Wall clock time and date at job start Wed Apr 1 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.32025 * 2 1 4 4 C 1.55021 * 110.44363 * 237.73049 * 2 1 3 5 5 C 1.54520 * 101.53791 * 204.71781 * 4 2 1 6 6 C 1.53705 * 103.63898 * 34.82186 * 5 4 2 7 7 N 1.47175 * 107.11373 * 338.45861 * 6 5 4 8 8 C 1.34779 * 125.65906 * 178.50857 * 7 6 5 9 9 O 1.21781 * 119.99744 * 179.97438 * 8 7 6 10 10 C 1.41514 * 120.00156 * 359.97438 * 8 7 6 11 11 C 1.35616 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.41674 * 119.99963 * 179.97438 * 11 10 8 13 13 C 1.38282 * 126.25579 * 179.97438 * 12 11 10 14 14 C 1.39791 * 107.07486 * 179.97438 * 13 12 11 15 15 C 1.35502 * 107.90907 * 359.97438 * 14 13 12 16 16 N 1.35750 * 108.91153 * 359.75904 * 15 14 13 17 17 H 0.97000 * 125.69381 * 180.28453 * 16 15 14 18 18 C 1.52265 * 110.20350 * 276.40882 * 5 4 2 19 19 C 1.53304 * 109.47012 * 296.93786 * 18 5 4 20 20 N 1.46936 * 108.70825 * 306.49724 * 19 18 5 21 21 C 1.36937 * 120.58690 * 234.27928 * 20 19 18 22 22 H 1.07993 * 120.00342 * 27.92836 * 21 20 19 23 23 C 1.38822 * 119.99823 * 207.92885 * 21 20 19 24 24 N 1.31610 * 119.99959 * 17.45675 * 23 21 20 25 25 Si 1.86791 * 119.99661 * 197.46163 * 23 21 20 26 26 H 1.48497 * 109.47289 * 89.99999 * 25 23 21 27 27 H 1.48502 * 109.47057 * 209.99613 * 25 23 21 28 28 H 1.48505 * 109.47332 * 329.99523 * 25 23 21 29 29 C 1.46934 * 118.82043 * 54.30271 * 20 19 18 30 30 C 1.52272 * 110.19705 * 153.20670 * 5 4 2 31 31 H 1.09000 * 109.46798 * 299.25406 * 1 2 3 32 32 H 1.08996 * 109.47050 * 59.25049 * 1 2 3 33 33 H 1.08997 * 109.47933 * 179.25405 * 1 2 3 34 34 H 1.09004 * 111.01007 * 86.65230 * 4 2 1 35 35 H 1.09000 * 111.01433 * 322.78499 * 4 2 1 36 36 H 1.08993 * 109.90922 * 97.83362 * 6 5 4 37 37 H 1.09001 * 109.90390 * 219.09286 * 6 5 4 38 38 H 1.07999 * 119.99993 * 359.97438 * 10 8 7 39 39 H 1.07999 * 120.00034 * 359.97438 * 11 10 8 40 40 H 1.08001 * 126.46074 * 0.02562 * 13 12 11 41 41 H 1.08005 * 126.04382 * 180.02562 * 14 13 12 42 42 H 1.08000 * 125.54143 * 180.02562 * 15 14 13 43 43 H 1.08996 * 109.47391 * 176.93377 * 18 5 4 44 44 H 1.08999 * 109.46762 * 56.92966 * 18 5 4 45 45 H 1.09001 * 109.59949 * 66.26244 * 19 18 5 46 46 H 1.08992 * 109.59947 * 186.73033 * 19 18 5 47 47 H 0.97001 * 120.00443 * 179.97438 * 24 23 21 48 48 H 1.08998 * 109.60016 * 65.46398 * 29 20 19 49 49 H 1.09010 * 109.59766 * 185.92250 * 29 20 19 50 50 H 1.08994 * 109.47702 * 303.06327 * 30 5 4 51 51 H 1.08999 * 109.47275 * 183.05534 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0221 0.0000 4 6 2.0715 -0.7755 -1.2282 5 6 3.4681 -1.2090 -0.7289 6 6 3.2506 -1.4764 0.7690 7 7 2.0429 -0.7369 1.1701 8 6 1.4967 -0.7335 2.4022 9 8 0.4918 -0.0813 2.6209 10 6 2.0909 -1.4877 3.4417 11 6 1.5409 -1.4847 4.6814 12 6 2.1355 -2.2402 5.7220 13 6 1.6867 -2.3297 7.0269 14 6 2.5667 -3.1770 7.7064 15 6 3.5158 -3.5828 6.8285 16 7 3.2620 -3.0250 5.6172 17 1 3.7877 -3.1559 4.8126 18 6 4.4723 -0.0827 -0.9328 19 6 4.6142 0.2104 -2.4309 20 7 4.9331 -1.0431 -3.1282 21 6 6.0350 -1.1298 -3.9366 22 1 6.8951 -0.5052 -3.7460 23 6 6.0463 -2.0206 -5.0013 24 7 4.9162 -2.5244 -5.4498 25 14 7.6656 -2.5042 -5.7971 26 1 8.2157 -3.7014 -5.1122 27 1 7.4389 -2.8150 -7.2314 28 1 8.6296 -1.3806 -5.6805 29 6 4.0485 -2.2015 -2.9431 30 6 3.9102 -2.4798 -1.4419 31 1 -0.3633 0.5022 0.8966 32 1 -0.3633 0.5254 -0.8832 33 1 -0.3635 -1.0275 -0.0134 34 1 2.1523 -0.1232 -2.0978 35 1 1.4487 -1.6425 -1.4487 36 1 3.1059 -2.5433 0.9383 37 1 4.1096 -1.1208 1.3380 38 1 2.9819 -2.0664 3.2477 39 1 0.6497 -0.9063 4.8753 40 1 0.8193 -1.8383 7.4424 41 1 2.5011 -3.4590 8.7469 42 1 4.3377 -4.2459 7.0547 43 1 5.4394 -0.3804 -0.5276 44 1 4.1231 0.8128 -0.4190 45 1 3.6773 0.6141 -2.8148 46 1 5.4170 0.9306 -2.5881 47 1 4.9241 -3.1465 -6.1940 48 1 3.0679 -1.9841 -3.3665 49 1 4.4780 -3.0725 -3.4383 50 1 3.1678 -3.2620 -1.2842 51 1 4.8709 -2.8048 -1.0427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086919015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:24 Heat of formation + Delta-G solvation = 34.606801 kcal Electronic energy + Delta-G solvation = -30348.965690 eV Core-core repulsion = 26442.075625 eV Total energy + Delta-G solvation = -3906.890065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.07778 -41.70606 -39.90577 -37.48982 -34.96257 -34.73287 -32.86511 -32.64905 -31.99047 -31.54624 -29.38148 -28.60461 -27.16886 -25.83521 -24.99829 -23.93632 -22.65360 -22.46282 -21.45381 -21.10012 -19.72659 -19.51096 -18.77715 -18.25518 -17.56856 -17.33924 -16.79372 -16.20265 -15.70977 -15.62065 -15.26140 -15.13454 -15.01616 -14.87332 -14.84017 -14.62661 -14.32747 -14.26753 -13.97848 -13.50974 -13.29355 -13.17711 -13.15214 -13.08285 -13.01147 -12.88652 -12.84309 -12.58222 -12.29893 -12.20632 -12.07793 -11.87256 -11.75067 -11.45103 -11.29895 -11.08910 -11.00066 -10.62103 -10.48840 -9.89961 -9.62816 -8.63334 -8.60400 -7.85055 -5.29261 -0.32884 1.47338 1.48738 1.56940 1.57106 2.03639 2.08095 2.35138 2.52670 2.56699 3.27571 3.48675 3.53588 3.72810 3.81251 3.93505 3.99784 4.12160 4.22923 4.29928 4.37035 4.41670 4.44397 4.49930 4.52428 4.53951 4.61959 4.69032 4.72910 4.73549 4.81693 4.90100 4.94031 4.96734 5.03198 5.12017 5.14959 5.23691 5.29086 5.29495 5.35398 5.37042 5.39130 5.43550 5.56326 5.59221 5.68434 5.82905 5.94987 6.07374 6.42034 6.59731 6.62572 7.18384 7.21931 7.90607 8.41334 9.20606 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.002440 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.297558 B =11472.249590 C =12809.381922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.052 4.052 6 C 0.116 3.884 7 N -0.610 5.610 8 C 0.564 3.436 9 O -0.588 6.588 10 C -0.260 4.260 11 C 0.043 3.957 12 C -0.025 4.025 13 C -0.149 4.149 14 C -0.228 4.228 15 C 0.029 3.971 16 N -0.541 5.541 17 H 0.426 0.574 18 C -0.105 4.105 19 C 0.142 3.858 20 N -0.608 5.608 21 C -0.258 4.258 22 H 0.064 0.936 23 C -0.050 4.050 24 N -0.933 5.933 25 Si 0.963 3.037 26 H -0.285 1.285 27 H -0.298 1.298 28 H -0.270 1.270 29 C 0.180 3.820 30 C -0.111 4.111 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.202 0.798 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.017 0.983 46 H 0.049 0.951 47 H 0.249 0.751 48 H -0.001 1.001 49 H 0.051 0.949 50 H 0.067 0.933 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 -1.687 24.206 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.053 4.053 6 C -0.006 4.006 7 N -0.343 5.343 8 C 0.359 3.641 9 O -0.473 6.473 10 C -0.282 4.282 11 C 0.022 3.978 12 C -0.134 4.134 13 C -0.175 4.175 14 C -0.252 4.252 15 C -0.107 4.107 16 N -0.136 5.136 17 H 0.266 0.734 18 C -0.144 4.144 19 C 0.016 3.984 20 N -0.331 5.331 21 C -0.389 4.389 22 H 0.082 0.918 23 C -0.246 4.246 24 N -0.580 5.580 25 Si 0.791 3.209 26 H -0.212 1.212 27 H -0.225 1.225 28 H -0.195 1.195 29 C 0.054 3.946 30 C -0.150 4.150 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.175 0.825 42 H 0.219 0.781 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.035 0.965 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.017 0.983 49 H 0.069 0.931 50 H 0.085 0.915 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.330 -1.445 24.079 24.508 hybrid contribution 0.898 -0.363 -1.538 1.817 sum -3.432 -1.809 22.541 22.873 Atomic orbital electron populations 1.22058 0.94116 1.01964 1.03089 1.21901 0.94875 0.95437 0.84386 0.90905 1.22826 0.95453 1.00116 0.96603 1.20842 0.95004 0.96200 0.93234 1.22159 0.86950 0.96833 0.94670 1.48580 1.28351 1.48218 1.09126 1.16943 0.83489 0.81630 0.81994 1.90736 1.27229 1.46572 1.82717 1.21688 1.04986 1.07649 0.93851 1.20820 0.96105 0.90758 0.90069 1.18269 0.94320 1.04640 0.96211 1.21878 1.01596 1.01877 0.92100 1.21239 0.98076 1.04647 1.01201 1.22718 1.02462 1.01555 0.83963 1.42302 1.22531 1.36581 1.12155 0.73417 1.21751 0.98342 0.97420 0.96890 1.21082 0.97503 0.88188 0.91600 1.44299 1.28412 1.07683 1.52737 1.19492 0.92939 1.21037 1.05385 0.91782 1.25733 0.99318 1.02350 0.97184 1.70175 1.25855 1.34673 1.27278 0.85333 0.80248 0.78400 0.76872 1.21178 1.22479 1.19502 1.20577 0.91552 0.90558 0.91922 1.21879 1.00561 0.95738 0.96864 0.91117 0.91108 0.93499 0.90592 0.91184 0.90162 0.89948 0.84771 0.84132 0.83035 0.82539 0.78136 0.91905 0.91100 0.96498 0.93217 0.94231 0.98305 0.93082 0.91469 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 8.71 71.98 0.63 -3.57 16 2 C 0.14 3.71 3.44 45.49 0.16 3.87 16 3 H 0.07 1.99 7.74 -2.39 -0.02 1.97 16 4 C -0.11 -3.25 4.37 31.80 0.14 -3.11 16 5 C -0.05 -1.48 0.55 -51.91 -0.03 -1.51 16 6 C 0.12 2.66 5.16 86.49 0.45 3.11 16 7 N -0.61 -15.79 3.25 -799.20 -2.60 -18.39 16 8 C 0.56 15.36 7.39 85.05 0.63 15.99 16 9 O -0.59 -19.48 13.76 -4.61 -0.06 -19.54 16 10 C -0.26 -5.38 8.97 22.47 0.20 -5.18 16 11 C 0.04 0.84 9.40 22.51 0.21 1.05 16 12 C -0.02 -0.42 6.74 39.08 0.26 -0.15 16 13 C -0.15 -2.33 10.86 22.66 0.25 -2.08 16 14 C -0.23 -2.86 10.81 22.01 0.24 -2.62 16 15 C 0.03 0.30 11.90 83.45 0.99 1.29 16 16 N -0.54 -6.64 5.94 -187.33 -1.11 -7.75 16 17 H 0.43 3.53 7.87 -92.71 -0.73 2.80 16 18 C -0.11 -3.18 4.73 30.45 0.14 -3.04 16 19 C 0.14 5.53 6.19 86.40 0.53 6.06 16 20 N -0.61 -29.08 2.98 -698.62 -2.08 -31.17 16 21 C -0.26 -13.80 9.58 84.04 0.80 -12.99 16 22 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 23 C -0.05 -2.76 4.91 84.87 0.42 -2.35 16 24 N -0.93 -54.25 11.19 21.65 0.24 -54.01 16 25 Si 0.96 44.10 29.59 68.60 2.03 46.13 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 29 C 0.18 8.15 5.04 86.40 0.44 8.59 16 30 C -0.11 -3.72 4.71 30.45 0.14 -3.57 16 31 H 0.07 2.15 5.88 -2.39 -0.01 2.14 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 2.44 6.10 -2.38 -0.01 2.43 16 35 H 0.07 2.08 7.92 -2.39 -0.02 2.06 16 36 H 0.08 1.64 7.77 -2.39 -0.02 1.62 16 37 H 0.08 1.65 7.82 -2.39 -0.02 1.63 16 38 H 0.13 2.11 6.13 -2.91 -0.02 2.09 16 39 H 0.14 2.91 7.46 -2.91 -0.02 2.89 16 40 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 1.90 7.47 -2.39 -0.02 1.88 16 45 H 0.02 0.68 6.49 -2.39 -0.02 0.66 16 46 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 47 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 48 H 0.00 -0.06 7.57 -2.39 -0.02 -0.07 16 49 H 0.05 2.69 6.02 -2.38 -0.01 2.67 16 50 H 0.07 2.02 8.11 -2.39 -0.02 2.00 16 51 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -68.61 392.70 3.22 -65.39 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.20 Total: 19.55 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 6.60 Total: -0.21 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -5.55 Total: -111.31 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.06 Total: -19.54 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.61 3.22 -65.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086919015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.998 kcal (2) G-P(sol) polarization free energy of solvation -68.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds