Wall clock time and date at job start Wed Apr 1 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.87663 * 2 1 4 4 C 1.54331 * 109.88598 * 121.17961 * 2 1 3 5 5 H 1.08993 * 110.72094 * 215.58780 * 4 2 1 6 6 N 1.46503 * 110.71378 * 338.85846 * 4 2 1 7 7 C 1.36934 * 119.99433 * 204.99564 * 6 4 2 8 8 H 1.07998 * 120.00502 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99796 * 179.97438 * 7 6 4 10 10 N 1.31621 * 119.99863 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99993 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47375 * 89.99948 * 11 9 7 13 13 H 1.48499 * 109.47317 * 209.99795 * 11 9 7 14 14 H 1.48498 * 109.47111 * 329.99567 * 11 9 7 15 15 C 1.55152 * 102.94289 * 97.22212 * 4 2 1 16 16 C 1.54909 * 101.58154 * 35.50426 * 15 4 2 17 17 N 1.47029 * 109.88246 * 238.98546 * 2 1 3 18 18 C 1.34774 * 125.64612 * 59.55611 * 17 2 1 19 19 O 1.21281 * 120.00313 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99927 * 180.02562 * 18 17 2 21 21 H 1.09000 * 110.62809 * 303.10414 * 20 18 17 22 22 C 1.55135 * 110.70459 * 66.40346 * 20 18 17 23 23 C 1.54906 * 101.65223 * 154.03650 * 22 20 18 24 24 N 1.47848 * 104.79670 * 322.93011 * 23 22 20 25 25 C 1.39671 * 110.99981 * 146.36341 * 24 23 22 26 26 C 1.38915 * 120.07283 * 202.71148 * 25 24 23 27 27 C 1.38105 * 119.92135 * 179.77195 * 26 25 24 28 28 C 1.38285 * 120.07762 * 0.50477 * 27 26 25 29 29 C 1.38279 * 120.14802 * 359.75172 * 28 27 26 30 30 C 1.38106 * 120.07678 * 359.97438 * 29 28 27 31 31 C 1.47441 * 108.56747 * 24.09217 * 24 23 22 32 32 H 1.08997 * 109.47272 * 179.56228 * 1 2 3 33 33 H 1.09000 * 109.46993 * 299.55915 * 1 2 3 34 34 H 1.08998 * 109.47297 * 59.55673 * 1 2 3 35 35 H 0.96998 * 120.00443 * 25.00488 * 6 4 2 36 36 H 0.97001 * 119.99311 * 180.02562 * 10 9 7 37 37 H 1.09005 * 111.00604 * 277.42845 * 15 4 2 38 38 H 1.08993 * 111.00490 * 153.58053 * 15 4 2 39 39 H 1.09013 * 110.36536 * 204.15496 * 16 15 4 40 40 H 1.08997 * 110.46350 * 81.87939 * 16 15 4 41 41 H 1.09000 * 110.99108 * 272.12367 * 22 20 18 42 42 H 1.09000 * 110.99688 * 35.94435 * 22 20 18 43 43 H 1.09002 * 110.37743 * 204.09525 * 23 22 20 44 44 H 1.09008 * 110.46927 * 81.80576 * 23 22 20 45 45 H 1.07995 * 120.03432 * 0.02562 * 26 25 24 46 46 H 1.08001 * 119.95899 * 180.25817 * 27 26 25 47 47 H 1.07999 * 119.92243 * 179.72282 * 28 27 26 48 48 H 1.08001 * 119.96205 * 179.97438 * 29 28 27 49 49 H 1.08001 * 120.04086 * 180.02562 * 30 29 28 50 50 H 1.08990 * 109.89194 * 239.61050 * 31 24 23 51 51 H 1.09001 * 109.88425 * 118.41447 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7514 1.2416 5 1 2.9656 -0.2856 1.6178 6 7 1.0293 -0.8059 2.2864 7 6 1.3954 -0.9440 3.5986 8 1 2.4402 -1.0123 3.8634 9 6 0.4237 -0.9951 4.5886 10 7 0.7757 -1.1273 5.8500 11 14 -1.3834 -0.8762 4.1307 12 1 -1.9211 -2.2375 3.8797 13 1 -2.1357 -0.2445 5.2442 14 1 -1.5300 -0.0521 2.9041 15 6 2.3518 -2.1705 0.6893 16 6 2.8568 -1.8487 -0.7394 17 7 2.0300 -0.7124 -1.1850 18 6 1.7752 -0.3810 -2.4663 19 8 1.0790 0.5799 -2.7172 20 6 2.3554 -1.2044 -3.5872 21 1 3.4417 -1.2483 -3.5089 22 6 1.7440 -2.6302 -3.5937 23 6 1.9016 -3.0314 -5.0816 24 7 1.6472 -1.7863 -5.8373 25 6 2.4277 -1.7348 -6.9944 26 6 2.7119 -0.5117 -7.5885 27 6 3.4879 -0.4640 -8.7299 28 6 3.9732 -1.6328 -9.2873 29 6 3.6878 -2.8524 -8.7015 30 6 2.9171 -2.9069 -7.5568 31 6 1.9296 -0.6372 -4.9578 32 1 -0.3633 -1.0276 -0.0079 33 1 -0.3633 0.5070 0.8939 34 1 -0.3634 0.5207 -0.8860 35 1 0.0909 -0.7443 2.0486 36 1 0.0966 -1.1634 6.5417 37 1 1.4451 -2.7746 0.6564 38 1 3.1269 -2.6637 1.2757 39 1 2.7086 -2.7061 -1.3962 40 1 3.9093 -1.5663 -0.7171 41 1 2.3097 -3.3006 -2.9466 42 1 0.6932 -2.6059 -3.3050 43 1 1.1697 -3.7937 -5.3487 44 1 2.9120 -3.3924 -5.2741 45 1 2.3298 0.4011 -7.1559 46 1 3.7127 0.4870 -9.1899 47 1 4.5762 -1.5929 -10.1825 48 1 4.0680 -3.7634 -9.1397 49 1 2.6949 -3.8598 -7.0995 50 1 1.0331 -0.0278 -4.8445 51 1 2.7373 -0.0382 -5.3783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074706752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:27 Heat of formation + Delta-G solvation = 34.483294 kcal Electronic energy + Delta-G solvation = -30265.436891 eV Core-core repulsion = 26358.541471 eV Total energy + Delta-G solvation = -3906.895421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10343 -39.97822 -38.20258 -37.24373 -34.45125 -33.16084 -31.70481 -31.59886 -30.88596 -29.74804 -29.19636 -28.52890 -25.55066 -24.34797 -23.40038 -22.93687 -22.59216 -21.24613 -20.91507 -19.55594 -18.77114 -18.10763 -18.03352 -17.40566 -16.05186 -15.86058 -15.77497 -15.46993 -14.91661 -14.75925 -14.65229 -14.18421 -14.12210 -14.02315 -13.69022 -13.44587 -13.25647 -13.09406 -12.78162 -12.68439 -12.46965 -12.20481 -12.12505 -11.90620 -11.83947 -11.75377 -11.44629 -11.35597 -11.29255 -11.16939 -11.12697 -10.93101 -10.60126 -10.37429 -10.12354 -10.08718 -9.73802 -9.56218 -9.22656 -9.02462 -8.55561 -8.11411 -7.38519 -5.85966 -3.22971 1.09839 1.10628 2.59550 2.93984 3.30301 3.31344 3.34284 3.40486 3.67557 4.07926 4.10736 4.45154 4.50932 4.58274 4.66560 4.72663 4.83980 4.86218 4.89314 4.92464 5.07581 5.10025 5.12554 5.16828 5.24431 5.31311 5.37410 5.43119 5.45238 5.49400 5.52306 5.64774 5.65689 5.67747 5.78572 5.81667 5.87483 5.92763 5.98610 6.11548 6.12305 6.27281 6.33381 6.43783 6.45412 6.51522 6.54540 6.61234 6.77806 6.97133 7.60601 7.88776 8.17748 8.32762 9.09933 9.82200 10.00824 11.31774 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029494 B = 0.002140 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.129049 B =13082.271199 C =13276.324023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.125 3.875 3 H 0.075 0.925 4 C 0.180 3.820 5 H 0.075 0.925 6 N -0.740 5.740 7 C -0.250 4.250 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.929 5.929 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C -0.153 4.153 16 C 0.091 3.909 17 N -0.606 5.606 18 C 0.539 3.461 19 O -0.539 6.539 20 C -0.127 4.127 21 H 0.103 0.897 22 C -0.120 4.120 23 C 0.040 3.960 24 N -0.476 5.476 25 C 0.114 3.886 26 C -0.158 4.158 27 C -0.091 4.091 28 C -0.155 4.155 29 C -0.092 4.092 30 C -0.167 4.167 31 C 0.053 3.947 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.368 0.632 36 H 0.261 0.739 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.125 0.875 50 H 0.106 0.894 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 -4.355 -28.129 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.021 3.979 3 H 0.093 0.907 4 C 0.068 3.932 5 H 0.093 0.907 6 N -0.384 5.384 7 C -0.379 4.379 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.576 5.576 11 Si 0.709 3.291 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.194 4.194 16 C -0.032 4.032 17 N -0.339 5.339 18 C 0.326 3.674 19 O -0.416 6.416 20 C -0.149 4.149 21 H 0.121 0.879 22 C -0.158 4.158 23 C -0.086 4.086 24 N -0.189 5.189 25 C 0.015 3.985 26 C -0.178 4.178 27 C -0.110 4.110 28 C -0.174 4.174 29 C -0.111 4.111 30 C -0.187 4.187 31 C -0.072 4.072 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.204 0.796 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.144 0.856 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.143 0.857 50 H 0.124 0.876 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.542 -3.805 -28.137 29.137 hybrid contribution -0.597 -0.084 0.033 0.604 sum 5.945 -3.889 -28.104 28.988 Atomic orbital electron populations 1.22077 0.95121 1.02150 1.02804 1.21898 0.95028 0.96200 0.84747 0.90709 1.21142 0.93047 0.92249 0.86732 0.90739 1.42948 1.03529 1.88656 1.03242 1.19060 0.94881 1.43001 0.80981 0.89032 1.24660 0.97367 1.01645 0.95090 1.69694 1.32594 1.56444 0.98910 0.86659 0.86901 0.77983 0.77556 1.20961 1.21536 1.20153 1.23519 1.01906 1.00981 0.93022 1.22552 0.94671 0.88612 0.97326 1.48543 1.50110 1.30452 1.04845 1.19767 0.80691 0.84728 0.82204 1.90680 1.38926 1.28926 1.83115 1.22457 1.01749 0.96295 0.94385 0.87893 1.22823 1.02736 0.94084 0.96193 1.23314 1.01474 0.91803 0.92027 1.60580 1.49064 1.04120 1.05139 1.19212 0.91467 0.94036 0.93831 1.20950 1.02135 0.96636 0.98121 1.21014 0.96531 0.98382 0.95081 1.21048 1.02686 0.92621 1.01069 1.20991 0.97253 0.97844 0.94992 1.21018 1.01602 0.97301 0.98823 1.23062 1.03253 0.92003 0.88923 0.92700 0.90793 0.91650 0.79604 0.92928 0.90773 0.90051 0.90869 0.91463 0.89071 0.89638 0.89158 0.91549 0.85566 0.86003 0.86323 0.86101 0.85682 0.87578 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 7.93 37.15 0.29 -2.51 16 2 C 0.12 2.03 3.48 -66.95 -0.23 1.80 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.18 3.18 3.48 -66.09 -0.23 2.95 16 5 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 6 N -0.74 -16.42 4.74 -51.65 -0.25 -16.66 16 7 C -0.25 -6.67 10.44 -15.06 -0.16 -6.83 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.31 13.97 55.49 0.78 -27.53 16 11 Si 0.88 21.51 27.74 -169.99 -4.71 16.80 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.35 6.48 56.52 0.37 -5.98 16 15 C -0.15 -2.23 6.77 -24.59 -0.17 -2.39 16 16 C 0.09 1.03 6.63 -2.53 -0.02 1.01 16 17 N -0.61 -8.26 3.08 -163.01 -0.50 -8.76 16 18 C 0.54 7.37 6.97 -10.99 -0.08 7.29 16 19 O -0.54 -9.19 14.32 5.56 0.08 -9.11 16 20 C -0.13 -1.26 2.71 -89.95 -0.24 -1.51 16 21 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 22 C -0.12 -1.02 5.75 -24.60 -0.14 -1.16 16 23 C 0.04 0.31 5.47 -2.30 -0.01 0.30 16 24 N -0.48 -4.76 5.27 -167.91 -0.89 -5.64 16 25 C 0.11 1.11 5.78 -83.79 -0.48 0.62 16 26 C -0.16 -1.48 8.59 -39.38 -0.34 -1.81 16 27 C -0.09 -0.74 10.04 -39.61 -0.40 -1.14 16 28 C -0.16 -1.18 10.04 -39.55 -0.40 -1.58 16 29 C -0.09 -0.70 10.04 -39.61 -0.40 -1.10 16 30 C -0.17 -1.42 8.66 -39.38 -0.34 -1.76 16 31 C 0.05 0.56 5.60 -2.83 -0.02 0.54 16 32 H 0.05 0.93 8.01 -51.93 -0.42 0.51 16 33 H 0.07 1.37 6.78 -51.93 -0.35 1.02 16 34 H 0.06 1.13 6.75 -51.93 -0.35 0.78 16 35 H 0.37 8.14 2.92 -40.82 -0.12 8.02 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.07 0.66 5.07 -51.92 -0.26 0.39 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.62 6.14 -51.93 -0.32 0.30 16 42 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.46 6.50 -51.92 -0.34 0.12 16 45 H 0.13 1.13 6.78 -52.49 -0.36 0.77 16 46 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 47 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 49 H 0.13 0.88 6.41 -52.49 -0.34 0.55 16 50 H 0.11 1.35 6.80 -51.93 -0.35 0.99 16 51 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -31.94 387.33 -10.85 -42.79 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.75 Total: 9.41 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.45 Total: -7.12 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.86 Total: -58.60 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.94 -10.85 -42.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074706752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.273 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds