Wall clock time and date at job start Wed Apr 1 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.86925 * 2 1 4 4 C 1.54457 * 109.87569 * 238.99010 * 2 1 3 5 5 C 1.54391 * 102.87390 * 218.92286 * 4 2 1 6 6 C 1.54124 * 102.47454 * 34.64511 * 5 4 2 7 7 N 1.47091 * 110.00133 * 121.08503 * 2 1 3 8 8 C 1.34776 * 125.62282 * 298.49735 * 7 2 1 9 9 O 1.21777 * 120.00495 * 0.02562 * 8 7 2 10 10 C 1.41525 * 119.99420 * 180.02562 * 8 7 2 11 11 C 1.35614 * 119.99677 * 188.60140 * 10 8 7 12 12 C 1.41672 * 120.00117 * 32.43324 * 11 10 8 13 13 C 1.38284 * 126.25920 * 186.36239 * 12 11 10 14 14 C 1.39783 * 107.07995 * 179.88057 * 13 12 11 15 15 C 1.35503 * 107.91194 * 0.38174 * 14 13 12 16 16 N 1.35758 * 108.90660 * 359.75910 * 15 14 13 17 17 H 0.96999 * 125.68856 * 179.97438 * 16 15 14 18 18 C 1.52105 * 110.50935 * 152.62265 * 5 4 2 19 19 C 1.53331 * 109.49748 * 182.57421 * 18 5 4 20 20 N 1.46941 * 108.69291 * 306.71928 * 19 18 5 21 21 C 1.36929 * 120.57507 * 234.38680 * 20 19 18 22 22 H 1.08003 * 120.00166 * 150.37559 * 21 20 19 23 23 C 1.38815 * 120.00291 * 330.37137 * 21 20 19 24 24 N 1.31625 * 120.00337 * 166.21924 * 23 21 20 25 25 Si 1.86803 * 120.00042 * 346.22670 * 23 21 20 26 26 H 1.48498 * 109.47343 * 95.38835 * 25 23 21 27 27 H 1.48496 * 109.46972 * 215.38881 * 25 23 21 28 28 H 1.48500 * 109.46629 * 335.38851 * 25 23 21 29 29 C 1.46935 * 118.84359 * 54.41413 * 20 19 18 30 30 C 1.52102 * 110.51541 * 276.67354 * 5 4 2 31 31 H 1.09000 * 109.47264 * 181.01209 * 1 2 3 32 32 H 1.09005 * 109.46843 * 301.00682 * 1 2 3 33 33 H 1.08994 * 109.47474 * 61.00612 * 1 2 3 34 34 H 1.09001 * 110.72936 * 100.57966 * 4 2 1 35 35 H 1.09002 * 110.88825 * 337.34160 * 4 2 1 36 36 H 1.09000 * 110.37742 * 82.74596 * 6 5 4 37 37 H 1.08995 * 110.37935 * 205.09647 * 6 5 4 38 38 H 1.07997 * 120.00122 * 8.59992 * 10 8 7 39 39 H 1.07998 * 119.99616 * 212.43273 * 11 10 8 40 40 H 1.08008 * 126.46003 * 0.02562 * 13 12 11 41 41 H 1.07999 * 126.04649 * 180.10745 * 14 13 12 42 42 H 1.07998 * 125.54976 * 179.76068 * 15 14 13 43 43 H 1.09001 * 109.46570 * 62.56083 * 18 5 4 44 44 H 1.08999 * 109.46242 * 302.57983 * 18 5 4 45 45 H 1.08998 * 109.59668 * 66.48016 * 19 18 5 46 46 H 1.09000 * 109.59791 * 186.95816 * 19 18 5 47 47 H 0.96989 * 120.00357 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.60474 * 65.33674 * 29 20 19 49 49 H 1.09000 * 109.59728 * 185.81962 * 29 20 19 50 50 H 1.08998 * 109.46968 * 57.41622 * 30 5 4 51 51 H 1.09000 * 109.46367 * 297.42410 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0250 0.0000 4 6 2.0551 -0.7483 -1.2450 5 6 3.2733 -1.5204 -0.6939 6 6 2.8220 -1.8776 0.7359 7 7 2.0331 -0.7136 1.1837 8 6 1.8104 -0.3622 2.4657 9 8 1.1408 0.6227 2.7196 10 6 2.3549 -1.1380 3.5167 11 6 1.9913 -0.8918 4.7998 12 6 0.6846 -0.4269 5.0890 13 6 0.2163 -0.0195 6.3247 14 6 -1.1184 0.3590 6.1535 15 6 -1.4403 0.1736 4.8504 16 7 -0.3531 -0.3038 4.1923 17 1 -0.3139 -0.5222 3.2481 18 6 3.5197 -2.7799 -1.5102 19 6 4.6924 -3.5607 -0.9050 20 7 5.8452 -2.6580 -0.7809 21 6 7.0525 -2.9898 -1.3353 22 1 7.7234 -2.2136 -1.6727 23 6 7.4143 -4.3238 -1.4636 24 7 8.4313 -4.6593 -2.2287 25 14 6.4574 -5.6430 -0.5504 26 1 5.4212 -6.2137 -1.4480 27 1 7.3858 -6.7188 -0.1193 28 1 5.8047 -5.0450 0.6419 29 6 5.6800 -1.3934 -0.0512 30 6 4.5020 -0.6244 -0.6613 31 1 -0.3634 -1.0275 0.0182 32 1 -0.3633 0.5294 0.8809 33 1 -0.3634 0.4981 -0.8988 34 1 2.3623 -0.0436 -2.0177 35 1 1.3035 -1.4375 -1.6299 36 1 2.2026 -2.7745 0.7254 37 1 3.6876 -2.0208 1.3825 38 1 3.0598 -1.9261 3.2970 39 1 2.6978 -1.0500 5.6011 40 1 0.7769 0.0043 7.2476 41 1 -1.7779 0.7291 6.9245 42 1 -2.4048 0.3731 4.4074 43 1 3.7576 -2.5059 -2.5380 44 1 2.6245 -3.4016 -1.4979 45 1 4.4131 -3.9346 0.0800 46 1 4.9504 -4.3959 -1.5561 47 1 8.6839 -5.5915 -2.3186 48 1 5.4762 -1.6012 0.9992 49 1 6.5894 -0.7991 -0.1391 50 1 4.2922 0.2580 -0.0568 51 1 4.7549 -0.3178 -1.6762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086919014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:21 Heat of formation + Delta-G solvation = 80.340113 kcal Electronic energy + Delta-G solvation = -31439.188949 eV Core-core repulsion = 27534.282029 eV Total energy + Delta-G solvation = -3904.906920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.49005 -40.60248 -38.75523 -36.40460 -33.92604 -33.20250 -32.02069 -31.21095 -31.02653 -30.57474 -28.38322 -27.52758 -25.99275 -24.54233 -23.85789 -23.04637 -21.59734 -21.06206 -20.46996 -20.28378 -19.19475 -18.48325 -17.71908 -16.98668 -16.48344 -16.01611 -15.37083 -14.87840 -14.57952 -14.41338 -14.34186 -14.22452 -13.97947 -13.78587 -13.72247 -13.49600 -13.41481 -12.94099 -12.85537 -12.61771 -12.45245 -12.42003 -12.20131 -12.10298 -11.96524 -11.86424 -11.67062 -11.18929 -10.99971 -10.94617 -10.65298 -10.49114 -10.10529 -10.02419 -9.89720 -9.78766 -9.63358 -9.43768 -9.00135 -8.69756 -8.65541 -7.64332 -6.97622 -5.96618 -3.38353 0.37821 2.48357 2.84778 3.00216 3.25919 3.26223 3.41180 3.41338 3.44715 4.43405 4.47363 4.49496 4.79786 4.87046 4.90334 4.92823 5.01974 5.06120 5.19938 5.22042 5.22566 5.26245 5.36407 5.40992 5.41709 5.51359 5.59993 5.67430 5.73013 5.77986 5.79714 5.83759 5.89024 5.92417 5.98306 6.09079 6.12693 6.14323 6.17859 6.26477 6.34233 6.40097 6.42001 6.55331 6.60893 6.62908 6.81130 6.87160 6.98196 7.45407 7.51829 7.94772 8.12942 8.30449 8.90097 9.67767 10.05316 11.19506 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.003038 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.294492 B = 9214.241751 C =10090.625983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 H 0.074 0.926 4 C -0.122 4.122 5 C -0.056 4.056 6 C 0.105 3.895 7 N -0.605 5.605 8 C 0.561 3.439 9 O -0.559 6.559 10 C -0.283 4.283 11 C 0.044 3.956 12 C 0.008 3.992 13 C -0.147 4.147 14 C -0.217 4.217 15 C 0.017 3.983 16 N -0.509 5.509 17 H 0.418 0.582 18 C -0.120 4.120 19 C 0.124 3.876 20 N -0.605 5.605 21 C -0.259 4.259 22 H 0.085 0.915 23 C 0.021 3.979 24 N -0.914 5.914 25 Si 0.890 3.110 26 H -0.290 1.290 27 H -0.305 1.305 28 H -0.266 1.266 29 C 0.150 3.850 30 C -0.119 4.119 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.162 0.838 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.029 0.971 46 H 0.070 0.930 47 H 0.262 0.738 48 H 0.022 0.978 49 H 0.064 0.936 50 H 0.054 0.946 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.401 7.784 10.640 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.092 0.908 4 C -0.160 4.160 5 C -0.057 4.057 6 C -0.017 4.017 7 N -0.337 5.337 8 C 0.357 3.643 9 O -0.443 6.443 10 C -0.304 4.304 11 C 0.023 3.977 12 C -0.103 4.103 13 C -0.173 4.173 14 C -0.241 4.241 15 C -0.121 4.121 16 N -0.105 5.105 17 H 0.261 0.739 18 C -0.159 4.159 19 C -0.002 4.002 20 N -0.329 5.329 21 C -0.387 4.387 22 H 0.103 0.897 23 C -0.178 4.178 24 N -0.558 5.558 25 Si 0.721 3.279 26 H -0.218 1.218 27 H -0.234 1.234 28 H -0.191 1.191 29 C 0.024 3.976 30 C -0.159 4.159 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.154 0.846 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.179 0.821 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.040 0.960 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.585 8.133 10.560 23.690 hybrid contribution -0.308 -0.965 -0.143 1.023 sum -19.893 7.169 10.417 23.572 Atomic orbital electron populations 1.22130 0.95225 1.01905 1.02589 1.21540 0.93939 0.96486 0.84795 0.90818 1.22810 0.97636 0.99365 0.96150 1.20972 0.94717 0.96543 0.93459 1.22518 0.95078 0.87762 0.96375 1.48657 1.51755 1.28318 1.04940 1.16825 0.80163 0.85589 0.81757 1.90819 1.41242 1.28710 1.83498 1.21947 1.10566 1.04820 0.93099 1.20828 0.91289 0.88778 0.96800 1.18254 0.89807 1.12519 0.89727 1.21474 0.95881 1.03670 0.96244 1.20787 0.97009 1.10481 0.95870 1.22064 0.92752 1.03667 0.93602 1.42687 1.09128 1.47487 1.11242 0.73914 1.21889 0.98947 0.95129 0.99966 1.21461 0.87415 0.93556 0.97749 1.44312 1.07274 1.19025 1.62312 1.18939 0.93645 0.92723 1.33427 0.89739 1.25346 0.96370 0.97383 0.98652 1.69768 1.29260 1.17464 1.39282 0.86880 0.78341 0.81607 0.81043 1.21847 1.23382 1.19109 1.20960 0.95937 0.87560 0.93136 1.21836 0.95055 0.97115 1.01849 0.92704 0.91776 0.91663 0.90024 0.90573 0.91484 0.89632 0.84567 0.83553 0.84213 0.84626 0.82068 0.91070 0.92574 0.95334 0.91231 0.92763 0.96036 0.91762 0.92695 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.10 37.16 0.34 -1.30 16 2 C 0.14 1.58 3.09 -66.84 -0.21 1.37 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.12 -1.37 5.42 -25.24 -0.14 -1.50 16 5 C -0.06 -0.77 0.54 -154.11 -0.08 -0.85 16 6 C 0.11 1.37 4.53 -2.87 -0.01 1.35 16 7 N -0.60 -7.63 3.06 -166.67 -0.51 -8.14 16 8 C 0.56 7.56 6.15 -15.01 -0.09 7.46 16 9 O -0.56 -8.59 11.77 5.12 0.06 -8.53 16 10 C -0.28 -3.36 9.24 -39.27 -0.36 -3.73 16 11 C 0.04 0.47 9.76 -39.21 -0.38 0.09 16 12 C 0.01 0.10 5.96 -83.91 -0.50 -0.40 16 13 C -0.15 -1.58 10.86 -38.99 -0.42 -2.00 16 14 C -0.22 -2.21 10.81 -39.98 -0.43 -2.65 16 15 C 0.02 0.18 11.90 -16.79 -0.20 -0.02 16 16 N -0.51 -6.01 4.52 -10.56 -0.05 -6.06 16 17 H 0.42 5.02 6.10 -40.82 -0.25 4.77 16 18 C -0.12 -1.87 4.83 -27.02 -0.13 -2.00 16 19 C 0.12 2.47 3.86 -3.63 -0.01 2.46 16 20 N -0.61 -13.49 2.76 -172.13 -0.48 -13.96 16 21 C -0.26 -6.99 10.07 -15.06 -0.15 -7.15 16 22 H 0.09 2.47 8.06 -52.48 -0.42 2.04 16 23 C 0.02 0.59 5.34 -17.43 -0.09 0.50 16 24 N -0.91 -27.64 13.97 55.49 0.78 -26.87 16 25 Si 0.89 21.70 24.31 -169.99 -4.13 17.57 16 26 H -0.29 -6.86 6.79 56.52 0.38 -6.48 16 27 H -0.31 -7.69 7.11 56.52 0.40 -7.28 16 28 H -0.27 -6.17 5.90 56.52 0.33 -5.84 16 29 C 0.15 2.77 6.21 -3.63 -0.02 2.75 16 30 C -0.12 -1.82 4.83 -27.01 -0.13 -1.95 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.73 6.90 -51.93 -0.36 0.38 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 35 H 0.08 0.79 7.70 -51.93 -0.40 0.38 16 36 H 0.07 0.83 7.97 -51.93 -0.41 0.41 16 37 H 0.09 1.20 5.13 -51.93 -0.27 0.93 16 38 H 0.14 1.50 6.70 -52.49 -0.35 1.15 16 39 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 45 H 0.03 0.56 6.21 -51.93 -0.32 0.24 16 46 H 0.07 1.56 4.32 -51.93 -0.22 1.33 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.02 0.39 6.59 -51.93 -0.34 0.05 16 49 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 50 H 0.05 0.79 7.84 -51.93 -0.41 0.38 16 51 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -31.82 381.48 -9.65 -41.47 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.03 Total: 6.32 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.04 Total: -7.55 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.26 Total: -55.03 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.06 Total: -8.53 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.13 Total: 17.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.82 -9.65 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086919014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.810 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds