Wall clock time and date at job start Wed Apr 1 2020 01:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47544 * 2 1 4 4 C 1.53007 * 109.47114 * 120.00075 * 2 1 3 5 5 N 1.46905 * 109.47292 * 239.99892 * 2 1 3 6 6 C 1.48538 * 110.99861 * 307.38388 * 5 2 1 7 7 C 1.54931 * 103.22536 * 159.71680 * 6 5 2 8 8 C 1.54597 * 102.92442 * 322.58255 * 7 6 5 9 9 F 1.39897 * 110.30982 * 263.04367 * 8 7 6 10 10 C 1.50703 * 110.30640 * 140.87003 * 8 7 6 11 11 O 1.21274 * 120.00393 * 254.28846 * 10 8 7 12 12 N 1.34777 * 119.99513 * 74.28849 * 10 8 7 13 13 C 1.46501 * 120.00008 * 179.97438 * 12 10 8 14 14 H 1.09004 * 110.63900 * 36.69240 * 13 12 10 15 15 C 1.54322 * 110.72302 * 273.55125 * 13 12 10 16 16 N 1.47021 * 107.27149 * 219.44327 * 15 13 12 17 17 C 1.36939 * 125.65123 * 178.90307 * 16 15 13 18 18 H 1.08005 * 119.99340 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00212 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99797 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46997 * 90.00092 * 21 19 17 23 23 H 1.48498 * 109.47193 * 210.00122 * 21 19 17 24 24 H 1.48499 * 109.47314 * 330.00588 * 21 19 17 25 25 C 1.47427 * 108.70176 * 358.93711 * 16 15 13 26 26 C 1.54907 * 104.83355 * 24.13056 * 25 16 15 27 27 H 1.08999 * 111.00263 * 204.91783 * 26 25 16 28 28 O 1.42901 * 111.00229 * 81.06462 * 26 25 16 29 29 C 1.47903 * 110.99679 * 64.77704 * 5 2 1 30 30 H 1.08997 * 109.46868 * 67.16362 * 1 2 3 31 31 H 1.08998 * 109.46998 * 307.16897 * 1 2 3 32 32 H 1.08999 * 109.46957 * 187.16852 * 1 2 3 33 33 H 1.08998 * 109.47023 * 60.00073 * 3 2 1 34 34 H 1.09005 * 109.47762 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47236 * 299.99953 * 3 2 1 36 36 H 1.09001 * 109.46822 * 59.99614 * 4 2 1 37 37 H 1.09001 * 109.46900 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.47174 * 299.99756 * 4 2 1 39 39 H 1.08998 * 110.66800 * 278.15274 * 6 5 2 40 40 H 1.09003 * 110.66562 * 41.28205 * 6 5 2 41 41 H 1.09003 * 110.72445 * 204.22368 * 7 6 5 42 42 H 1.09004 * 110.87860 * 81.02056 * 7 6 5 43 43 H 0.97001 * 120.00270 * 359.97438 * 12 10 8 44 44 H 1.09004 * 109.87768 * 338.85401 * 15 13 12 45 45 H 1.08994 * 109.88872 * 99.86730 * 15 13 12 46 46 H 0.97004 * 119.99886 * 180.02562 * 20 19 17 47 47 H 1.09001 * 110.36638 * 142.96893 * 25 16 15 48 48 H 1.09003 * 110.35996 * 265.17910 * 25 16 15 49 49 H 0.96690 * 113.99735 * 67.80889 * 28 26 25 50 50 H 1.09001 * 109.92022 * 333.50676 * 29 5 2 51 51 H 1.08996 * 109.91726 * 94.60998 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 2.0197 -0.6925 -1.1994 6 6 1.4034 -2.0380 -1.3262 7 6 1.5951 -2.3759 -2.8260 8 6 1.3756 -1.0114 -3.5186 9 9 0.0597 -0.9083 -3.9822 10 6 2.3476 -0.8406 -4.6576 11 8 3.2922 -0.0889 -4.5412 12 7 2.1671 -1.5233 -5.8055 13 6 3.1116 -1.3569 -6.9130 14 1 4.1279 -1.2390 -6.5368 15 6 2.7130 -0.1549 -7.7948 16 7 2.9539 -0.5403 -9.1930 17 6 2.7072 0.2411 -10.2902 18 1 2.3000 1.2337 -10.1656 19 6 2.9804 -0.2425 -11.5623 20 7 3.4761 -1.4522 -11.7140 21 14 2.6431 0.8232 -13.0590 22 1 3.8503 1.6281 -13.3757 23 1 2.3075 -0.0427 -14.2177 24 1 1.5037 1.7316 -12.7733 25 6 3.5044 -1.9077 -9.2183 26 6 3.0216 -2.5541 -7.8959 27 1 3.6868 -3.3616 -7.5901 28 8 1.6756 -3.0191 -8.0147 29 6 1.6416 0.0414 -2.4266 30 1 -0.3633 0.3988 -0.9471 31 1 -0.3633 0.6209 0.8189 32 1 -0.3633 -1.0196 0.1282 33 1 1.6768 1.9562 0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6766 -1.7489 1.2493 37 1 3.1300 -0.7217 1.2490 38 1 1.6767 -0.2075 2.1393 39 1 1.9253 -2.7609 -0.6992 40 1 0.3439 -2.0013 -1.0724 41 1 0.8507 -3.1004 -3.1564 42 1 2.6025 -2.7469 -3.0149 43 1 1.4118 -2.1248 -5.8985 44 1 1.6576 0.0766 -7.6507 45 1 3.3211 0.7121 -7.5368 46 1 3.6674 -1.7900 -12.6030 47 1 3.1138 -2.4581 -10.0742 48 1 4.5935 -1.8775 -9.2523 49 1 1.5697 -3.7668 -8.6185 50 1 0.7393 0.6258 -2.2467 51 1 2.4554 0.6993 -2.7314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083781791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:12 Heat of formation + Delta-G solvation = -86.557906 kcal Electronic energy + Delta-G solvation = -32072.219930 eV Core-core repulsion = 27729.306544 eV Total energy + Delta-G solvation = -4342.913386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.04555 -40.31034 -39.34864 -37.85448 -35.02536 -34.73974 -34.06343 -31.72874 -29.85570 -29.71504 -28.46296 -27.71953 -27.28641 -26.88918 -24.63730 -23.10934 -22.26249 -20.66106 -20.16304 -19.73570 -19.10320 -18.13173 -17.18014 -17.04359 -16.65527 -15.75235 -15.59631 -15.22199 -14.99734 -14.78277 -14.59338 -14.48947 -14.30393 -14.19153 -13.84834 -13.55695 -13.25097 -13.00706 -12.96755 -12.73356 -12.55162 -12.41344 -12.21528 -12.07969 -11.89717 -11.80838 -11.63061 -11.43754 -11.37296 -11.32032 -11.09645 -11.04682 -10.88601 -10.86539 -10.63836 -10.36944 -10.06408 -9.84760 -9.69664 -9.25147 -8.79295 -8.68922 -8.63664 -6.85739 -5.69999 -3.09674 2.50808 3.06442 3.39777 3.44759 3.46773 3.54223 3.94878 4.01831 4.32407 4.46127 4.52467 4.54511 4.60020 4.73043 4.83730 4.88253 4.94440 5.18725 5.23697 5.28775 5.31387 5.34581 5.41391 5.45892 5.47600 5.50089 5.54992 5.55728 5.59430 5.69952 5.72311 5.75679 5.84893 5.89463 5.97079 6.01242 6.04475 6.24811 6.46902 6.56211 6.68685 6.75792 6.90612 7.23981 7.54847 7.64646 7.73139 8.08235 8.27259 8.30489 9.17740 9.78593 10.41705 11.35336 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.002429 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.828865 B =11522.354397 C =11947.249029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.091 3.909 3 C -0.143 4.143 4 C -0.134 4.134 5 N -0.496 5.496 6 C 0.028 3.972 7 C -0.137 4.137 8 C 0.093 3.907 9 F -0.190 7.190 10 C 0.504 3.496 11 O -0.521 6.521 12 N -0.695 5.695 13 C 0.141 3.859 14 H 0.102 0.898 15 C 0.131 3.869 16 N -0.596 5.596 17 C -0.215 4.215 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.928 5.928 21 Si 0.917 3.083 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.127 3.873 26 C 0.068 3.932 27 H 0.060 0.940 28 O -0.561 6.561 29 C 0.021 3.979 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.411 0.589 44 H 0.030 0.970 45 H 0.029 0.971 46 H 0.252 0.748 47 H 0.116 0.884 48 H 0.023 0.977 49 H 0.380 0.620 50 H 0.069 0.931 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.178 -4.385 24.205 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.002 3.998 3 C -0.200 4.200 4 C -0.192 4.192 5 N -0.220 5.220 6 C -0.100 4.100 7 C -0.176 4.176 8 C 0.071 3.929 9 F -0.170 7.170 10 C 0.287 3.713 11 O -0.397 6.397 12 N -0.346 5.346 13 C 0.036 3.964 14 H 0.120 0.880 15 C 0.005 3.995 16 N -0.323 5.323 17 C -0.344 4.344 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.748 3.252 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.001 3.999 26 C 0.007 3.993 27 H 0.077 0.923 28 O -0.367 6.367 29 C -0.108 4.108 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.247 0.753 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.133 0.867 48 H 0.041 0.959 49 H 0.227 0.773 50 H 0.087 0.913 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.049 -3.375 24.516 25.076 hybrid contribution -1.408 -0.082 -1.418 2.000 sum -5.456 -3.458 23.098 23.984 Atomic orbital electron populations 1.22553 0.96847 1.02361 1.02678 1.21255 0.92588 0.94967 0.91034 1.21918 1.02286 0.93935 1.01908 1.21801 1.02049 0.99840 0.95496 1.65154 1.54078 1.01974 1.00832 1.23392 0.98946 0.92042 0.95592 1.23106 1.04771 0.94450 0.95224 1.21935 0.77783 0.99280 0.93913 1.92929 1.36678 1.97221 1.90186 1.20378 0.86566 0.80906 0.83477 1.90719 1.31372 1.36601 1.81016 1.45798 1.30223 1.45421 1.13117 1.22226 0.93137 0.96157 0.84857 0.88048 1.21582 0.98205 0.94224 0.85537 1.44283 1.74831 1.13567 0.99573 1.19105 1.35127 0.96393 0.83755 0.90400 1.24756 1.01442 0.97159 0.97413 1.69715 1.50571 1.16255 1.21167 0.86024 0.77890 0.79058 0.82266 1.21610 1.21650 1.20691 1.22606 0.96036 0.86860 0.94372 1.23570 0.83631 0.94132 0.97922 0.92261 1.86248 1.27454 1.54305 1.68647 1.23499 1.03230 0.95811 0.88228 0.92047 0.91747 0.91979 0.92115 0.91441 0.92373 0.92690 0.91611 0.92220 0.89090 0.92194 0.88729 0.88547 0.75315 0.95219 0.95324 0.93722 0.86662 0.95900 0.77253 0.91292 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 7.59 37.16 0.28 -1.12 16 2 C 0.09 0.75 0.69 -131.60 -0.09 0.66 16 3 C -0.14 -1.18 8.27 37.15 0.31 -0.87 16 4 C -0.13 -0.93 8.48 37.16 0.32 -0.62 16 5 N -0.50 -5.00 5.09 -214.85 -1.09 -6.09 16 6 C 0.03 0.24 5.48 -1.90 -0.01 0.23 16 7 C -0.14 -1.33 6.39 -24.87 -0.16 -1.49 16 8 C 0.09 1.17 1.53 -90.41 -0.14 1.03 16 9 F -0.19 -2.56 16.75 2.25 0.04 -2.52 16 10 C 0.50 7.97 6.73 -10.98 -0.07 7.89 16 11 O -0.52 -9.76 15.03 5.56 0.08 -9.68 16 12 N -0.69 -11.11 5.06 -52.03 -0.26 -11.38 16 13 C 0.14 2.63 3.12 -66.10 -0.21 2.42 16 14 H 0.10 1.90 7.69 -51.93 -0.40 1.50 16 15 C 0.13 2.98 6.99 -3.07 -0.02 2.95 16 16 N -0.60 -15.49 3.39 -170.07 -0.58 -16.07 16 17 C -0.22 -6.11 10.27 -15.06 -0.15 -6.26 16 18 H 0.08 2.17 7.83 -52.48 -0.41 1.75 16 19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 20 N -0.93 -26.55 10.09 55.49 0.56 -25.99 16 21 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.13 2.96 5.62 -2.53 -0.01 2.95 16 26 C 0.07 1.23 4.28 -24.58 -0.11 1.12 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 O -0.56 -9.51 12.23 -35.23 -0.43 -9.94 16 29 C 0.02 0.24 4.54 -2.75 -0.01 0.23 16 30 H 0.06 0.53 6.05 -51.93 -0.31 0.22 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.44 6.37 -51.93 -0.33 0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.52 6.77 -51.93 -0.35 0.16 16 36 H 0.05 0.36 7.15 -51.93 -0.37 -0.02 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.67 7.72 -51.93 -0.40 0.27 16 40 H 0.06 0.48 5.55 -51.93 -0.29 0.19 16 41 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 42 H 0.10 0.97 7.86 -51.93 -0.41 0.56 16 43 H 0.41 6.14 7.51 -40.82 -0.31 5.83 16 44 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.12 2.97 5.87 -51.93 -0.31 2.66 16 48 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.38 5.14 9.12 45.56 0.42 5.56 16 50 H 0.07 0.77 5.17 -51.93 -0.27 0.50 16 51 H 0.12 1.63 6.50 -51.93 -0.34 1.30 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -32.04 390.76 -8.43 -40.47 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.43 Total: 9.42 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -0.18 Total: 8.68 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -1.37 Total: -59.52 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.35 Total: -19.61 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.04 -8.43 -40.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083781791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.092 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds