Wall clock time and date at job start Wed Apr 1 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.86838 * 2 1 4 4 C 1.54460 * 109.87585 * 121.15687 * 2 1 3 5 5 C 1.54366 * 102.87439 * 140.91775 * 4 2 1 6 6 C 1.54144 * 102.47905 * 325.36327 * 5 4 2 7 7 N 1.47085 * 109.87354 * 238.99426 * 2 1 3 8 8 C 1.34768 * 125.63152 * 61.55764 * 7 2 1 9 9 O 1.21786 * 120.00235 * 0.04533 * 8 7 2 10 10 C 1.41515 * 120.00124 * 180.02562 * 8 7 2 11 11 C 1.35614 * 120.00436 * 185.59450 * 10 8 7 12 12 C 1.41684 * 119.99655 * 8.17699 * 11 10 8 13 13 C 1.38284 * 126.25459 * 221.25046 * 12 11 10 14 14 C 1.39792 * 107.07262 * 179.88273 * 13 12 11 15 15 C 1.35501 * 107.91089 * 0.38722 * 14 13 12 16 16 N 1.35757 * 108.91188 * 359.75968 * 15 14 13 17 17 H 0.96996 * 125.68998 * 180.02562 * 16 15 14 18 18 C 1.52109 * 110.56364 * 207.40825 * 5 4 2 19 19 C 1.53347 * 109.44042 * 177.20420 * 18 5 4 20 20 N 1.46928 * 108.68920 * 53.29429 * 19 18 5 21 21 C 1.36936 * 120.54430 * 125.64045 * 20 19 18 22 22 H 1.07999 * 120.00272 * 327.66470 * 21 20 19 23 23 C 1.38810 * 120.00189 * 147.67212 * 21 20 19 24 24 N 1.31626 * 119.99576 * 349.39068 * 23 21 20 25 25 Si 1.86804 * 120.00560 * 169.38716 * 23 21 20 26 26 H 1.48491 * 109.47080 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.46661 * 300.00151 * 25 23 21 28 28 H 1.48497 * 109.46483 * 59.99725 * 25 23 21 29 29 C 1.46930 * 118.90553 * 305.91596 * 20 19 18 30 30 C 1.52114 * 110.55344 * 83.31478 * 5 4 2 31 31 H 1.08993 * 109.47768 * 179.55387 * 1 2 3 32 32 H 1.09005 * 109.47273 * 299.55669 * 1 2 3 33 33 H 1.09004 * 109.47448 * 59.54826 * 1 2 3 34 34 H 1.09001 * 110.73086 * 22.57631 * 4 2 1 35 35 H 1.08994 * 110.73523 * 259.26430 * 4 2 1 36 36 H 1.09001 * 110.37595 * 154.90260 * 6 5 4 37 37 H 1.09001 * 110.37510 * 277.14110 * 6 5 4 38 38 H 1.08000 * 120.00138 * 5.58965 * 10 8 7 39 39 H 1.07997 * 120.00565 * 188.18275 * 11 10 8 40 40 H 1.07996 * 126.46490 * 0.03303 * 13 12 11 41 41 H 1.07995 * 126.04293 * 180.11392 * 14 13 12 42 42 H 1.07996 * 125.54456 * 179.78181 * 15 14 13 43 43 H 1.08991 * 109.47844 * 57.21313 * 18 5 4 44 44 H 1.09000 * 109.47635 * 297.18972 * 18 5 4 45 45 H 1.09000 * 109.59729 * 293.53884 * 19 18 5 46 46 H 1.09001 * 109.73366 * 173.14147 * 19 18 5 47 47 H 0.97004 * 119.99700 * 180.02562 * 24 23 21 48 48 H 1.08996 * 109.60132 * 173.84260 * 29 20 19 49 49 H 1.09003 * 109.59545 * 294.32573 * 29 20 19 50 50 H 1.09004 * 109.47090 * 302.79889 * 30 5 4 51 51 H 1.09003 * 109.47254 * 62.80710 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0552 -0.7515 1.2431 5 6 3.2706 -1.5253 0.6892 6 6 2.8167 -1.8791 -0.7408 7 7 2.0300 -0.7125 -1.1856 8 6 1.8063 -0.3587 -2.4666 9 8 1.1393 0.6287 -2.7180 10 6 2.3468 -1.1343 -3.5197 11 6 2.2187 -0.7175 -4.8038 12 6 1.7006 0.5716 -5.0817 13 6 0.8069 0.8946 -6.0863 14 6 0.5669 2.2688 -5.9959 15 6 1.3057 2.7542 -4.9689 16 7 1.9995 1.7327 -4.4048 17 1 2.6046 1.8083 -3.6504 18 6 3.5160 -2.7875 1.5018 19 6 4.6830 -3.5706 0.8883 20 7 5.8381 -2.6715 0.7609 21 6 7.0470 -3.0099 1.3079 22 1 7.0846 -3.5931 2.2161 23 6 8.2243 -2.6031 0.6953 24 7 8.1908 -2.0775 -0.5110 25 14 9.8561 -2.8014 1.5827 26 1 10.9534 -2.2949 0.7199 27 1 9.8266 -2.0298 2.8511 28 1 10.0852 -4.2377 1.8821 29 6 5.6730 -1.4007 0.0422 30 6 4.5019 -0.6326 0.6557 31 1 -0.3634 -1.0275 -0.0080 32 1 -0.3634 0.5070 0.8940 33 1 -0.3634 0.5208 -0.8859 34 1 1.3011 -1.4398 1.6250 35 1 2.3649 -0.0489 2.0165 36 1 3.6814 -2.0231 -1.3887 37 1 2.1970 -2.7757 -0.7313 38 1 2.8614 -2.0583 -3.3007 39 1 2.5115 -1.3681 -5.6146 40 1 0.3739 0.2133 -6.8037 41 1 -0.0878 2.8429 -6.6347 42 1 1.3372 3.7857 -4.6507 43 1 2.6186 -3.4059 1.4925 44 1 3.7603 -2.5166 2.5290 45 1 4.3974 -3.9407 -0.0963 46 1 4.9424 -4.4101 1.5334 47 1 9.0135 -1.7936 -0.9393 48 1 6.5838 -0.8088 0.1322 49 1 5.4656 -1.5996 -1.0092 50 1 4.2923 0.2531 0.0559 51 1 4.7599 -0.3313 1.6710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086919017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:33 Heat of formation + Delta-G solvation = 70.399325 kcal Electronic energy + Delta-G solvation = -31465.266841 eV Core-core repulsion = 27559.928856 eV Total energy + Delta-G solvation = -3905.337985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.19600 -40.38263 -38.49423 -36.08366 -33.74212 -33.15594 -31.83093 -30.85220 -30.72089 -30.04572 -28.15932 -27.23457 -25.78826 -24.49948 -23.81433 -22.37852 -21.54655 -20.78075 -20.19881 -20.00696 -19.02525 -18.24352 -17.58517 -16.91073 -16.32441 -15.64050 -14.97850 -14.76201 -14.57058 -14.22002 -14.09274 -13.75484 -13.72503 -13.50640 -13.32478 -13.22377 -13.13759 -12.93475 -12.65142 -12.62541 -12.26876 -12.14600 -11.93318 -11.81413 -11.71002 -11.47514 -11.22283 -11.04464 -10.85675 -10.77850 -10.51938 -10.27089 -10.23378 -9.92817 -9.82216 -9.65562 -9.57006 -9.42578 -8.71515 -8.51494 -8.37789 -7.53355 -6.64224 -5.83625 -3.32342 0.79938 2.67389 3.09236 3.19419 3.34079 3.39962 3.40539 3.49534 3.63326 4.44186 4.58249 4.69309 4.96807 5.03217 5.05009 5.26529 5.27528 5.30145 5.36663 5.39590 5.46726 5.53057 5.53477 5.61412 5.62781 5.72689 5.78020 5.87653 5.92438 5.97297 6.01313 6.05113 6.10084 6.14634 6.25069 6.28500 6.36964 6.40987 6.42358 6.56123 6.56811 6.64132 6.69197 6.80528 6.90582 7.08448 7.26387 7.30042 7.61435 7.68768 7.74407 7.75087 8.32202 8.43645 9.17802 9.78995 10.37179 11.24288 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.003165 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.194433 B = 8844.647715 C =10103.272275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.070 0.930 4 C -0.123 4.123 5 C -0.054 4.054 6 C 0.106 3.894 7 N -0.603 5.603 8 C 0.556 3.444 9 O -0.549 6.549 10 C -0.232 4.232 11 C 0.015 3.985 12 C 0.026 3.974 13 C -0.166 4.166 14 C -0.217 4.217 15 C 0.010 3.990 16 N -0.500 5.500 17 H 0.414 0.586 18 C -0.118 4.118 19 C 0.145 3.855 20 N -0.590 5.590 21 C -0.255 4.255 22 H 0.062 0.938 23 C 0.007 3.993 24 N -0.904 5.904 25 Si 0.903 3.097 26 H -0.290 1.290 27 H -0.284 1.284 28 H -0.282 1.282 29 C 0.174 3.826 30 C -0.126 4.126 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.157 0.843 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.017 0.983 46 H 0.054 0.946 47 H 0.254 0.746 48 H 0.086 0.914 49 H 0.017 0.983 50 H 0.046 0.954 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.631 4.559 -4.578 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.161 4.161 5 C -0.055 4.055 6 C -0.016 4.016 7 N -0.336 5.336 8 C 0.350 3.650 9 O -0.431 6.431 10 C -0.253 4.253 11 C -0.006 4.006 12 C -0.086 4.086 13 C -0.191 4.191 14 C -0.241 4.241 15 C -0.127 4.127 16 N -0.091 5.091 17 H 0.253 0.747 18 C -0.158 4.158 19 C 0.018 3.982 20 N -0.313 5.313 21 C -0.385 4.385 22 H 0.080 0.920 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.733 3.267 26 H -0.216 1.216 27 H -0.210 1.210 28 H -0.208 1.208 29 C 0.049 3.951 30 C -0.165 4.165 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.151 0.849 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.175 0.825 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.035 0.965 50 H 0.065 0.935 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.712 5.144 -4.735 16.289 hybrid contribution 1.111 -0.179 0.898 1.440 sum -13.601 4.965 -3.837 14.979 Atomic orbital electron populations 1.22116 0.95160 1.01950 1.02472 1.21499 0.93975 0.96168 0.84828 0.91182 1.22817 0.97814 0.99302 0.96152 1.20968 0.94692 0.96531 0.93309 1.22503 0.94974 0.87506 0.96630 1.48632 1.51491 1.28588 1.04872 1.16868 0.81183 0.85049 0.81929 1.90878 1.41315 1.27776 1.83098 1.22186 1.06373 1.03502 0.93289 1.20821 0.91055 0.92405 0.96324 1.17959 1.05984 0.87204 0.97498 1.21211 1.02148 0.95809 0.99924 1.20638 1.06126 0.95058 1.02312 1.21827 0.98932 0.93428 0.98511 1.42158 1.34867 1.06505 1.25602 0.74736 1.21870 0.99123 0.95291 0.99496 1.20951 0.87657 0.92528 0.97053 1.43956 1.06551 1.16060 1.64722 1.19109 0.82886 1.32580 1.03892 0.91996 1.25172 0.98025 1.00860 0.95182 1.69960 1.26748 1.45475 1.12600 0.86363 0.83433 0.78026 0.78854 1.21610 1.21009 1.20842 1.20696 0.95271 0.86833 0.92339 1.21955 0.95879 0.97263 1.01384 0.92812 0.92154 0.91389 0.90854 0.90351 0.89425 0.91841 0.84896 0.83990 0.84891 0.85182 0.82548 0.92906 0.91831 0.96492 0.92731 0.93567 0.89610 0.96514 0.93483 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.10 37.16 0.34 -1.61 16 2 C 0.14 1.83 3.10 -66.85 -0.21 1.62 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.12 -1.54 5.42 -25.25 -0.14 -1.68 16 5 C -0.05 -0.80 0.54 -154.10 -0.08 -0.89 16 6 C 0.11 1.53 4.41 -2.86 -0.01 1.51 16 7 N -0.60 -8.54 3.06 -166.66 -0.51 -9.05 16 8 C 0.56 8.24 6.95 -15.02 -0.10 8.13 16 9 O -0.55 -8.98 10.86 5.11 0.06 -8.92 16 10 C -0.23 -3.04 9.32 -39.27 -0.37 -3.41 16 11 C 0.01 0.18 9.96 -39.21 -0.39 -0.21 16 12 C 0.03 0.35 5.23 -83.90 -0.44 -0.08 16 13 C -0.17 -2.13 10.86 -38.98 -0.42 -2.56 16 14 C -0.22 -2.68 10.81 -39.98 -0.43 -3.11 16 15 C 0.01 0.12 11.90 -16.79 -0.20 -0.08 16 16 N -0.50 -6.69 3.94 -10.56 -0.04 -6.73 16 17 H 0.41 5.52 7.67 -40.82 -0.31 5.21 16 18 C -0.12 -1.82 4.83 -27.01 -0.13 -1.95 16 19 C 0.14 2.77 6.25 -3.63 -0.02 2.74 16 20 N -0.59 -13.80 2.97 -172.40 -0.51 -14.31 16 21 C -0.25 -6.69 9.56 -15.06 -0.14 -6.84 16 22 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 23 C 0.01 0.17 5.04 -17.43 -0.09 0.09 16 24 N -0.90 -25.27 11.12 55.49 0.62 -24.65 16 25 Si 0.90 21.11 29.57 -169.99 -5.03 16.08 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 C 0.17 3.87 4.93 -3.86 -0.02 3.85 16 30 C -0.13 -2.22 4.82 -27.23 -0.13 -2.35 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.97 6.87 -51.93 -0.36 0.61 16 34 H 0.07 0.84 7.70 -51.93 -0.40 0.44 16 35 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 36 H 0.09 1.41 5.30 -51.93 -0.28 1.14 16 37 H 0.06 0.85 7.97 -51.93 -0.41 0.44 16 38 H 0.13 1.62 6.84 -52.49 -0.36 1.26 16 39 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.33 7.63 -51.93 -0.40 -0.07 16 46 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.09 2.20 6.15 -51.93 -0.32 1.88 16 49 H 0.02 0.39 6.58 -51.93 -0.34 0.05 16 50 H 0.05 0.80 7.84 -51.93 -0.41 0.40 16 51 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -29.92 389.53 -10.72 -40.65 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.18 Total: 7.88 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.99 Total: -6.82 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.45 Total: -54.74 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.06 Total: -8.92 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.92 -10.72 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086919017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.045 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds