Wall clock time and date at job start Wed Apr 1 2020 03:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.99704 * 2 1 4 4 C 1.54334 * 109.77666 * 121.16351 * 2 1 3 5 5 H 1.09002 * 110.51130 * 215.80571 * 4 2 1 6 6 N 1.46499 * 111.00478 * 338.95859 * 4 2 1 7 7 C 1.36938 * 119.99697 * 200.23410 * 6 4 2 8 8 H 1.07996 * 120.00342 * 0.02562 * 7 6 4 9 9 C 1.38810 * 119.99615 * 179.97438 * 7 6 4 10 10 N 1.31622 * 120.00343 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 120.00078 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47125 * 90.00214 * 11 9 7 13 13 H 1.48497 * 109.46887 * 210.00574 * 11 9 7 14 14 H 1.48499 * 109.46849 * 329.99820 * 11 9 7 15 15 C 1.55160 * 103.01822 * 97.50062 * 4 2 1 16 16 C 1.54908 * 101.58301 * 35.30547 * 15 4 2 17 17 N 1.47018 * 109.88377 * 238.90445 * 2 1 3 18 18 C 1.34778 * 125.64579 * 59.55698 * 17 2 1 19 19 O 1.21276 * 120.00155 * 359.72284 * 18 17 2 20 20 C 1.50705 * 119.99878 * 179.71419 * 18 17 2 21 21 H 1.09007 * 110.77800 * 61.79907 * 20 18 17 22 22 C 1.54593 * 110.72583 * 298.55213 * 20 18 17 23 23 C 1.53997 * 105.13807 * 219.68092 * 22 20 18 24 24 N 1.47899 * 107.05889 * 358.77516 * 23 22 20 25 25 C 1.39677 * 110.99903 * 145.84248 * 24 23 22 26 26 C 1.38915 * 120.07128 * 119.85193 * 25 24 23 27 27 C 1.38106 * 119.92169 * 179.76803 * 26 25 24 28 28 C 1.38291 * 120.07080 * 0.50463 * 27 26 25 29 29 C 1.38281 * 120.15304 * 359.75100 * 28 27 26 30 30 C 1.38107 * 120.07444 * 359.97438 * 29 28 27 31 31 C 1.48538 * 105.82096 * 25.32759 * 24 23 22 32 32 H 1.08994 * 109.47018 * 179.64307 * 1 2 3 33 33 H 1.08997 * 109.47238 * 299.64097 * 1 2 3 34 34 H 1.09000 * 109.46928 * 59.64322 * 1 2 3 35 35 H 0.96998 * 119.99666 * 20.23272 * 6 4 2 36 36 H 0.97000 * 120.00594 * 180.02562 * 10 9 7 37 37 H 1.08993 * 110.99978 * 277.22673 * 15 4 2 38 38 H 1.09005 * 111.03138 * 153.39487 * 15 4 2 39 39 H 1.08994 * 110.36394 * 204.15425 * 16 15 4 40 40 H 1.08999 * 110.36531 * 81.83128 * 16 15 4 41 41 H 1.09004 * 110.30922 * 100.76438 * 22 20 18 42 42 H 1.08998 * 110.30989 * 338.59559 * 22 20 18 43 43 H 1.09004 * 109.91456 * 118.12612 * 23 22 20 44 44 H 1.09001 * 109.91811 * 239.22178 * 23 22 20 45 45 H 1.08001 * 120.03648 * 0.02562 * 26 25 24 46 46 H 1.07989 * 119.96252 * 180.24792 * 27 26 25 47 47 H 1.08004 * 119.92264 * 179.71865 * 28 27 26 48 48 H 1.08003 * 119.96532 * 180.02562 * 29 28 27 49 49 H 1.07998 * 120.03637 * 179.97438 * 30 29 28 50 50 H 1.09007 * 110.66246 * 79.22764 * 31 24 23 51 51 H 1.08993 * 110.66698 * 202.35458 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 1 2.9606 -0.2815 1.6196 6 7 1.0287 -0.8106 2.2892 7 6 1.3908 -1.0480 3.5884 8 1 2.4308 -1.1914 3.8415 9 6 0.4211 -1.1034 4.5800 10 7 -0.8464 -0.9282 4.2716 11 14 0.9150 -1.4266 6.3524 12 1 1.1844 -0.1354 7.0345 13 1 -0.1866 -2.1356 7.0517 14 1 2.1397 -2.2660 6.3797 15 6 2.3562 -2.1697 0.6914 16 6 2.8614 -1.8465 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.7753 -0.3844 -2.4657 19 8 1.0747 0.5728 -2.7179 20 6 2.3613 -1.2053 -3.5855 21 1 1.9992 -2.2325 -3.5424 22 6 3.9062 -1.1674 -3.5411 23 6 4.3485 -1.0696 -5.0129 24 7 3.1204 -1.0837 -5.8369 25 6 3.2699 -0.2832 -6.9717 26 6 3.1528 -0.8420 -8.2381 27 6 3.2964 -0.0467 -9.3580 28 6 3.5668 1.3024 -9.2198 29 6 3.6892 1.8609 -7.9607 30 6 3.5412 1.0724 -6.8365 31 6 2.0384 -0.5673 -4.9600 32 1 -0.3633 -1.0276 -0.0064 33 1 -0.3633 0.5082 0.8932 34 1 -0.3633 0.5194 -0.8868 35 1 0.0947 -0.6814 2.0619 36 1 -1.5241 -0.9666 4.9646 37 1 1.4522 -2.7778 0.6579 38 1 3.1326 -2.6597 1.2790 39 1 2.7178 -2.7048 -1.3932 40 1 3.9124 -1.5588 -0.7114 41 1 4.2941 -2.0805 -3.0893 42 1 4.2474 -0.2945 -2.9846 43 1 4.8942 -0.1401 -5.1755 44 1 4.9803 -1.9203 -5.2681 45 1 2.9456 -1.8964 -8.3466 46 1 3.2015 -0.4797 -10.3427 47 1 3.6831 1.9212 -10.0973 48 1 3.9000 2.9150 -7.8563 49 1 3.6373 1.5091 -5.8535 50 1 2.0792 0.5203 -4.8984 51 1 1.0631 -0.8971 -5.3176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074706751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:23 Heat of formation + Delta-G solvation = 26.803813 kcal Electronic energy + Delta-G solvation = -30089.079852 eV Core-core repulsion = 26181.851424 eV Total energy + Delta-G solvation = -3907.228428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.86809 -39.82719 -38.12600 -37.12192 -34.27062 -33.08657 -31.54073 -31.21052 -30.73282 -29.49706 -29.02930 -28.35004 -25.24341 -24.18694 -23.27527 -23.00241 -22.59920 -21.49935 -20.85206 -19.52496 -18.68386 -17.80316 -17.43860 -16.90776 -16.45454 -15.88362 -15.59691 -15.23073 -14.91680 -14.57501 -14.45267 -14.25291 -13.87246 -13.72532 -13.66179 -13.43387 -13.33199 -12.95747 -12.56645 -12.45695 -12.43813 -12.14121 -11.85533 -11.77704 -11.63307 -11.53785 -11.50696 -11.44443 -11.20655 -11.04735 -10.99795 -10.82783 -10.48281 -10.23794 -10.00931 -9.74543 -9.48395 -9.22600 -8.97414 -8.93676 -8.88421 -8.42649 -7.04822 -5.83814 -3.13816 0.96985 1.10982 2.72942 3.04177 3.39485 3.43743 3.44712 3.46503 3.62421 4.22767 4.42640 4.52931 4.54461 4.65503 4.67688 4.81849 4.82953 5.00097 5.05915 5.13562 5.16302 5.19553 5.26009 5.33997 5.38468 5.49208 5.50702 5.51642 5.57188 5.61233 5.65473 5.72094 5.76350 5.79903 5.81169 6.02764 6.08315 6.09308 6.20582 6.21493 6.22116 6.29956 6.38745 6.52109 6.53986 6.54199 6.69385 6.80910 6.96856 7.10430 7.63889 7.74102 8.30139 8.34854 9.46225 10.01312 10.36181 11.38569 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.034342 B = 0.001986 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.134320 B =14098.245772 C =14425.758225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.070 0.930 4 C 0.174 3.826 5 H 0.062 0.938 6 N -0.717 5.717 7 C -0.244 4.244 8 H 0.071 0.929 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C -0.154 4.154 16 C 0.098 3.902 17 N -0.606 5.606 18 C 0.535 3.465 19 O -0.543 6.543 20 C -0.109 4.109 21 H 0.110 0.890 22 C -0.120 4.120 23 C 0.041 3.959 24 N -0.486 5.486 25 C 0.083 3.917 26 C -0.095 4.095 27 C -0.116 4.116 28 C -0.125 4.125 29 C -0.111 4.111 30 C -0.147 4.147 31 C 0.061 3.939 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.391 0.609 36 H 0.257 0.743 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.066 0.934 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.687 -0.455 -25.132 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.088 0.912 4 C 0.062 3.938 5 H 0.079 0.921 6 N -0.361 5.361 7 C -0.375 4.375 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.195 4.195 16 C -0.025 4.025 17 N -0.339 5.339 18 C 0.322 3.678 19 O -0.420 6.420 20 C -0.131 4.131 21 H 0.128 0.872 22 C -0.158 4.158 23 C -0.086 4.086 24 N -0.207 5.207 25 C -0.011 4.011 26 C -0.114 4.114 27 C -0.135 4.135 28 C -0.143 4.143 29 C -0.130 4.130 30 C -0.167 4.167 31 C -0.065 4.065 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.229 0.771 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.084 0.916 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.231 -0.481 -25.314 27.698 hybrid contribution 0.139 0.550 1.283 1.403 sum 11.370 0.069 -24.031 26.585 Atomic orbital electron populations 1.21997 0.94545 1.02446 1.02658 1.21830 0.95447 0.95665 0.84564 0.91175 1.21165 0.93193 0.92056 0.87405 0.92059 1.42658 1.05138 1.85321 1.02950 1.19226 0.92962 1.41339 0.84001 0.91070 1.24764 0.95303 1.02498 0.98163 1.69658 0.99327 1.56309 1.32539 0.86174 0.77207 0.77737 0.84930 1.21678 1.21761 1.20726 1.23556 1.01705 1.01301 0.92965 1.22424 0.94388 0.88482 0.97238 1.48580 1.49865 1.30553 1.04913 1.19919 0.80731 0.84822 0.82285 1.90686 1.38813 1.29249 1.83282 1.22159 0.96530 1.01074 0.93324 0.87190 1.22448 0.93471 1.03546 0.96382 1.22979 0.91978 1.01938 0.91666 1.62451 1.05203 1.48253 1.04790 1.19016 0.99716 0.90302 0.92045 1.21031 0.99307 1.00319 0.90703 1.21123 0.99928 0.93918 0.98520 1.21188 1.00404 0.95387 0.97334 1.21047 0.99789 0.99755 0.92382 1.21707 1.01218 0.94529 0.99284 1.23146 0.95095 0.98990 0.89285 0.92504 0.90283 0.92151 0.77110 0.93361 0.90655 0.90592 0.91286 0.91650 0.89665 0.90740 0.92980 0.89641 0.85312 0.85771 0.86079 0.86078 0.86140 0.91559 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 7.94 37.16 0.30 -2.67 16 2 C 0.13 2.23 3.49 -66.95 -0.23 2.00 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.17 3.26 3.44 -66.09 -0.23 3.03 16 5 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16 6 N -0.72 -17.10 5.02 -51.65 -0.26 -17.36 16 7 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 11 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C -0.15 -2.42 6.77 -24.58 -0.17 -2.59 16 16 C 0.10 1.20 5.49 -2.53 -0.01 1.19 16 17 N -0.61 -8.90 3.08 -163.02 -0.50 -9.40 16 18 C 0.53 7.86 6.88 -10.98 -0.08 7.79 16 19 O -0.54 -9.85 14.67 5.56 0.08 -9.77 16 20 C -0.11 -1.20 2.71 -89.91 -0.24 -1.44 16 21 H 0.11 1.11 7.96 -51.92 -0.41 0.70 16 22 C -0.12 -1.06 5.39 -25.37 -0.14 -1.20 16 23 C 0.04 0.36 6.51 -2.75 -0.02 0.34 16 24 N -0.49 -4.92 5.28 -167.16 -0.88 -5.81 16 25 C 0.08 0.84 4.85 -83.79 -0.41 0.44 16 26 C -0.09 -0.85 9.97 -39.38 -0.39 -1.25 16 27 C -0.12 -0.90 10.04 -39.61 -0.40 -1.29 16 28 C -0.13 -0.96 10.04 -39.55 -0.40 -1.36 16 29 C -0.11 -0.95 10.04 -39.61 -0.40 -1.35 16 30 C -0.15 -1.45 7.90 -39.38 -0.31 -1.76 16 31 C 0.06 0.70 5.44 -1.90 -0.01 0.69 16 32 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 33 H 0.08 1.61 6.74 -51.93 -0.35 1.26 16 34 H 0.06 1.14 6.74 -51.93 -0.35 0.79 16 35 H 0.39 9.91 4.97 -40.82 -0.20 9.71 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 0.71 7.55 -51.93 -0.39 0.32 16 40 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.08 0.62 7.84 -51.93 -0.41 0.21 16 42 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 43 H 0.05 0.46 6.69 -51.93 -0.35 0.11 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 48 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 49 H 0.12 1.20 7.05 -52.49 -0.37 0.83 16 50 H 0.07 0.86 6.03 -51.93 -0.31 0.54 16 51 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 397.13 15.07 5.98 5.98 Total: -1.00 -31.02 397.13 -11.42 -42.44 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.16 Total: 10.29 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.38 Total: -6.47 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.92 Total: -59.24 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.02 -11.42 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074706751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.244 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds