Wall clock time and date at job start Wed Apr 1 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47364 * 2 1 4 4 H 1.09002 * 109.87477 * 302.57913 * 3 2 1 5 5 C 1.54327 * 110.01199 * 181.48176 * 3 2 1 6 6 H 1.09002 * 110.71988 * 336.68294 * 5 3 2 7 7 N 1.46500 * 110.72265 * 99.77685 * 5 3 2 8 8 C 1.34770 * 120.00475 * 205.00352 * 7 5 3 9 9 O 1.21597 * 119.99579 * 359.97438 * 8 7 5 10 10 C 1.47518 * 120.00716 * 179.97438 * 8 7 5 11 11 C 1.39817 * 120.20790 * 359.97438 * 10 8 7 12 12 C 1.37393 * 120.12240 * 180.09433 * 11 10 8 13 13 C 1.39760 * 120.39280 * 0.02907 * 12 11 10 14 14 C 1.39306 * 119.29502 * 359.71154 * 13 12 11 15 15 C 1.37429 * 120.65325 * 0.14591 * 14 13 12 16 16 C 1.51616 * 107.88585 * 180.75260 * 14 13 12 17 17 C 1.54606 * 102.74590 * 15.73962 * 16 14 13 18 18 N 1.39459 * 129.75567 * 179.27387 * 13 12 11 19 19 C 1.46898 * 110.99766 * 39.78879 * 18 13 12 20 20 C 1.55155 * 102.94186 * 218.31732 * 5 3 2 21 21 C 1.54686 * 101.67746 * 35.33376 * 20 5 3 22 22 N 1.47016 * 109.88471 * 63.59615 * 3 2 1 23 23 C 1.36942 * 125.64494 * 298.47794 * 22 3 2 24 24 H 1.07998 * 120.00111 * 336.16238 * 23 22 3 25 25 C 1.38813 * 119.99635 * 156.15672 * 23 22 3 26 26 N 1.31629 * 119.99860 * 160.51485 * 25 23 22 27 27 Si 1.86797 * 120.00479 * 340.51898 * 25 23 22 28 28 H 1.48499 * 109.47162 * 89.57061 * 27 25 23 29 29 H 1.48497 * 109.46990 * 329.57375 * 27 25 23 30 30 H 1.48496 * 109.47491 * 209.56964 * 27 25 23 31 31 H 1.09007 * 109.46905 * 292.65459 * 1 2 3 32 32 H 1.09007 * 109.47418 * 52.64884 * 1 2 3 33 33 H 1.08997 * 109.47296 * 172.65541 * 1 2 3 34 34 H 1.09007 * 109.47221 * 240.00179 * 2 1 3 35 35 H 1.08999 * 109.47505 * 120.00127 * 2 1 3 36 36 H 0.97006 * 119.99818 * 24.99495 * 7 5 3 37 37 H 1.08001 * 119.93700 * 0.12368 * 11 10 8 38 38 H 1.07999 * 119.79912 * 180.02562 * 12 11 10 39 39 H 1.07995 * 120.01923 * 180.02562 * 15 14 13 40 40 H 1.09003 * 110.76131 * 134.05461 * 16 14 13 41 41 H 1.09006 * 110.75632 * 257.24248 * 16 14 13 42 42 H 1.09000 * 110.77625 * 92.79644 * 17 16 14 43 43 H 1.09003 * 110.77717 * 216.03254 * 17 16 14 44 44 H 1.09010 * 109.47285 * 59.86899 * 19 18 13 45 45 H 1.08994 * 109.47111 * 179.86756 * 19 18 13 46 46 H 1.09008 * 109.47324 * 299.87403 * 19 18 13 47 47 H 1.09004 * 111.00571 * 153.57692 * 20 5 3 48 48 H 1.09003 * 111.00594 * 277.42906 * 20 5 3 49 49 H 1.08995 * 110.39563 * 204.36445 * 21 20 5 50 50 H 1.09000 * 110.23764 * 82.11096 * 21 20 5 51 51 H 0.96997 * 120.00170 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6431 1.9759 -0.8638 5 6 3.5827 1.4571 -0.0375 6 1 3.9868 0.5212 0.3483 7 7 4.0659 1.7064 -1.3979 8 6 5.2891 1.2783 -1.7677 9 8 5.9920 0.6856 -0.9719 10 6 5.7754 1.5288 -3.1377 11 6 4.9707 2.2094 -4.0564 12 6 5.4246 2.4399 -5.3325 13 6 6.6913 1.9970 -5.7233 14 6 7.4919 1.3241 -4.8031 15 6 7.0461 1.0923 -3.5240 16 6 8.8011 0.9824 -5.4872 17 6 8.7812 1.8933 -6.7363 18 7 7.3349 2.1104 -6.9552 19 6 7.0857 3.4256 -7.5603 20 6 3.9419 2.6387 0.9018 21 6 2.8344 2.5322 1.9764 22 7 1.6271 2.1189 1.2383 23 6 0.3349 2.3344 1.6371 24 1 -0.4586 2.3633 0.9050 25 6 0.0449 2.5157 2.9825 26 7 -1.0836 3.0908 3.3408 27 14 1.2561 1.9437 4.2844 28 1 2.2105 3.0401 4.5885 29 1 2.0028 0.7629 3.7812 30 1 0.5181 1.5736 5.5187 31 1 -0.3633 0.3959 0.9484 32 1 -0.3634 0.6235 -0.8170 33 1 -0.3634 -1.0192 -0.1314 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.5052 2.1794 -2.0326 37 1 3.9906 2.5549 -3.7622 38 1 4.7988 2.9666 -6.0378 39 1 7.6755 0.5699 -2.8188 40 1 9.6476 1.2258 -4.8451 41 1 8.8247 -0.0693 -5.7729 42 1 9.2878 2.8371 -6.5346 43 1 9.2330 1.3885 -7.5902 44 1 7.4565 4.2070 -6.8967 45 1 7.6009 3.4882 -8.5187 46 1 6.0146 3.5578 -7.7141 47 1 4.9299 2.5018 1.3415 48 1 3.8793 3.5904 0.3740 49 1 2.6746 3.4988 2.4542 50 1 3.1008 1.7804 2.7193 51 1 -1.2861 3.2178 4.2808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087786050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:21 Heat of formation + Delta-G solvation = 32.552039 kcal Electronic energy + Delta-G solvation = -30112.084949 eV Core-core repulsion = 26205.105783 eV Total energy + Delta-G solvation = -3906.979166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.19337 -39.81670 -38.12236 -36.61935 -34.28144 -33.23597 -32.50129 -32.13118 -30.54071 -29.61863 -28.96587 -27.14375 -26.30550 -24.59240 -23.44791 -22.63933 -22.14299 -21.43687 -20.80878 -20.24114 -19.34665 -17.62038 -17.03077 -16.82733 -16.44223 -16.19933 -15.76572 -15.11597 -14.98000 -14.75120 -14.44962 -14.07053 -13.93625 -13.63178 -13.53558 -13.30098 -13.18484 -13.02728 -12.83050 -12.76782 -12.45833 -12.36344 -12.14560 -12.01808 -11.88063 -11.83249 -11.37602 -11.18921 -11.07711 -10.90532 -10.64384 -10.39895 -10.29467 -10.25603 -10.07954 -9.87855 -9.74949 -9.31894 -9.17080 -8.82529 -8.60447 -8.11210 -7.00560 -5.95534 -3.29261 0.63121 1.09217 2.71962 3.19368 3.26929 3.36720 3.49949 3.52624 3.69711 4.10389 4.17369 4.53608 4.54834 4.58798 4.68701 4.79094 4.82709 4.91999 4.97025 5.06117 5.08332 5.16558 5.20462 5.23370 5.30595 5.31477 5.42582 5.47452 5.61814 5.65573 5.81571 5.85512 5.91983 5.94842 5.97234 6.10746 6.13806 6.21536 6.21914 6.34507 6.43579 6.48314 6.56288 6.62021 6.65372 6.75051 6.77487 6.80067 7.05101 7.37902 7.63046 7.76072 8.29780 8.32833 8.82246 9.67194 10.17547 11.19895 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023319 B = 0.002302 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.433337 B =12159.347037 C =12489.831617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.158 3.842 4 H 0.045 0.955 5 C 0.134 3.866 6 H 0.098 0.902 7 N -0.711 5.711 8 C 0.561 3.439 9 O -0.543 6.543 10 C -0.155 4.155 11 C -0.056 4.056 12 C -0.146 4.146 13 C 0.118 3.882 14 C -0.154 4.154 15 C -0.018 4.018 16 C -0.083 4.083 17 C 0.045 3.955 18 N -0.480 5.480 19 C 0.015 3.985 20 C -0.140 4.140 21 C 0.110 3.890 22 N -0.599 5.599 23 C -0.233 4.233 24 H 0.095 0.905 25 C 0.023 3.977 26 N -0.909 5.909 27 Si 0.881 3.119 28 H -0.287 1.287 29 H -0.271 1.271 30 H -0.303 1.303 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.398 0.602 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.060 0.940 50 H 0.029 0.971 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.376 -0.672 -21.875 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.051 3.949 4 H 0.063 0.937 5 C 0.029 3.971 6 H 0.116 0.884 7 N -0.361 5.361 8 C 0.349 3.651 9 O -0.421 6.421 10 C -0.159 4.159 11 C -0.076 4.076 12 C -0.167 4.167 13 C 0.019 3.981 14 C -0.157 4.157 15 C -0.038 4.038 16 C -0.120 4.120 17 C -0.080 4.080 18 N -0.193 5.193 19 C -0.131 4.131 20 C -0.180 4.180 21 C -0.015 4.015 22 N -0.325 5.325 23 C -0.360 4.360 24 H 0.113 0.887 25 C -0.175 4.175 26 N -0.552 5.552 27 Si 0.712 3.288 28 H -0.214 1.214 29 H -0.196 1.196 30 H -0.231 1.231 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.234 0.766 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.047 0.953 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.502 -1.363 -21.583 28.460 hybrid contribution 0.478 0.402 0.908 1.102 sum 18.980 -0.961 -20.675 28.082 Atomic orbital electron populations 1.21962 0.95246 0.99161 1.04665 1.21890 0.97354 0.97187 0.99961 1.21184 0.89686 0.92492 0.91550 0.93742 1.22122 0.94983 0.99312 0.80665 0.88401 1.45923 1.17058 1.58616 1.14537 1.18071 0.81527 0.78674 0.86829 1.90770 1.56099 1.41831 1.53429 1.19783 0.96223 1.05497 0.94433 1.21069 0.98838 0.95256 0.92387 1.20349 0.94798 1.04759 0.96765 1.19838 0.94399 0.95721 0.88157 1.20391 0.97385 1.04234 0.93733 1.20421 0.94099 0.95121 0.94151 1.21301 0.94930 1.00672 0.95123 1.23301 0.86326 0.99724 0.98693 1.60226 1.09520 1.29786 1.19785 1.22588 1.03314 0.87400 0.99777 1.23092 0.98908 0.98206 0.97756 1.21943 0.86648 0.98802 0.94104 1.44742 1.01799 1.64627 1.21350 1.18567 0.82195 1.43109 0.92088 0.88737 1.25111 0.95994 0.99567 0.96874 1.69802 1.24887 1.43848 1.16711 0.86970 0.80503 0.79802 0.81571 1.21418 1.19627 1.23121 0.88594 0.93990 0.95096 0.93859 0.92553 0.76601 0.84989 0.85449 0.84642 0.89724 0.89206 0.91877 0.88486 0.93971 0.90416 0.90384 0.91283 0.91025 0.92166 0.95301 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.85 37.15 0.33 -2.59 16 2 C -0.12 -2.28 5.50 -26.73 -0.15 -2.43 16 3 C 0.16 2.97 3.02 -66.95 -0.20 2.77 16 4 H 0.04 0.81 7.72 -51.93 -0.40 0.41 16 5 C 0.13 2.27 2.84 -66.10 -0.19 2.08 16 6 H 0.10 1.81 7.26 -51.93 -0.38 1.43 16 7 N -0.71 -9.93 5.13 -53.07 -0.27 -10.20 16 8 C 0.56 8.32 7.76 -12.48 -0.10 8.22 16 9 O -0.54 -9.90 15.99 5.28 0.08 -9.82 16 10 C -0.16 -1.89 5.88 -104.94 -0.62 -2.50 16 11 C -0.06 -0.55 9.52 -39.30 -0.37 -0.93 16 12 C -0.15 -1.33 9.50 -39.32 -0.37 -1.70 16 13 C 0.12 1.13 5.95 -83.42 -0.50 0.63 16 14 C -0.15 -1.53 6.22 -104.07 -0.65 -2.18 16 15 C -0.02 -0.21 9.58 -39.29 -0.38 -0.59 16 16 C -0.08 -0.58 7.04 -26.59 -0.19 -0.77 16 17 C 0.05 0.27 6.90 -2.44 -0.02 0.25 16 18 N -0.48 -3.80 5.29 -176.82 -0.94 -4.73 16 19 C 0.02 0.09 9.14 60.06 0.55 0.64 16 20 C -0.14 -2.47 6.76 -24.70 -0.17 -2.63 16 21 C 0.11 2.37 4.76 -2.65 -0.01 2.36 16 22 N -0.60 -13.69 2.87 -162.72 -0.47 -14.16 16 23 C -0.23 -6.17 7.75 -15.06 -0.12 -6.29 16 24 H 0.10 2.65 7.21 -52.49 -0.38 2.27 16 25 C 0.02 0.66 5.45 -17.43 -0.10 0.56 16 26 N -0.91 -27.27 13.97 55.49 0.78 -26.49 16 27 Si 0.88 22.37 24.40 -169.99 -4.15 18.23 16 28 H -0.29 -7.14 6.93 56.52 0.39 -6.75 16 29 H -0.27 -6.78 6.37 56.52 0.36 -6.42 16 30 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 31 H 0.10 2.17 5.41 -51.92 -0.28 1.89 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 4.57 6.40 -40.82 -0.26 4.31 16 37 H 0.13 1.04 6.40 -52.49 -0.34 0.70 16 38 H 0.13 0.90 7.34 -52.49 -0.39 0.52 16 39 H 0.14 1.58 7.65 -52.49 -0.40 1.18 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.32 7.85 -51.93 -0.41 -0.09 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.04 0.24 8.10 -51.92 -0.42 -0.18 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.41 7.28 -51.92 -0.38 0.03 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.06 1.36 7.22 -51.93 -0.38 0.99 16 50 H 0.03 0.66 5.22 -51.93 -0.27 0.39 16 51 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 391.26 15.07 5.90 5.90 Total: -1.00 -32.52 391.26 -10.39 -42.90 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.09 Total: 3.47 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -3.24 Total: -5.09 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.90 Total: -55.59 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.15 Total: 18.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.52 -10.39 -42.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087786050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.456 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds