Wall clock time and date at job start Wed Apr 1 2020 01:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47032 * 2 1 4 4 C 1.52999 * 109.47336 * 240.00405 * 2 1 3 5 5 N 1.46898 * 109.47341 * 120.00066 * 2 1 3 6 6 C 1.47848 * 110.99901 * 298.15909 * 5 2 1 7 7 C 1.54905 * 104.79531 * 146.36480 * 6 5 2 8 8 C 1.55149 * 101.65084 * 322.92568 * 7 6 5 9 9 F 1.39903 * 110.85314 * 277.20222 * 8 7 6 10 10 C 1.50702 * 110.70368 * 154.04090 * 8 7 6 11 11 O 1.21284 * 120.00124 * 256.39895 * 10 8 7 12 12 N 1.34783 * 120.00147 * 76.39779 * 10 8 7 13 13 C 1.46493 * 119.99819 * 180.27327 * 12 10 8 14 14 H 1.09000 * 110.88931 * 34.02940 * 13 12 10 15 15 C 1.54914 * 111.00604 * 270.14451 * 13 12 10 16 16 N 1.47463 * 104.81210 * 204.95091 * 15 13 12 17 17 C 1.36941 * 125.63058 * 204.13780 * 16 15 13 18 18 H 1.08000 * 119.99487 * 6.04840 * 17 16 15 19 19 C 1.38810 * 120.00303 * 186.04319 * 17 16 15 20 20 N 1.31624 * 119.99964 * 353.18642 * 19 17 16 21 21 Si 1.86800 * 120.00215 * 173.18388 * 19 17 16 22 22 H 1.48501 * 109.46905 * 94.98739 * 21 19 17 23 23 H 1.48493 * 109.47132 * 214.98774 * 21 19 17 24 24 H 1.48496 * 109.46892 * 334.98641 * 21 19 17 25 25 C 1.47029 * 108.72483 * 24.07096 * 16 15 13 26 26 C 1.54322 * 107.26892 * 358.97584 * 25 16 15 27 27 H 1.08998 * 110.87584 * 96.23639 * 26 25 16 28 28 O 1.42898 * 110.72074 * 219.44565 * 26 25 16 29 29 C 1.47447 * 111.00120 * 58.99715 * 5 2 1 30 30 H 1.08996 * 109.47066 * 306.01929 * 1 2 3 31 31 H 1.08997 * 109.46863 * 66.02474 * 1 2 3 32 32 H 1.08997 * 109.46880 * 186.02524 * 1 2 3 33 33 H 1.08999 * 109.47003 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47304 * 300.00314 * 3 2 1 35 35 H 1.09004 * 109.46848 * 60.00702 * 3 2 1 36 36 H 1.09011 * 109.46826 * 299.99957 * 4 2 1 37 37 H 1.08999 * 109.47511 * 59.99771 * 4 2 1 38 38 H 1.08999 * 109.47211 * 180.02562 * 4 2 1 39 39 H 1.09001 * 110.36821 * 265.18676 * 6 5 2 40 40 H 1.08997 * 110.37171 * 27.53097 * 6 5 2 41 41 H 1.09003 * 110.99115 * 204.84026 * 7 6 5 42 42 H 1.09000 * 110.99811 * 81.01945 * 7 6 5 43 43 H 0.96997 * 119.99997 * 0.02562 * 12 10 8 44 44 H 1.08995 * 110.36693 * 323.76103 * 15 13 12 45 45 H 1.09007 * 110.36510 * 86.08219 * 15 13 12 46 46 H 0.96996 * 120.00123 * 179.97438 * 20 19 17 47 47 H 1.08991 * 109.88192 * 239.55809 * 25 16 15 48 48 H 1.08999 * 109.87920 * 118.39041 * 25 16 15 49 49 H 0.96696 * 113.99490 * 293.52085 * 28 26 25 50 50 H 1.08998 * 109.88681 * 117.33528 * 29 5 2 51 51 H 1.09007 * 109.88410 * 356.15220 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 1.5822 0.0030 2.4285 7 6 1.3625 -1.1266 3.4654 8 6 0.7710 -2.2545 2.5794 9 9 -0.6041 -2.0738 2.3953 10 6 1.0529 -3.6074 3.1804 11 8 1.9242 -4.3093 2.7122 12 7 0.3369 -4.0374 4.2382 13 6 0.6150 -5.3500 4.8261 14 1 1.6776 -5.5856 4.7659 15 6 -0.2374 -6.4530 4.1505 16 7 -0.3447 -7.5198 5.1629 17 6 -0.5827 -8.8435 4.9050 18 1 -0.6121 -9.1980 3.8852 19 6 -0.7859 -9.7295 5.9540 20 7 -0.6181 -9.3281 7.1963 21 14 -1.2978 -11.4913 5.6028 22 1 -0.0934 -12.3594 5.5699 23 1 -2.2179 -11.9614 6.6693 24 1 -1.9889 -11.5536 4.2899 25 6 -0.1524 -6.9275 6.4948 26 6 0.1120 -5.4207 6.2922 27 1 -0.8061 -4.8456 6.4130 28 8 1.1186 -4.9581 7.1949 29 6 1.5274 -2.0816 1.2456 30 1 -0.3633 0.6043 0.8312 31 1 -0.3633 0.4176 -0.9390 32 1 -0.3633 -1.0220 0.1079 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7489 -1.2493 37 1 1.6768 -0.2073 -2.1393 38 1 3.1301 -0.7215 -1.2490 39 1 2.3567 0.6885 2.7726 40 1 0.6509 0.5403 2.2494 41 1 0.6518 -0.8196 4.2327 42 1 2.3074 -1.4360 3.9121 43 1 -0.3602 -3.4762 4.6124 44 1 -1.2257 -6.0681 3.8992 45 1 0.2637 -6.8260 3.2571 46 1 -0.7604 -9.9471 7.9294 47 1 0.7027 -7.3911 6.9866 48 1 -1.0502 -7.0688 7.0964 49 1 0.8541 -4.9819 8.1246 50 1 2.3678 -2.7744 1.2034 51 1 0.8517 -2.2634 0.4098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077680768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:08 Heat of formation + Delta-G solvation = -90.910033 kcal Electronic energy + Delta-G solvation = -31991.186547 eV Core-core repulsion = 27648.084439 eV Total energy + Delta-G solvation = -4343.102108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.13521 -40.29893 -39.40336 -37.88790 -35.15484 -34.96752 -34.17883 -31.78147 -29.91988 -29.82735 -28.36356 -27.63099 -27.30471 -26.93653 -24.62272 -23.08117 -22.27270 -20.65073 -20.42763 -20.04158 -19.08497 -18.17838 -17.20256 -16.82991 -16.80091 -15.96497 -15.83704 -15.39670 -15.13948 -14.79219 -14.57131 -14.46973 -14.13759 -14.11191 -13.95984 -13.37276 -13.34343 -13.15105 -12.74412 -12.67764 -12.50769 -12.43391 -12.30373 -12.16025 -12.02815 -11.91973 -11.63421 -11.61085 -11.55916 -11.38485 -11.28768 -11.09891 -10.92508 -10.83441 -10.83065 -10.19682 -9.97952 -9.86238 -9.85489 -9.38463 -8.94750 -8.64487 -8.57518 -6.94023 -5.79961 -3.13625 2.43403 2.94856 3.37833 3.43336 3.45465 3.53395 3.88017 3.98211 4.25465 4.41605 4.51157 4.55324 4.56977 4.62947 4.81886 4.84748 4.94434 5.12122 5.16471 5.26064 5.31751 5.39523 5.40687 5.44579 5.49354 5.51709 5.53869 5.55769 5.60987 5.61398 5.70009 5.77101 5.79534 5.90418 5.95047 6.01211 6.05532 6.07312 6.41650 6.55798 6.60476 6.77298 6.80091 7.29556 7.41054 7.49922 7.70895 8.06082 8.10945 8.16457 9.12126 9.72291 10.35464 11.32303 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.002438 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.179269 B =11479.839092 C =12166.380025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.092 3.908 3 C -0.137 4.137 4 C -0.141 4.141 5 N -0.510 5.510 6 C 0.038 3.962 7 C -0.141 4.141 8 C 0.080 3.920 9 F -0.189 7.189 10 C 0.510 3.490 11 O -0.517 6.517 12 N -0.702 5.702 13 C 0.136 3.864 14 H 0.106 0.894 15 C 0.131 3.869 16 N -0.600 5.600 17 C -0.229 4.229 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.153 3.847 26 C 0.069 3.931 27 H 0.058 0.942 28 O -0.563 6.563 29 C 0.030 3.970 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.400 0.600 44 H 0.025 0.975 45 H 0.051 0.949 46 H 0.253 0.747 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.377 0.623 50 H 0.117 0.883 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 23.463 -9.348 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.003 3.997 3 C -0.195 4.195 4 C -0.198 4.198 5 N -0.234 5.234 6 C -0.089 4.089 7 C -0.179 4.179 8 C 0.057 3.943 9 F -0.169 7.169 10 C 0.292 3.708 11 O -0.392 6.392 12 N -0.352 5.352 13 C 0.031 3.969 14 H 0.124 0.876 15 C 0.003 3.997 16 N -0.327 5.327 17 C -0.357 4.357 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.028 3.972 26 C 0.009 3.991 27 H 0.076 0.924 28 O -0.368 6.368 29 C -0.098 4.098 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.234 0.766 44 H 0.043 0.957 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.224 0.776 50 H 0.135 0.865 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.523 22.835 -10.164 25.242 hybrid contribution -2.111 -0.760 0.726 2.358 sum 1.412 22.075 -9.438 24.049 Atomic orbital electron populations 1.22576 0.96581 1.02864 1.02350 1.21283 0.92706 0.94779 0.90934 1.21853 1.01958 0.93976 1.01699 1.21903 1.02098 1.00243 0.95593 1.64006 1.56683 1.00998 1.01693 1.23153 1.00374 0.96394 0.88984 1.23306 1.03064 0.93710 0.97846 1.22362 0.77764 0.94968 0.99171 1.92903 1.31427 1.96270 1.96325 1.20285 0.82499 0.87049 0.80946 1.90748 1.32019 1.55650 1.60822 1.45882 1.37652 1.19806 1.31818 1.22353 1.01987 0.81341 0.91180 0.87595 1.21844 0.96002 0.88416 0.93426 1.44258 1.84801 1.03297 1.00392 1.19087 1.41542 0.82057 0.93052 0.90122 1.24834 1.01596 0.98620 0.95229 1.69934 1.54775 1.34578 0.97696 0.86065 0.78186 0.84113 0.77223 1.21531 1.21578 1.20532 1.21832 1.01414 0.85545 0.88430 1.23457 0.89290 0.97989 0.88372 0.92385 1.86456 1.42608 1.87868 1.19903 1.23461 1.00361 0.92045 0.93925 0.92218 0.91928 0.91750 0.91670 0.92166 0.92623 0.92372 0.92144 0.91570 0.89246 0.92168 0.88821 0.88133 0.76558 0.95707 0.93110 0.93628 0.92374 0.92918 0.77571 0.86499 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 7.88 37.16 0.29 -1.21 16 2 C 0.09 0.76 0.67 -131.60 -0.09 0.67 16 3 C -0.14 -0.93 8.34 37.16 0.31 -0.62 16 4 C -0.14 -1.11 8.36 37.16 0.31 -0.80 16 5 N -0.51 -4.91 5.00 -215.64 -1.08 -5.99 16 6 C 0.04 0.32 5.14 -2.30 -0.01 0.31 16 7 C -0.14 -1.32 6.32 -24.59 -0.16 -1.47 16 8 C 0.08 0.94 1.42 -89.95 -0.13 0.82 16 9 F -0.19 -2.28 16.28 2.25 0.04 -2.24 16 10 C 0.51 7.75 6.89 -10.98 -0.08 7.68 16 11 O -0.52 -9.64 15.11 5.55 0.08 -9.56 16 12 N -0.70 -10.52 5.19 -51.72 -0.27 -10.78 16 13 C 0.14 2.55 3.09 -65.78 -0.20 2.34 16 14 H 0.11 2.26 7.63 -51.93 -0.40 1.86 16 15 C 0.13 2.80 6.93 -2.51 -0.02 2.79 16 16 N -0.60 -15.34 3.40 -170.04 -0.58 -15.92 16 17 C -0.23 -6.42 10.26 -15.06 -0.15 -6.57 16 18 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 19 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 20 N -0.92 -26.64 10.36 55.49 0.58 -26.06 16 21 Si 0.91 22.04 29.56 -169.99 -5.02 17.02 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.15 3.61 5.15 -3.06 -0.02 3.59 16 26 C 0.07 1.25 3.97 -24.89 -0.10 1.15 16 27 H 0.06 0.93 7.99 -51.93 -0.42 0.51 16 28 O -0.56 -9.45 13.39 -35.23 -0.47 -9.92 16 29 C 0.03 0.35 4.82 -2.84 -0.01 0.33 16 30 H 0.06 0.48 6.31 -51.93 -0.33 0.15 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.61 5.53 -51.93 -0.29 0.33 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.36 6.97 -51.93 -0.36 -0.01 16 36 H 0.06 0.50 6.56 -51.92 -0.34 0.16 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.48 5.48 -51.93 -0.28 0.19 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.00 8.04 -51.93 -0.42 0.58 16 43 H 0.40 5.00 8.46 -40.82 -0.35 4.65 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.06 1.54 7.46 -51.93 -0.39 1.15 16 48 H 0.05 1.34 7.37 -51.93 -0.38 0.95 16 49 H 0.38 4.76 9.12 45.56 0.42 5.17 16 50 H 0.12 1.55 6.72 -51.93 -0.35 1.21 16 51 H 0.08 0.88 4.76 -51.93 -0.25 0.64 16 LS Contribution 392.16 15.07 5.91 5.91 Total: -1.00 -32.22 392.16 -8.44 -40.66 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.48 Total: 8.17 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.14 Total: 8.71 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -1.35 Total: -58.75 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.39 Total: -19.48 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.22 -8.44 -40.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077680768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.249 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds