Wall clock time and date at job start Wed Apr 1 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46857 * 239.99932 * 2 1 3 5 5 N 1.46899 * 109.46977 * 120.00579 * 2 1 3 6 6 C 1.47897 * 111.00388 * 62.30380 * 5 2 1 7 7 C 1.53989 * 107.06049 * 145.84687 * 6 5 2 8 8 C 1.54599 * 105.13834 * 358.77172 * 7 6 5 9 9 F 1.39897 * 110.72397 * 96.58164 * 8 7 6 10 10 C 1.50709 * 110.72230 * 219.68677 * 8 7 6 11 11 O 1.21279 * 119.99602 * 113.54905 * 10 8 7 12 12 N 1.34773 * 120.00190 * 293.54621 * 10 8 7 13 13 C 1.46500 * 120.00069 * 180.02562 * 12 10 8 14 14 H 1.09004 * 110.88425 * 31.11872 * 13 12 10 15 15 C 1.55123 * 111.22705 * 267.20724 * 13 12 10 16 16 N 1.47429 * 104.72144 * 279.17983 * 15 13 12 17 17 C 1.36941 * 125.64715 * 155.81871 * 16 15 13 18 18 H 1.07991 * 120.00226 * 350.53867 * 17 16 15 19 19 C 1.38816 * 119.99560 * 170.53913 * 17 16 15 20 20 N 1.31619 * 119.99497 * 152.44407 * 19 17 16 21 21 Si 1.86801 * 120.00223 * 332.44732 * 19 17 16 22 22 H 1.48490 * 109.47169 * 85.20965 * 21 19 17 23 23 H 1.48506 * 109.46786 * 325.21088 * 21 19 17 24 24 H 1.48502 * 109.47032 * 205.21522 * 21 19 17 25 25 C 1.47024 * 108.70108 * 335.54975 * 16 15 13 26 26 C 1.54323 * 107.26982 * 1.28844 * 25 16 15 27 27 H 1.09000 * 110.72462 * 263.83010 * 26 25 16 28 28 O 1.42902 * 110.71911 * 140.55639 * 26 25 16 29 29 C 1.48536 * 110.99852 * 179.69975 * 5 2 1 30 30 H 1.09001 * 109.46604 * 299.99731 * 1 2 3 31 31 H 1.08993 * 109.47115 * 59.99840 * 1 2 3 32 32 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47331 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47370 * 300.00593 * 3 2 1 35 35 H 1.09008 * 109.47201 * 60.00229 * 3 2 1 36 36 H 1.08994 * 109.47162 * 306.24882 * 4 2 1 37 37 H 1.09000 * 109.46751 * 66.25022 * 4 2 1 38 38 H 1.08996 * 109.46920 * 186.24570 * 4 2 1 39 39 H 1.09000 * 109.91816 * 26.48735 * 6 5 2 40 40 H 1.09003 * 110.07770 * 265.28562 * 6 5 2 41 41 H 1.09000 * 110.30685 * 239.86038 * 7 6 5 42 42 H 1.08994 * 110.39976 * 117.73124 * 7 6 5 43 43 H 0.96999 * 119.99539 * 359.97438 * 12 10 8 44 44 H 1.08995 * 110.50232 * 160.33508 * 15 13 12 45 45 H 1.09005 * 110.34505 * 37.93842 * 15 13 12 46 46 H 0.96998 * 119.99930 * 5.03970 * 20 19 17 47 47 H 1.08996 * 109.88031 * 120.70874 * 25 16 15 48 48 H 1.09006 * 109.88118 * 241.87497 * 25 16 15 49 49 H 0.96695 * 113.99999 * 61.44943 * 28 26 25 50 50 H 1.09006 * 110.66568 * 81.83945 * 29 5 2 51 51 H 1.08994 * 110.66771 * 318.71580 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0197 -0.6926 1.1994 6 6 1.5913 -2.1082 1.2060 7 6 2.7208 -2.9189 1.8681 8 6 3.8185 -1.8829 2.2029 9 9 3.7137 -1.4631 3.5332 10 6 5.1880 -2.4504 1.9311 11 8 5.8728 -1.9839 1.0455 12 7 5.6516 -3.4762 2.6721 13 6 6.9831 -4.0274 2.4083 14 1 7.6565 -3.2553 2.0358 15 6 6.9109 -5.2221 1.4214 16 7 6.5156 -6.3726 2.2542 17 6 5.8853 -7.5028 1.8064 18 1 5.5001 -7.5429 0.7983 19 6 5.7414 -8.5970 2.6484 20 7 4.7348 -9.4283 2.4810 21 14 6.9764 -8.8896 4.0191 22 1 6.5836 -8.1029 5.2156 23 1 8.3261 -8.4645 3.5683 24 1 7.0015 -10.3341 4.3627 25 6 6.9160 -6.1082 3.6440 26 6 7.5643 -4.7081 3.6756 27 1 8.6497 -4.7840 3.6091 28 8 7.1770 -3.9981 4.8537 29 6 3.5045 -0.7187 1.2301 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.5882 -1.7115 -1.3069 37 1 1.7708 -0.1469 -2.1357 38 1 3.1242 -0.8191 -1.1951 39 1 1.4359 -2.4539 0.1841 40 1 0.6706 -2.2178 1.7791 41 1 3.1056 -3.6672 1.1752 42 1 2.3615 -3.3971 2.7792 43 1 5.1040 -3.8490 3.3807 44 1 7.8850 -5.4003 0.9659 45 1 6.1607 -5.0343 0.6533 46 1 4.1358 -9.3187 1.7260 47 1 6.0397 -6.1258 4.2919 48 1 7.6366 -6.8579 3.9711 49 1 7.4495 -4.4248 5.6775 50 1 3.8979 0.2218 1.6159 51 1 3.9062 -0.9269 0.2384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083781792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:15 Heat of formation + Delta-G solvation = -111.122599 kcal Electronic energy + Delta-G solvation = -32682.577934 eV Core-core repulsion = 28338.599344 eV Total energy + Delta-G solvation = -4343.978591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -48.98588 -41.47700 -40.58828 -39.46898 -36.80559 -35.84792 -35.50271 -33.97336 -31.17850 -30.62698 -30.06114 -29.33923 -28.35018 -27.87247 -25.96386 -24.37090 -23.14087 -22.66707 -21.73912 -21.16619 -20.06918 -19.66088 -18.92164 -18.39400 -17.83855 -17.48508 -16.97317 -16.90687 -16.16904 -16.10566 -15.93791 -15.59276 -15.55174 -15.41959 -15.12976 -14.91370 -14.81005 -14.47650 -14.42760 -13.90872 -13.88174 -13.71257 -13.42633 -13.20156 -13.12253 -12.96306 -12.90155 -12.82675 -12.60871 -12.50136 -12.38478 -12.28253 -12.17740 -12.03336 -11.92051 -11.68917 -11.55790 -11.35776 -10.97685 -10.94749 -10.63991 -10.25090 -9.45601 -9.20814 -8.66420 -5.44735 1.19412 1.37607 1.51932 1.69996 1.76095 2.50862 2.74794 2.89055 2.98413 3.04261 3.11750 3.28236 3.33576 3.55790 3.60848 3.67612 3.84157 3.96472 3.99283 4.07054 4.11012 4.19599 4.35381 4.38798 4.43823 4.52344 4.56752 4.59274 4.64132 4.71425 4.73800 4.77162 4.78284 4.86753 4.87899 4.93233 4.94505 4.97434 5.01088 5.20321 5.28851 5.31065 5.41099 5.52591 5.73740 6.00139 6.05737 6.26464 6.76410 6.79254 6.89086 7.41525 8.06462 8.82216 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.003208 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.295174 B = 8726.659698 C = 9465.526354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.088 3.912 3 C -0.137 4.137 4 C -0.187 4.187 5 N -0.504 5.504 6 C 0.035 3.965 7 C -0.147 4.147 8 C 0.105 3.895 9 F -0.185 7.185 10 C 0.507 3.493 11 O -0.556 6.556 12 N -0.680 5.680 13 C 0.143 3.857 14 H 0.114 0.886 15 C 0.123 3.877 16 N -0.619 5.619 17 C -0.321 4.321 18 H 0.041 0.959 19 C -0.074 4.074 20 N -0.950 5.950 21 Si 1.110 2.890 22 H -0.264 1.264 23 H -0.272 1.272 24 H -0.310 1.310 25 C 0.077 3.923 26 C 0.104 3.896 27 H 0.111 0.889 28 O -0.559 6.559 29 C 0.036 3.964 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.410 0.590 44 H 0.051 0.949 45 H 0.033 0.967 46 H 0.248 0.752 47 H 0.040 0.960 48 H 0.037 0.963 49 H 0.401 0.599 50 H 0.097 0.903 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 20.469 -0.367 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.001 4.001 3 C -0.195 4.195 4 C -0.245 4.245 5 N -0.228 5.228 6 C -0.092 4.092 7 C -0.185 4.185 8 C 0.083 3.917 9 F -0.165 7.165 10 C 0.291 3.709 11 O -0.435 6.435 12 N -0.328 5.328 13 C 0.036 3.964 14 H 0.132 0.868 15 C -0.003 4.003 16 N -0.347 5.347 17 C -0.450 4.450 18 H 0.059 0.941 19 C -0.268 4.268 20 N -0.593 5.593 21 Si 0.937 3.063 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.239 1.239 25 C -0.048 4.048 26 C 0.044 3.956 27 H 0.129 0.871 28 O -0.367 6.367 29 C -0.092 4.092 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.118 0.882 43 H 0.245 0.755 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.252 0.748 50 H 0.115 0.885 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.817 20.480 0.297 20.675 hybrid contribution -0.181 -0.809 -1.632 1.830 sum -2.999 19.672 -1.335 19.943 Atomic orbital electron populations 1.21818 0.92043 1.02348 1.02860 1.21377 0.96709 0.94883 0.87129 1.21860 1.00749 0.93927 1.02958 1.22554 1.01076 1.01463 0.99382 1.65143 1.06212 1.13041 1.38450 1.22965 0.98029 0.87266 1.00971 1.23051 0.94736 0.97115 1.03612 1.21871 0.92819 0.97245 0.79747 1.92909 1.96877 1.91383 1.35345 1.20796 0.88050 0.80085 0.81976 1.90677 1.58500 1.61507 1.32816 1.45536 1.18198 1.33216 1.35869 1.22258 0.84345 0.95036 0.94719 0.86785 1.22161 0.98384 0.86283 0.93519 1.44650 1.69887 1.16926 1.03269 1.19832 1.32312 0.92940 0.99872 0.94061 1.27058 1.00634 0.93677 1.05440 1.71042 1.13860 1.45246 1.29145 0.83229 0.74446 0.74510 0.74117 1.19002 1.19843 1.23895 1.22610 0.97899 0.96893 0.87395 1.22985 0.98922 0.88459 0.85266 0.87131 1.86459 1.82642 1.51271 1.16298 1.23568 0.90231 0.97049 0.98343 0.91848 0.90615 0.92620 0.93277 0.90457 0.91800 0.92229 0.90203 0.93229 0.91545 0.88365 0.90435 0.88209 0.75455 0.93136 0.94857 0.94257 0.94223 0.94589 0.74810 0.88456 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.41 71.98 0.61 -1.29 16 2 C 0.09 1.53 0.70 3.53 0.00 1.53 16 3 C -0.14 -2.14 8.34 71.98 0.60 -1.54 16 4 C -0.19 -3.27 7.83 71.98 0.56 -2.71 16 5 N -0.50 -10.82 5.09 -833.68 -4.24 -15.06 16 6 C 0.04 0.74 5.21 86.45 0.45 1.19 16 7 C -0.15 -3.71 6.31 31.47 0.20 -3.51 16 8 C 0.11 2.92 1.53 -10.33 -0.02 2.90 16 9 F -0.18 -5.44 16.96 44.97 0.76 -4.68 16 10 C 0.51 16.33 6.78 87.66 0.59 16.92 16 11 O -0.56 -20.11 15.36 -3.03 -0.05 -20.15 16 12 N -0.68 -21.86 4.82 -435.60 -2.10 -23.96 16 13 C 0.14 4.55 3.31 46.46 0.15 4.70 16 14 H 0.11 3.44 7.54 -2.38 -0.02 3.42 16 15 C 0.12 4.74 6.95 86.93 0.60 5.35 16 16 N -0.62 -28.25 3.30 -691.54 -2.28 -30.53 16 17 C -0.32 -18.01 10.43 84.03 0.88 -17.13 16 18 H 0.04 2.55 8.06 -2.92 -0.02 2.52 16 19 C -0.07 -4.22 5.43 84.86 0.46 -3.76 16 20 N -0.95 -59.31 13.70 21.65 0.30 -59.02 16 21 Si 1.11 50.84 24.66 68.60 1.69 52.53 16 22 H -0.26 -10.74 6.73 99.48 0.67 -10.07 16 23 H -0.27 -11.38 6.69 99.48 0.67 -10.71 16 24 H -0.31 -14.75 7.11 99.48 0.71 -14.05 16 25 C 0.08 2.90 4.69 86.73 0.41 3.31 16 26 C 0.10 2.94 4.12 31.78 0.13 3.08 16 27 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 28 O -0.56 -13.75 12.67 -148.98 -1.89 -15.64 16 29 C 0.04 0.90 4.14 86.65 0.36 1.26 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.80 7.20 -2.39 -0.02 0.79 16 33 H 0.05 0.84 6.94 -2.39 -0.02 0.83 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.06 1.07 6.17 -2.39 -0.01 1.05 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.03 5.80 -2.39 -0.01 1.02 16 39 H 0.07 1.33 5.36 -2.39 -0.01 1.32 16 40 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.08 2.18 7.84 -2.39 -0.02 2.16 16 42 H 0.10 2.45 8.12 -2.39 -0.02 2.43 16 43 H 0.41 13.24 8.39 -92.71 -0.78 12.46 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.25 15.66 8.73 -92.71 -0.81 14.85 16 47 H 0.04 1.59 7.67 -2.39 -0.02 1.58 16 48 H 0.04 1.38 3.81 -2.38 -0.01 1.37 16 49 H 0.40 6.32 9.11 -74.06 -0.67 5.64 16 50 H 0.10 2.40 7.66 -2.38 -0.02 2.38 16 51 H 0.08 2.05 4.89 -2.39 -0.01 2.04 16 Total: -1.00 -70.42 387.81 -2.42 -72.84 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.61 Total: 33.36 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.99 Total: 10.30 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -8.32 Total: -128.56 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.93 Total: -35.79 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.76 Total: -4.68 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 1.69 Total: 52.53 kcal Total: -70.42 -2.42 -72.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083781792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.282 kcal (2) G-P(sol) polarization free energy of solvation -70.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds