Wall clock time and date at job start Wed Apr 1 2020 03:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.32025 * 2 1 4 4 C 1.55021 * 110.44363 * 237.73049 * 2 1 3 5 5 C 1.54520 * 101.53791 * 204.71781 * 4 2 1 6 6 C 1.53705 * 103.63898 * 34.82186 * 5 4 2 7 7 N 1.47175 * 107.11373 * 338.45861 * 6 5 4 8 8 C 1.34779 * 125.65906 * 178.50857 * 7 6 5 9 9 O 1.21781 * 119.99744 * 179.97438 * 8 7 6 10 10 C 1.41514 * 120.00156 * 359.97438 * 8 7 6 11 11 C 1.35616 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.41674 * 119.99963 * 179.97438 * 11 10 8 13 13 C 1.38282 * 126.25579 * 179.97438 * 12 11 10 14 14 C 1.39791 * 107.07486 * 179.97438 * 13 12 11 15 15 C 1.35502 * 107.90907 * 359.97438 * 14 13 12 16 16 N 1.35750 * 108.91153 * 359.75904 * 15 14 13 17 17 H 0.97000 * 125.69381 * 180.28453 * 16 15 14 18 18 C 1.52265 * 110.20350 * 276.40882 * 5 4 2 19 19 C 1.53304 * 109.47012 * 296.93786 * 18 5 4 20 20 N 1.46936 * 108.70825 * 306.49724 * 19 18 5 21 21 C 1.36937 * 120.58690 * 234.27928 * 20 19 18 22 22 H 1.07993 * 120.00342 * 27.92836 * 21 20 19 23 23 C 1.38822 * 119.99823 * 207.92885 * 21 20 19 24 24 N 1.31610 * 119.99959 * 17.45675 * 23 21 20 25 25 Si 1.86791 * 119.99661 * 197.46163 * 23 21 20 26 26 H 1.48497 * 109.47289 * 89.99999 * 25 23 21 27 27 H 1.48502 * 109.47057 * 209.99613 * 25 23 21 28 28 H 1.48505 * 109.47332 * 329.99523 * 25 23 21 29 29 C 1.46934 * 118.82043 * 54.30271 * 20 19 18 30 30 C 1.52272 * 110.19705 * 153.20670 * 5 4 2 31 31 H 1.09000 * 109.46798 * 299.25406 * 1 2 3 32 32 H 1.08996 * 109.47050 * 59.25049 * 1 2 3 33 33 H 1.08997 * 109.47933 * 179.25405 * 1 2 3 34 34 H 1.09004 * 111.01007 * 86.65230 * 4 2 1 35 35 H 1.09000 * 111.01433 * 322.78499 * 4 2 1 36 36 H 1.08993 * 109.90922 * 97.83362 * 6 5 4 37 37 H 1.09001 * 109.90390 * 219.09286 * 6 5 4 38 38 H 1.07999 * 119.99993 * 359.97438 * 10 8 7 39 39 H 1.07999 * 120.00034 * 359.97438 * 11 10 8 40 40 H 1.08001 * 126.46074 * 0.02562 * 13 12 11 41 41 H 1.08005 * 126.04382 * 180.02562 * 14 13 12 42 42 H 1.08000 * 125.54143 * 180.02562 * 15 14 13 43 43 H 1.08996 * 109.47391 * 176.93377 * 18 5 4 44 44 H 1.08999 * 109.46762 * 56.92966 * 18 5 4 45 45 H 1.09001 * 109.59949 * 66.26244 * 19 18 5 46 46 H 1.08992 * 109.59947 * 186.73033 * 19 18 5 47 47 H 0.97001 * 120.00443 * 179.97438 * 24 23 21 48 48 H 1.08998 * 109.60016 * 65.46398 * 29 20 19 49 49 H 1.09010 * 109.59766 * 185.92250 * 29 20 19 50 50 H 1.08994 * 109.47702 * 303.06327 * 30 5 4 51 51 H 1.08999 * 109.47275 * 183.05534 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0221 0.0000 4 6 2.0715 -0.7755 -1.2282 5 6 3.4681 -1.2090 -0.7289 6 6 3.2506 -1.4764 0.7690 7 7 2.0429 -0.7369 1.1701 8 6 1.4967 -0.7335 2.4022 9 8 0.4918 -0.0813 2.6209 10 6 2.0909 -1.4877 3.4417 11 6 1.5409 -1.4847 4.6814 12 6 2.1355 -2.2402 5.7220 13 6 1.6867 -2.3297 7.0269 14 6 2.5667 -3.1770 7.7064 15 6 3.5158 -3.5828 6.8285 16 7 3.2620 -3.0250 5.6172 17 1 3.7877 -3.1559 4.8126 18 6 4.4723 -0.0827 -0.9328 19 6 4.6142 0.2104 -2.4309 20 7 4.9331 -1.0431 -3.1282 21 6 6.0350 -1.1298 -3.9366 22 1 6.8951 -0.5052 -3.7460 23 6 6.0463 -2.0206 -5.0013 24 7 4.9162 -2.5244 -5.4498 25 14 7.6656 -2.5042 -5.7971 26 1 8.2157 -3.7014 -5.1122 27 1 7.4389 -2.8150 -7.2314 28 1 8.6296 -1.3806 -5.6805 29 6 4.0485 -2.2015 -2.9431 30 6 3.9102 -2.4798 -1.4419 31 1 -0.3633 0.5022 0.8966 32 1 -0.3633 0.5254 -0.8832 33 1 -0.3635 -1.0275 -0.0134 34 1 2.1523 -0.1232 -2.0978 35 1 1.4487 -1.6425 -1.4487 36 1 3.1059 -2.5433 0.9383 37 1 4.1096 -1.1208 1.3380 38 1 2.9819 -2.0664 3.2477 39 1 0.6497 -0.9063 4.8753 40 1 0.8193 -1.8383 7.4424 41 1 2.5011 -3.4590 8.7469 42 1 4.3377 -4.2459 7.0547 43 1 5.4394 -0.3804 -0.5276 44 1 4.1231 0.8128 -0.4190 45 1 3.6773 0.6141 -2.8148 46 1 5.4170 0.9306 -2.5881 47 1 4.9241 -3.1465 -6.1940 48 1 3.0679 -1.9841 -3.3665 49 1 4.4780 -3.0725 -3.4383 50 1 3.1678 -3.2620 -1.2842 51 1 4.8709 -2.8048 -1.0427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086919015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:25 Heat of formation + Delta-G solvation = 51.179006 kcal Electronic energy + Delta-G solvation = -30348.247065 eV Core-core repulsion = 26442.075625 eV Total energy + Delta-G solvation = -3906.171440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.44446 -40.59707 -38.67583 -36.00705 -34.10494 -33.11524 -31.80410 -31.41059 -30.95316 -29.94361 -28.61141 -27.12922 -25.96401 -24.42059 -23.84951 -22.45635 -21.60288 -20.97694 -20.78271 -20.39635 -18.59136 -18.24786 -17.85255 -16.75265 -16.49127 -16.20940 -15.15027 -14.89402 -14.66400 -14.36715 -14.21188 -14.07637 -13.99876 -13.78102 -13.49879 -13.49197 -13.06870 -12.83114 -12.69854 -12.58296 -12.48291 -12.21364 -12.18433 -11.89673 -11.69524 -11.46218 -11.21301 -10.96100 -10.77771 -10.67712 -10.53443 -10.48816 -10.30596 -10.11274 -9.88477 -9.62736 -9.50885 -9.40328 -9.32517 -8.56879 -8.47752 -7.94166 -6.69928 -5.82427 -3.24427 0.44624 2.21790 2.71936 2.87373 3.12490 3.34546 3.42005 3.42913 3.46541 4.46382 4.51289 4.66764 4.70984 4.83049 4.88089 4.99808 5.04413 5.10348 5.23456 5.27215 5.34299 5.37470 5.49703 5.57501 5.61317 5.66238 5.70340 5.74647 5.82484 5.89135 5.95169 6.01630 6.05741 6.08744 6.16645 6.27813 6.30722 6.38721 6.47816 6.55966 6.57616 6.61126 6.65577 6.67591 6.71199 6.81377 6.94132 7.11101 7.31847 7.62247 7.65099 7.76585 8.26165 8.41773 9.18173 9.81612 10.38195 11.25858 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.002440 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.297558 B =11472.249590 C =12809.381922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.055 4.055 6 C 0.108 3.892 7 N -0.608 5.608 8 C 0.567 3.433 9 O -0.554 6.554 10 C -0.238 4.238 11 C 0.023 3.977 12 C 0.005 3.995 13 C -0.144 4.144 14 C -0.209 4.209 15 C 0.014 3.986 16 N -0.544 5.544 17 H 0.418 0.582 18 C -0.119 4.119 19 C 0.146 3.854 20 N -0.591 5.591 21 C -0.252 4.252 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.173 3.827 30 C -0.126 4.126 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.168 0.832 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.020 0.980 46 H 0.053 0.947 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.087 0.913 50 H 0.050 0.950 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 -0.995 21.571 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.056 4.056 6 C -0.015 4.015 7 N -0.341 5.341 8 C 0.361 3.639 9 O -0.436 6.436 10 C -0.260 4.260 11 C 0.002 3.998 12 C -0.105 4.105 13 C -0.169 4.169 14 C -0.233 4.233 15 C -0.121 4.121 16 N -0.138 5.138 17 H 0.255 0.745 18 C -0.158 4.158 19 C 0.019 3.981 20 N -0.313 5.313 21 C -0.382 4.382 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.546 5.546 25 Si 0.731 3.269 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 C 0.047 3.953 30 C -0.165 4.165 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.186 0.814 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.106 0.894 50 H 0.068 0.932 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.597 -0.770 21.433 22.165 hybrid contribution 1.319 -0.585 -0.840 1.670 sum -4.278 -1.356 20.593 21.076 Atomic orbital electron populations 1.22152 0.94211 1.02381 1.03264 1.21972 0.94796 0.95510 0.84516 0.90922 1.22950 0.95431 1.00446 0.96775 1.20947 0.95404 0.97734 0.91511 1.22247 0.86661 0.95856 0.96774 1.48570 1.28114 1.48166 1.09271 1.16517 0.83905 0.81894 0.81610 1.90753 1.25664 1.44932 1.82234 1.21803 1.03563 1.06176 0.94493 1.20828 0.96969 0.91963 0.89992 1.18314 0.92888 1.03058 0.96213 1.21535 1.01270 1.02134 0.92008 1.20896 0.97901 1.04449 1.00041 1.22089 1.02484 1.02799 0.84741 1.42230 1.23045 1.37126 1.11395 0.74458 1.21917 0.97791 0.96207 0.99884 1.20946 0.97919 0.89749 0.89467 1.44045 1.28764 1.05905 1.52632 1.19189 0.92049 1.21542 1.05375 0.91736 1.25030 0.96581 1.01787 0.96252 1.70023 1.24059 1.33850 1.26704 0.86307 0.83576 0.78641 0.78349 1.21504 1.21788 1.20464 1.20787 0.93373 0.92298 0.88866 1.22107 0.99772 0.94053 1.00604 0.89751 0.92223 0.92966 0.89079 0.90853 0.91742 0.91780 0.86836 0.83255 0.83798 0.84187 0.81429 0.92181 0.93093 0.96194 0.92835 0.93635 0.96182 0.89443 0.93160 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 8.71 37.16 0.32 -1.91 16 2 C 0.13 1.90 3.44 -66.32 -0.23 1.67 16 3 H 0.07 1.04 7.74 -51.93 -0.40 0.64 16 4 C -0.12 -1.76 4.37 -24.87 -0.11 -1.87 16 5 C -0.06 -0.84 0.55 -154.09 -0.08 -0.92 16 6 C 0.11 1.39 5.16 -3.31 -0.02 1.37 16 7 N -0.61 -8.41 3.25 -166.61 -0.54 -8.95 16 8 C 0.57 8.06 7.39 -15.01 -0.11 7.95 16 9 O -0.55 -9.21 13.76 5.12 0.07 -9.14 16 10 C -0.24 -2.67 8.97 -39.27 -0.35 -3.03 16 11 C 0.02 0.24 9.40 -39.21 -0.37 -0.13 16 12 C 0.01 0.05 6.74 -83.91 -0.57 -0.52 16 13 C -0.14 -1.26 10.86 -38.98 -0.42 -1.68 16 14 C -0.21 -1.60 10.81 -39.98 -0.43 -2.03 16 15 C 0.01 0.10 11.90 -16.80 -0.20 -0.10 16 16 N -0.54 -4.13 5.94 -10.56 -0.06 -4.20 16 17 H 0.42 2.40 7.87 -40.82 -0.32 2.08 16 18 C -0.12 -1.91 4.73 -26.95 -0.13 -2.04 16 19 C 0.15 2.87 6.19 -3.65 -0.02 2.84 16 20 N -0.59 -14.00 2.98 -172.17 -0.51 -14.52 16 21 C -0.25 -6.67 9.58 -15.06 -0.14 -6.82 16 22 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 23 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 24 N -0.90 -25.47 11.19 55.49 0.62 -24.85 16 25 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.17 3.85 5.04 -3.65 -0.02 3.83 16 30 C -0.13 -2.18 4.71 -26.95 -0.13 -2.31 16 31 H 0.08 1.28 5.88 -51.93 -0.31 0.98 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.46 6.10 -51.93 -0.32 1.15 16 35 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 36 H 0.06 0.78 7.77 -51.93 -0.40 0.37 16 37 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 38 H 0.11 1.05 6.13 -52.49 -0.32 0.73 16 39 H 0.15 1.56 7.46 -52.49 -0.39 1.17 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.75 7.47 -51.93 -0.39 0.36 16 45 H 0.02 0.40 6.49 -51.93 -0.34 0.06 16 46 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 49 H 0.09 2.23 6.02 -51.92 -0.31 1.92 16 50 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 51 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -31.11 392.70 -10.68 -41.79 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.05 Total: 3.48 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -3.09 Total: -5.71 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.50 Total: -52.52 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.11 -10.68 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086919015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.970 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds