 -0.02 1.73 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.68 6.40 -2.39 -0.02 1.66 16 36 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.41 12.58 4.80 -92.70 -0.44 12.13 16 39 H 0.15 3.27 6.40 -2.91 -0.02 3.25 16 40 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.11 4.18 6.94 -2.91 -0.02 4.16 16 42 H 0.03 0.75 8.09 -2.39 -0.02 0.73 16 43 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.06 1.54 7.30 -2.39 -0.02 1.52 16 45 H 0.07 0.95 7.84 -2.39 -0.02 0.93 16 46 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.05 2.84 6.06 -2.39 -0.01 2.83 16 50 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 51 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -78.38 392.59 0.82 -77.56 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.49 Total: 26.62 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 6.04 Total: 8.62 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -7.68 Total: -131.68 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.06 Total: -30.28 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -78.38 0.82 -77.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072041360.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.242 kcal (2) G-P(sol) polarization free energy of solvation -78.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds